Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0818

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0815 and Echvi_0816 are separated by 139 nucleotidesEchvi_0816 and Echvi_0817 overlap by 3 nucleotidesEchvi_0817 and Echvi_0818 are separated by 204 nucleotidesEchvi_0818 and Echvi_0819 are separated by 435 nucleotides Echvi_0815: Echvi_0815 - GTP-binding protein Era, at 934,058 to 934,948 _0815 Echvi_0816: Echvi_0816 - tRNA, at 935,088 to 935,163 _0816 Echvi_0817: Echvi_0817 - hypothetical protein, at 935,161 to 935,358 _0817 Echvi_0818: Echvi_0818 - Uncharacterized conserved protein, at 935,563 to 936,705 _0818 Echvi_0819: Echvi_0819 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 937,141 to 937,662 _0819 Position (kb) 935 936 937Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 935.320 kb on + strand, within Echvi_0817at 935.320 kb on + strand, within Echvi_0817at 935.392 kb on - strandat 935.392 kb on - strandat 935.433 kb on + strandat 935.438 kb on - strandat 935.443 kb on + strandat 935.616 kb on + strandat 935.637 kb on - strandat 935.662 kb on - strandat 935.668 kb on - strandat 935.714 kb on + strand, within Echvi_0818at 935.721 kb on + strand, within Echvi_0818at 935.721 kb on + strand, within Echvi_0818at 935.721 kb on + strand, within Echvi_0818at 935.722 kb on - strand, within Echvi_0818at 935.722 kb on - strand, within Echvi_0818at 935.742 kb on - strand, within Echvi_0818at 935.756 kb on + strand, within Echvi_0818at 935.756 kb on + strand, within Echvi_0818at 935.757 kb on - strand, within Echvi_0818at 935.757 kb on - strand, within Echvi_0818at 935.757 kb on - strand, within Echvi_0818at 935.968 kb on + strand, within Echvi_0818at 935.982 kb on - strand, within Echvi_0818at 936.013 kb on - strand, within Echvi_0818at 936.105 kb on - strand, within Echvi_0818at 936.161 kb on + strand, within Echvi_0818at 936.162 kb on - strand, within Echvi_0818at 936.170 kb on + strand, within Echvi_0818at 936.171 kb on - strand, within Echvi_0818at 936.252 kb on + strand, within Echvi_0818at 936.253 kb on - strand, within Echvi_0818at 936.270 kb on + strand, within Echvi_0818at 936.271 kb on - strand, within Echvi_0818at 936.271 kb on - strand, within Echvi_0818at 936.271 kb on - strand, within Echvi_0818at 936.271 kb on - strand, within Echvi_0818at 936.271 kb on - strand, within Echvi_0818at 936.271 kb on - strand, within Echvi_0818at 936.304 kb on + strand, within Echvi_0818at 936.305 kb on - strand, within Echvi_0818at 936.305 kb on - strand, within Echvi_0818at 936.305 kb on - strand, within Echvi_0818at 936.307 kb on + strand, within Echvi_0818at 936.307 kb on + strand, within Echvi_0818at 936.308 kb on - strand, within Echvi_0818at 936.308 kb on - strand, within Echvi_0818at 936.308 kb on - strand, within Echvi_0818at 936.347 kb on + strand, within Echvi_0818at 936.347 kb on + strand, within Echvi_0818at 936.348 kb on - strand, within Echvi_0818at 936.348 kb on - strand, within Echvi_0818at 936.411 kb on - strand, within Echvi_0818at 936.459 kb on + strand, within Echvi_0818at 