Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0682

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0681 and Echvi_0682 overlap by 4 nucleotidesEchvi_0682 and Echvi_0683 are separated by 344 nucleotides Echvi_0681: Echvi_0681 - Cation/multidrug efflux pump, at 765,695 to 768,757 _0681 Echvi_0682: Echvi_0682 - Outer membrane protein, at 768,754 to 770,082 _0682 Echvi_0683: Echvi_0683 - Putative regulator of cell autolysis, at 770,427 to 772,589 _0683 Position (kb) 768 769 770 771Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 767.757 kb on + strand, within Echvi_0681at 767.859 kb on + strand, within Echvi_0681at 767.919 kb on - strand, within Echvi_0681at 767.943 kb on - strand, within Echvi_0681at 768.034 kb on - strand, within Echvi_0681at 768.052 kb on - strand, within Echvi_0681at 768.208 kb on + strand, within Echvi_0681at 768.283 kb on + strand, within Echvi_0681at 768.283 kb on + strand, within Echvi_0681at 768.284 kb on - strand, within Echvi_0681at 768.293 kb on + strand, within Echvi_0681at 768.378 kb on + strand, within Echvi_0681at 768.403 kb on + strand, within Echvi_0681at 768.403 kb on + strand, within Echvi_0681at 768.403 kb on + strand, within Echvi_0681at 768.404 kb on - strand, within Echvi_0681at 768.672 kb on + strandat 768.672 kb on + strandat 768.672 kb on + strandat 768.673 kb on - strandat 768.673 kb on - strandat 768.675 kb on + strandat 768.675 kb on + strandat 768.676 kb on - strandat 768.693 kb on + strandat 768.715 kb on + strandat 768.716 kb on - strandat 768.719 kb on + strandat 768.754 kb on - strandat 768.798 kb on - strandat 768.798 kb on - strandat 768.799 kb on + strandat 768.800 kb on - strandat 768.866 kb on - strandat 768.955 kb on - strand, within Echvi_0682at 768.955 kb on - strand, within Echvi_0682at 768.955 kb on - strand, within Echvi_0682at 768.955 kb on - strand, within Echvi_0682at 768.959 kb on - strand, within Echvi_0682at 768.959 kb on - strand, within Echvi_0682at 768.986 kb on + strand, within Echvi_0682at 768.986 kb on + strand, within Echvi_0682at 768.987 kb on - strand, within Echvi_0682at 768.987 kb on - strand, within Echvi_0682at 769.072 kb on + strand, within Echvi_0682at 769.072 kb on + strand, within Echvi_0682at 769.072 kb on + strand, within Echvi_0682at 769.072 kb on + strand, within Echvi_0682at 769.073 kb on - strand, within Echvi_0682at 769.189 kb on + strand, within Echvi_0682at 769.190 kb on - strand, within Echvi_0682at 769.190 kb on - strand, within Echvi_0682at 769.282 kb on + strand, within Echvi_0682at 769.328 kb on + strand, within Echvi_0682at 769.328 kb on + strand, within Echvi_0682at 769.335 kb on + strand, within Echvi_0682at 769.336 kb on - strand, within Echvi_0682at 769.336 kb on - strand, within Echvi_0682at 769.451 kb on + strand, within Echvi_0682at 769.451 kb on + strand, within Echvi_0682at 769.451 kb on + strand, within Echvi_0682at 769.451 kb on + strand, within Echvi_0682at 769.451 kb on + strand, within Echvi_0682at 769.452 kb on - strand, within Echvi_0682at 769.488 kb on - strand, within Echvi_0682at 769.588 kb on + strand, within Echvi_0682at 769.589 kb on - strand, within Echvi_0682at 769.765 kb on + strand, within Echvi_0682at 769.765 kb on + strand, within Echvi_0682at 769.765 kb on + strand, within Echvi_0682at 769.765 kb on + strand, within Echvi_0682at 769.765 kb on + strand, within Echvi_0682at 769.765 kb on + strand, within Echvi_0682at 769.766 