Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0652

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0651 and Echvi_0652 are separated by 137 nucleotidesEchvi_0652 and Echvi_0653 are separated by 3 nucleotides Echvi_0651: Echvi_0651 - Outer membrane protein, at 735,190 to 735,750 _0651 Echvi_0652: Echvi_0652 - Outer membrane protein, at 735,888 to 736,436 _0652 Echvi_0653: Echvi_0653 - Outer membrane protein/protective antigen OMA87, at 736,440 to 739,154 _0653 Position (kb) 735 736 737Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 734.917 kb on + strandat 734.926 kb on + strandat 734.926 kb on + strandat 734.926 kb on + strandat 734.927 kb on - strandat 734.929 kb on + strandat 734.930 kb on - strandat 734.930 kb on - strandat 734.930 kb on - strandat 734.940 kb on + strandat 734.980 kb on + strandat 734.980 kb on + strandat 734.980 kb on + strandat 734.981 kb on - strandat 734.981 kb on - strandat 734.991 kb on - strandat 734.991 kb on - strandat 735.032 kb on + strandat 735.032 kb on + strandat 735.032 kb on + strandat 735.032 kb on + strandat 735.033 kb on - strandat 735.039 kb on + strandat 735.039 kb on + strandat 735.040 kb on - strandat 735.043 kb on + strandat 735.055 kb on + strandat 735.055 kb on + strandat 735.061 kb on - strandat 735.175 kb on + strandat 735.772 kb on - strandat 735.981 kb on - strand, within Echvi_0652at 735.983 kb on - strand, within Echvi_0652at 735.983 kb on - strand, within Echvi_0652at 736.008 kb on - strand, within Echvi_0652at 736.017 kb on - strand, within Echvi_0652at 736.106 kb on - strand, within Echvi_0652at 736.106 kb on - strand, within Echvi_0652at 736.109 kb on - strand, within Echvi_0652at 736.120 kb on - strand, within Echvi_0652at 736.142 kb on - strand, within Echvi_0652at 736.146 kb on - strand, within Echvi_0652at 736.193 kb on - strand, within Echvi_0652at 736.193 kb on - strand, within Echvi_0652at 736.193 kb on - strand, within Echvi_0652at 736.193 kb on - strand, within Echvi_0652at 736.238 kb on - strand, within Echvi_0652at 736.238 kb on - strand, within Echvi_0652at 736.238 kb on - strand, within Echvi_0652at 736.238 kb on - strand, within Echvi_0652at 736.301 kb on + strand, within Echvi_0652at 736.341 kb on + strand, within Echvi_0652at 736.342 kb on - strand, within Echvi_0652at 736.349 kb on - strand, within Echvi_0652at 736.417 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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734,917 + +1.5
734,926 + +2.5
734,926 + -2.2
734,926 + -3.7
734,927 - -0.8
734,929 + +0.4
734,930 - -2.7
734,930 - -2.0
734,930 - -1.3
734,940 + -1.4
734,980 + +1.2
734,980 + -0.5
734,980 + -1.4
734,981 - +1.5
734,981 - -1.1
734,991 - -2.4
734,991 - -0.8
735,032 + +1.4
735,032 + +1.0
735,032 + +0.9
735,032 + -2.4
735,033 - -1.3
735,039 + +2.2
735,039 + -1.0
735,040 - -1.2
735,043 + -3.2
735,055 + -0.6
735,055 + -1.0
735,061 - -1.9
735,175 + -0.2
735,772 - +2.3
735,981 - Echvi_0652 0.17 +1.6
735,983 - Echvi_0652 0.17 +2.5
735,983 - Echvi_0652 0.17 +2.4
736,008 - Echvi_0652 0.22 -1.7
736,017 - Echvi_0652 0.23 +2.7
736,106 - Echvi_0652 0.40 +4.9
736,106 - Echvi_0652 0.40 +1.6
736,109 - Echvi_0652 0.40 +2.5
736,120 - Echvi_0652 0.42 +0.9
736,142 - Echvi_0652 0.46 +1.7
736,146 - Echvi_0652 0.47 +1.8
736,193 - Echvi_0652 0.56 +2.1
736,193 - Echvi_0652 0.56 +2.2
736,193 - Echvi_0652 0.56 +1.5
736,193 - Echvi_0652 0.56 +3.0
736,238 - Echvi_0652 0.64 +1.5
736,238 - Echvi_0652 0.64 +2.1
736,238 - Echvi_0652 0.64 +2.4
736,238 - Echvi_0652 0.64 +2.2
736,301 + Echvi_0652 0.75 +3.4
736,341 + Echvi_0652 0.83 +1.8
736,342 - Echvi_0652 0.83 +2.8
736,349 - Echvi_0652 0.84 +1.7
736,417 - +1.8

Or see this region's nucleotide sequence