936.489 kb on - strand, within Echvi_0818at 936.496 kb on - strand, within Echvi_0818at 936.500 kb on + strand, within Echvi_0818at 936.501 kb on - strand, within Echvi_0818at 936.524 kb on + strand, within Echvi_0818at 936.525 kb on - strand, within Echvi_0818at 936.595 kb on - strandat 936.657 kb on - strandat 936.680 kb on + strandat 936.680 kb on + strandat 936.681 kb on - strandat 936.720 kb on + strandat 936.720 kb on + strandat 936.721 kb on - strandat 936.768 kb on - strandat 936.768 kb on - strandat 936.906 kb on + strandat 936.907 kb on - strandat 936.907 kb on - strandat 936.907 kb on - strandat 936.947 kb on + strandat 936.979 kb on + strandat 936.979 kb on + strandat 936.984 kb on + strandat 937.002 kb on - strandat 937.002 kb on - strandat 937.012 kb on + strandat 937.012 kb on + strandat 937.020 kb on - strandat 937.053 kb on + strandat 937.071 kb on + strandat 937.072 kb on - strandat 937.087 kb on - strandat 937.087 kb on - strandat 937.091 kb on + strandat 937.149 kb on - strandat 937.226 kb on - strand, within Echvi_0819at 937.226 kb on - strand, within Echvi_0819at 937.241 kb on - strand, within Echvi_0819at 937.280 kb on - strand, within Echvi_0819at 937.306 kb on - strand, within Echvi_0819at 937.376 kb on + strand, within Echvi_0819at 937.387 kb on - strand, within Echvi_0819at 937.411 kb on + strand, within Echvi_0819at 937.411 kb on + strand, within Echvi_0819at 937.411 kb on + strand, within Echvi_0819at 937.411 kb on + strand, within Echvi_0819at 937.411 kb on + strand, within Echvi_0819at 937.411 kb on + strand, within Echvi_0819at 937.412 kb on - strand, within Echvi_0819at 937.412 kb on - strand, within Echvi_0819at 937.413 kb on + strand, within Echvi_0819at 937.414 kb on - strand, within Echvi_0819at 937.414 kb on - strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.415 kb on + strand, within Echvi_0819at 937.416 kb on - strand, within Echvi_0819at 937.416 kb on - strand, within Echvi_0819at 937.416 kb on - strand, within Echvi_0819at 937.416 kb on - strand, within Echvi_0819at 937.416 kb on - strand, within Echvi_0819at 937.416 kb on - strand, within Echvi_0819at 937.422 kb on - strand, within Echvi_0819at 937.436 kb on + strand, within Echvi_0819at 937.585 kb on + strand, within Echvi_0819at 937.615 kb on + strandat 937.639 kb on + strandat 937.649 kb on + strandat 937.653 kb on + strandat 937.658 kb on - strandat 937.658 kb on - strandat 937.701 kb on - strandat 937.701 kb on - strandat 937.705 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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935,320 + Echvi_0817 0.80 +1.2
935,320 + Echvi_0817 0.80 -1.0
935,392 - -1.4
935,392 - -1.0
935,433 + -0.1
935,438 - -0.1
935,443 + -0.1
935,616 + +1.7
935,637 - +0.6
935,662 - -0.5
935,668 - -1.6
935,714 + Echvi_0818 0.13 +0.0
935,721 + Echvi_0818 0.14 +2.1
935,721 + Echvi_0818 0.14 -0.6
935,721 + Echvi_0818 0.14 -1.1
935,722 - Echvi_0818 0.14 +0.5
935,722 - Echvi_0818 0.14 +0.3
935,742 - Echvi_0818 0.16 -0.1
935,756 + Echvi_0818 0.17 -1.1
935,756 + Echvi_0818 0.17 -1.4