kb on - strand, within Echvi_0682at 769.766 kb on - strand, within Echvi_0682at 769.807 kb on + strand, within Echvi_0682at 769.808 kb on - strand, within Echvi_0682at 769.818 kb on + strand, within Echvi_0682at 769.825 kb on + strand, within Echvi_0682at 769.874 kb on + strand, within Echvi_0682at 769.875 kb on - strand, within Echvi_0682at 769.930 kb on + strand, within Echvi_0682at 769.930 kb on + strand, within Echvi_0682at 769.930 kb on + strand, within Echvi_0682at 769.931 kb on - strand, within Echvi_0682at 769.941 kb on + strand, within Echvi_0682at 769.955 kb on + strandat 769.955 kb on + strandat 770.047 kb on + strandat 770.050 kb on + strandat 770.051 kb on - strandat 770.072 kb on + strandat 770.072 kb on + strandat 770.072 kb on + strandat 770.073 kb on - strandat 770.210 kb on - strandat 770.233 kb on + strandat 770.234 kb on - strandat 770.234 kb on - strandat 770.234 kb on - strandat 770.270 kb on - strandat 770.280 kb on + strandat 770.281 kb on - strandat 770.281 kb on - strandat 770.281 kb on - strandat 770.281 kb on - strandat 770.350 kb on - strandat 770.382 kb on - strandat 770.410 kb on + strandat 770.411 kb on - strandat 770.426 kb on + strandat 770.435 kb on - strandat 770.458 kb on + strandat 770.458 kb on + strandat 770.458 kb on + strandat 770.467 kb on + strandat 770.549 kb on + strandat 770.575 kb on + strandat 770.668 kb on + strand, within Echvi_0683at 770.686 kb on + strand, within Echvi_0683at 770.686 kb on + strand, within Echvi_0683at 770.686 kb on + strand, within Echvi_0683at 770.686 kb on + strand, within Echvi_0683at 770.687 kb on - strand, within Echvi_0683at 770.687 kb on - strand, within Echvi_0683at 770.687 kb on - strand, within Echvi_0683at 770.687 kb on - strand, within Echvi_0683at 770.687 kb on - strand, within Echvi_0683at 770.691 kb on + strand, within Echvi_0683at 770.691 kb on + strand, within Echvi_0683at 770.691 kb on + strand, within Echvi_0683at 770.691 kb on + strand, within Echvi_0683at 770.692 kb on - strand, within Echvi_0683at 770.724 kb on + strand, within Echvi_0683at 770.724 kb on + strand, within Echvi_0683at 770.731 kb on - strand, within Echvi_0683at 770.880 kb on + strand, within Echvi_0683at 770.880 kb on + strand, within Echvi_0683at 770.948 kb on + strand, within Echvi_0683at 770.948 kb on + strand, within Echvi_0683at 770.949 kb on - strand, within Echvi_0683at 770.949 kb on - strand, within Echvi_0683at 771.006 kb on + strand, within Echvi_0683at 771.041 kb on + strand, within Echvi_0683at 771.041 kb on + strand, within Echvi_0683at 771.042 kb on - strand, within Echvi_0683at 771.042 kb on - strand, within Echvi_0683at 771.042 kb on - strand, within Echvi_0683at 771.042 kb on - strand, within Echvi_0683at 771.047 kb on + strand, within Echvi_0683at 771.048 kb on - strand, within Echvi_0683

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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767,757 + Echvi_0681 0.67 -1.5
767,859 + Echvi_0681 0.71 -1.3
767,919 - Echvi_0681 0.73 -0.1
767,943 - Echvi_0681 0.73 +0.7
768,034 - Echvi_0681 0.76 -3.0
768,052 - Echvi_0681 0.77 +0.5
768,208 + Echvi_0681 0.82 +0.1
768,283 + Echvi_0681 0.84 +0.5
768,283 + Echvi_0681 0.84 -2.0
768,284 - Echvi_0681 0.85 +1.7
768,293 + Echvi_0681 0.85 +0.8
768,378 + Echvi_0681 0.88 -0.7
768,403 + Echvi_0681 0.88 +1.5
768,403 + Echvi_0681 0.88 +0.5
768,403 + Echvi_0681 0.88 +0.2
768,404 - Echvi_0681 0.88 -0.4
