Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0778 and Echvi_0779 are separated by 185 nucleotides Echvi_0779 and Echvi_0780 overlap by 8 nucleotides
Echvi_0778: Echvi_0778 - Beta-glucosidase-related glycosidases, at 876,370 to 879,342
_0778
Echvi_0779: Echvi_0779 - hypothetical protein, at 879,528 to 879,944
_0779
Echvi_0780: Echvi_0780 - DNA mismatch repair protein MutL, at 879,937 to 881,808
_0780
Position (kb) 879
880 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 878.574 kb on + strand, within Echvi_0778 at 878.628 kb on + strand, within Echvi_0778 at 878.629 kb on - strand, within Echvi_0778 at 878.629 kb on - strand, within Echvi_0778 at 878.629 kb on - strand, within Echvi_0778 at 878.712 kb on + strand, within Echvi_0778 at 878.712 kb on + strand, within Echvi_0778 at 878.713 kb on - strand, within Echvi_0778 at 878.713 kb on - strand, within Echvi_0778 at 878.715 kb on - strand, within Echvi_0778 at 878.873 kb on + strand, within Echvi_0778 at 878.874 kb on - strand, within Echvi_0778 at 878.874 kb on - strand, within Echvi_0778 at 879.005 kb on + strand, within Echvi_0778 at 879.006 kb on - strand, within Echvi_0778 at 879.008 kb on + strand, within Echvi_0778 at 879.009 kb on - strand, within Echvi_0778 at 879.009 kb on - strand, within Echvi_0778 at 879.009 kb on - strand, within Echvi_0778 at 879.052 kb on + strand at 879.212 kb on + strand at 879.213 kb on - strand at 879.213 kb on - strand at 879.213 kb on - strand at 879.275 kb on - strand at 879.275 kb on - strand at 879.366 kb on + strand at 879.367 kb on - strand at 879.378 kb on + strand at 879.386 kb on + strand at 879.429 kb on + strand at 879.435 kb on + strand at 879.447 kb on + strand at 879.447 kb on + strand at 879.447 kb on + strand at 879.456 kb on + strand at 879.456 kb on + strand at 879.491 kb on + strand at 879.491 kb on + strand at 879.491 kb on + strand at 879.491 kb on + strand at 879.497 kb on + strand at 879.497 kb on + strand at 879.502 kb on + strand at 879.502 kb on + strand at 879.502 kb on + strand at 879.502 kb on + strand at 879.544 kb on + strand at 879.591 kb on + strand, within Echvi_0779 at 879.686 kb on + strand, within Echvi_0779 at 879.686 kb on + strand, within Echvi_0779 at 879.737 kb on + strand, within Echvi_0779 at 879.846 kb on + strand, within Echvi_0779 at 879.846 kb on + strand, within Echvi_0779 at 879.846 kb on + strand, within Echvi_0779 at 879.865 kb on + strand, within Echvi_0779 at 879.865 kb on + strand, within Echvi_0779 at 879.866 kb on - strand, within Echvi_0779 at 879.866 kb on - strand, within Echvi_0779 at 879.867 kb on + strand, within Echvi_0779 at 879.867 kb on + strand, within Echvi_0779 at 879.867 kb on + strand, within Echvi_0779 at 879.868 kb on - strand, within Echvi_0779 at 879.879 kb on + strand, within Echvi_0779 at 879.914 kb on + strand at 879.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 878,574 + Echvi_0778 0.74 +2.5 878,628 + Echvi_0778 0.76 +0.9 878,629 - Echvi_0778 0.76 +0.1 878,629 - Echvi_0778 0.76 +0.2 878,629 - Echvi_0778 0.76 -1.5 878,712 + Echvi_0778 0.79 +2.2 878,712 + Echvi_0778 0.79 +0.9 878,713 - Echvi_0778 0.79 -0.3 878,713 - Echvi_0778 0.79 +1.2 878,715 - Echvi_0778 0.79 -1.8 878,873 + Echvi_0778 0.84 -0.6 878,874 - Echvi_0778 0.84 +0.7 878,874 - Echvi_0778 0.84 +0.1 879,005 + Echvi_0778 0.89 -0.3 879,006 - Echvi_0778 0.89 +1.8 879,008 + Echvi_0778 0.89 -2.0 879,009 - Echvi_0778 0.89 +1.5 879,009 - Echvi_0778 0.89 -2.3 879,009 - Echvi_0778 0.89 -0.1 879,052 + -2.2 879,212 + -1.1 879,213 - -0.9 879,213 - -2.6 879,213 - +1.5 879,275 - -1.4 879,275 - -0.9 879,366 + +0.9 879,367 - +2.4 879,378 + -3.8 879,386 + +1.3 879,429 + -0.3 879,435 + -0.3 879,447 + +0.8 879,447 + -1.0 879,447 + +1.2 879,456 + -1.7 879,456 + -1.3 879,491 + -1.3 879,491 + -0.5 879,491 + -2.0 879,491 + +2.6 879,497 + +2.7 879,497 + -0.1 879,502 + -2.9 879,502 + +2.5 879,502 + -0.1 879,502 + -0.7 879,544 + -1.2 879,591 + Echvi_0779 0.15 +1.5 879,686 + Echvi_0779 0.38 +2.9 879,686 + Echvi_0779 0.38 +5.8 879,737 + Echvi_0779 0.50 +2.3 879,846 + Echvi_0779 0.76 -1.0 879,846 + Echvi_0779 0.76 +3.7 879,846 + Echvi_0779 0.76 +0.8 879,865 + Echvi_0779 0.81 +1.5 879,865 + Echvi_0779 0.81 -0.9 879,866 - Echvi_0779 0.81 +1.5 879,866 - Echvi_0779 0.81 +1.9 879,867 + Echvi_0779 0.81 +1.0 879,867 + Echvi_0779 0.81 -0.9 879,867 + Echvi_0779 0.81 +1.3 879,868 - Echvi_0779 0.82 +0.0 879,879 + Echvi_0779 0.84 +1.2 879,914 + +1.0 879,914 + -0.7
Or see this region's nucleotide sequence