935,757 - Echvi_0818 0.17 +0.3
935,757 - Echvi_0818 0.17 +1.1
935,757 - Echvi_0818 0.17 +0.3
935,968 + Echvi_0818 0.35 +1.7
935,982 - Echvi_0818 0.37 -1.3
936,013 - Echvi_0818 0.39 +5.3
936,105 - Echvi_0818 0.47 -0.3
936,161 + Echvi_0818 0.52 +5.3
936,162 - Echvi_0818 0.52 -1.1
936,170 + Echvi_0818 0.53 +1.0
936,171 - Echvi_0818 0.53 -1.9
936,252 + Echvi_0818 0.60 +0.9
936,253 - Echvi_0818 0.60 -1.0
936,270 + Echvi_0818 0.62 -3.2
936,271 - Echvi_0818 0.62 +0.5
936,271 - Echvi_0818 0.62 +1.6
936,271 - Echvi_0818 0.62 +1.7
936,271 - Echvi_0818 0.62 +0.4
936,271 - Echvi_0818 0.62 -2.3
936,271 - Echvi_0818 0.62 +3.4
936,304 + Echvi_0818 0.65 -1.1
936,305 - Echvi_0818 0.65 +1.9
936,305 - Echvi_0818 0.65 +0.2
936,305 - Echvi_0818 0.65 +0.4
936,307 + Echvi_0818 0.65 -2.1
936,307 + Echvi_0818 0.65 -0.9
936,308 - Echvi_0818 0.65 +1.4
936,308 - Echvi_0818 0.65 +1.2
936,308 - Echvi_0818 0.65 -0.3
936,347 + Echvi_0818 0.69 -0.4
936,347 + Echvi_0818 0.69 -2.0
936,348 - Echvi_0818 0.69 -1.8
936,348 - Echvi_0818 0.69 +1.6
936,411 - Echvi_0818 0.74 +1.9
936,459 + Echvi_0818 0.78 +0.9
936,489 - Echvi_0818 0.81 +2.0
936,496 - Echvi_0818 0.82 -1.3
936,500 + Echvi_0818 0.82 -0.6
936,501 - Echvi_0818 0.82 +0.4
936,524 + Echvi_0818 0.84 -2.1
936,525 - Echvi_0818 0.84 +1.0
936,595 - -0.8
936,657 - -1.8
936,680 + +3.8
936,680 + +1.1
936,681 - -0.8
936,720 + -2.5
936,720 + +1.4
936,721 - +1.8
936,768 - -1.7
936,768 - +1.8
936,906 + +3.3
936,907 - -2.5
936,907 - -2.0
936,907 - +1.1
936,947 + -2.8
936,979 + -3.0
936,979 + +1.6
936,984 + -0.2
937,002 - -2.7
937,002 - +1.4
937,012 + +1.3
937,012 + -1.7
937,020 - +1.9
937,053 + -2.0
937,071 + -0.7
937,072 - -2.7
937,087 - +1.6
937,087 - +0.4
937,091 + +1.4
937,149 - -1.5
937,226 - Echvi_0819 0.16 -1.7
937,226 - Echvi_0819 0.16 -0.5
937,241 - Echvi_0819 0.19 -2.5
937,280 - Echvi_0819 0.27 -1.3
937,306 - Echvi_0819 0.32 -2.6
937,376 + Echvi_0819 0.45 -2.9
937,387 - Echvi_0819 0.47 -2.9
937,411 + Echvi_0819 0.52 -1.9
937,411 + Echvi_0819 0.52 -0.8
937,411 + Echvi_0819 0.52 -1.7
937,411 + Echvi_0819 0.52 +1.4
937,411 + Echvi_0819 0.52 -1.8
937,411 + Echvi_0819 0.52 +2.1
937,412 - Echvi_0819 0.52 -0.6
937,412 - Echvi_0819 0.52 +1.3
937,413 + Echvi_0819 0.52 +1.8
937,414 - Echvi_0819 0.52 +1.1
937,414 - Echvi_0819 0.52 +1.5
937,415 + Echvi_0819 0.52 +1.4
937,415 + Echvi_0819 0.52 +1.6
937,415 + Echvi_0819 0.52 -2.4
937,415 + Echvi_0819 0.52 -2.7
937,415 + Echvi_0819 0.52 -0.4
937,415 + Echvi_0819 0.52 +0.6
937,415 + Echvi_0819 0.52 -3.1
937,415 + Echvi_0819 0.52 +0.6
937,415 + Echvi_0819 0.52 -1.6
937,415 + Echvi_0819 0.52 -1.7
937,416 - Echvi_0819 0.53 +1.0
937,416 - Echvi_0819 0.53 +1.3
937,416 - Echvi_0819 0.53 +0.8
937,416 - Echvi_0819 0.53 -0.7
937,416 - Echvi_0819 0.53 -1.5
937,416 - Echvi_0819 0.53 +0.8
937,422 - Echvi_0819 0.54 +0.9
937,436 + Echvi_0819 0.57 +1.8
937,585 + Echvi_0819 0.85 -0.1
937,615 + -2.2
937,639 + -0.6
937,649 + -1.0
937,653 + +1.0
937,658 - -2.4
937,658 - +0.3
937,701 - -3.0
937,701 - +0.1
937,705 - +2.1

Or see this region's nucleotide sequence