768,672 + +3.4
768,672 + +1.8
768,672 + -2.1
768,673 - -0.4
768,673 - +0.9
768,675 + -1.9
768,675 + +1.4
768,676 - +0.9
768,693 + +0.4
768,715 + +2.1
768,716 - +3.4
768,719 + -1.5
768,754 - -3.7
768,798 - -1.4
768,798 - -0.9
768,799 + -0.6
768,800 - -0.9
768,866 - -2.7
768,955 - Echvi_0682 0.15 -0.6
768,955 - Echvi_0682 0.15 -2.8
768,955 - Echvi_0682 0.15 +0.5
768,955 - Echvi_0682 0.15 -3.1
768,959 - Echvi_0682 0.15 -0.0
768,959 - Echvi_0682 0.15 +1.7
768,986 + Echvi_0682 0.17 +0.8
768,986 + Echvi_0682 0.17 +0.7
768,987 - Echvi_0682 0.18 -1.7
768,987 - Echvi_0682 0.18 -2.1
769,072 + Echvi_0682 0.24 -2.1
769,072 + Echvi_0682 0.24 +0.1
769,072 + Echvi_0682 0.24 +0.2
769,072 + Echvi_0682 0.24 +0.1
769,073 - Echvi_0682 0.24 -0.3
769,189 + Echvi_0682 0.33 -1.8
769,190 - Echvi_0682 0.33 +0.3
769,190 - Echvi_0682 0.33 -0.5
769,282 + Echvi_0682 0.40 +0.7
769,328 + Echvi_0682 0.43 -0.9
769,328 + Echvi_0682 0.43 -1.9
769,335 + Echvi_0682 0.44 +0.8
769,336 - Echvi_0682 0.44 +0.4
769,336 - Echvi_0682 0.44 -3.0
769,451 + Echvi_0682 0.52 -2.2
769,451 + Echvi_0682 0.52 +1.6
769,451 + Echvi_0682 0.52 +1.9
769,451 + Echvi_0682 0.52 +0.6
769,451 + Echvi_0682 0.52 -0.6
769,452 - Echvi_0682 0.53 -1.9
769,488 - Echvi_0682 0.55 -1.6
769,588 + Echvi_0682 0.63 +3.4
769,589 - Echvi_0682 0.63 -0.7
769,765 + Echvi_0682 0.76 +1.1
769,765 + Echvi_0682 0.76 -1.7
769,765 + Echvi_0682 0.76 +1.3
769,765 + Echvi_0682 0.76 +0.9
769,765 + Echvi_0682 0.76 +1.4
769,765 + Echvi_0682 0.76 -0.7
769,766 - Echvi_0682 0.76 +1.2
769,766 - Echvi_0682 0.76 +0.5
769,807 + Echvi_0682 0.79 -1.0
769,808 - Echvi_0682 0.79 -1.9
769,818 + Echvi_0682 0.80 +2.0
769,825 + Echvi_0682 0.81 +0.6
769,874 + Echvi_0682 0.84 +1.4
769,875 - Echvi_0682 0.84 +0.1
769,930 + Echvi_0682 0.88 -2.6
769,930 + Echvi_0682 0.88 -0.7
769,930 + Echvi_0682 0.88 +1.7
769,931 - Echvi_0682 0.89 +2.2
769,941 + Echvi_0682 0.89 +0.2
769,955 + +1.9
769,955 + -1.1
770,047 + -2.1
770,050 + +1.3
770,051 - +1.8
770,072 + -2.1
770,072 + +0.7
770,072 + +0.9
770,073 - +1.0
770,210 - -2.6
770,233 + -2.8
770,234 - +1.4
770,234 - -1.8
770,234 - +0.9
770,270 - +1.5
770,280 + -1.6
770,281 - -0.6
770,281 - +0.8
770,281 - -0.6
770,281 - -0.5
770,350 - -1.5
770,382 - -0.3
770,410 + -1.4
770,411 - +0.8
770,426 + -3.6
770,435 - +0.5
770,458 + +0.0
770,458 + +1.9
770,458 + -0.4
770,467 + +0.1
770,549 + +1.1
770,575 + -2.4
770,668 + Echvi_0683 0.11 -1.6
770,686 + Echvi_0683 0.12 -1.4
770,686 + Echvi_0683 0.12 -2.1
770,686 + Echvi_0683 0.12 -2.3
770,686 + Echvi_0683 0.12 -0.4
770,687 - Echvi_0683 0.12 +1.2
770,687 - Echvi_0683 0.12 -0.7
770,687 - Echvi_0683 0.12 +0.1
770,687 - Echvi_0683 0.12 -1.8
770,687 - Echvi_0683 0.12 -0.7
770,691 + Echvi_0683 0.12 -2.1
770,691 + Echvi_0683 0.12 +0.8
770,691 + Echvi_0683 0.12 -2.8
770,691 + Echvi_0683 0.12 +1.2
770,692 - Echvi_0683 0.12 +2.4
770,724 + Echvi_0683 0.14 -1.6
770,724 + Echvi_0683 0.14 +1.2
770,731 - Echvi_0683 0.14 -0.4
770,880 + Echvi_0683 0.21 -0.7
770,880 + Echvi_0683 0.21 -0.4
770,948 + Echvi_0683 0.24 +0.3
770,948 + Echvi_0683 0.24 +0.9
770,949 - Echvi_0683 0.24 +1.7
770,949 - Echvi_0683 0.24 -1.5
771,006 + Echvi_0683 0.27 +1.2
771,041 + Echvi_0683 0.28 -2.6
771,041 + Echvi_0683 0.28 -2.0
771,042 - Echvi_0683 0.28 -1.4
771,042 - Echvi_0683 0.28 -1.0
771,042 - Echvi_0683 0.28 +2.1
771,042 - Echvi_0683 0.28 +1.4
771,047 + Echvi_0683 0.29 +0.6
771,048 - Echvi_0683 0.29 +1.4

Or see this region's nucleotide sequence