Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0619

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0618 and Echvi_0619 are separated by 77 nucleotidesEchvi_0619 and Echvi_0620 are separated by 60 nucleotidesEchvi_0620 and Echvi_0621 are separated by 48 nucleotides Echvi_0618: Echvi_0618 - Membrane carboxypeptidase/penicillin-binding protein, at 692,855 to 695,212 _0618 Echvi_0619: Echvi_0619 - excinuclease ABC, C subunit, at 695,290 to 697,092 _0619 Echvi_0620: Echvi_0620 - gliding motility associated protien GldN, at 697,153 to 697,974 _0620 Echvi_0621: Echvi_0621 - gliding motility-associated protein GldM, at 698,023 to 699,624 _0621 Position (kb) 695 696 697 698Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 695.197 kb on + strandat 695.305 kb on + strandat 695.356 kb on + strandat 695.373 kb on + strandat 695.374 kb on - strandat 695.374 kb on - strandat 695.384 kb on - strandat 695.384 kb on - strandat 695.426 kb on - strandat 695.496 kb on + strand, within Echvi_0619at 695.496 kb on + strand, within Echvi_0619at 695.569 kb on - strand, within Echvi_0619at 695.569 kb on - strand, within Echvi_0619at 695.596 kb on + strand, within Echvi_0619at 695.596 kb on + strand, within Echvi_0619at 695.603 kb on - strand, within Echvi_0619at 695.603 kb on - strand, within Echvi_0619at 695.606 kb on + strand, within Echvi_0619at 695.636 kb on + strand, within Echvi_0619at 695.636 kb on + strand, within Echvi_0619at 695.636 kb on + strand, within Echvi_0619at 695.637 kb on - strand, within Echvi_0619at 695.637 kb on - strand, within Echvi_0619at 695.713 kb on - strand, within Echvi_0619at 695.713 kb on - strand, within Echvi_0619at 695.713 kb on - strand, within Echvi_0619at 695.715 kb on - strand, within Echvi_0619at 695.776 kb on - strandat 695.776 kb on - strand, within Echvi_0619at 695.871 kb on - strand, within Echvi_0619at 696.020 kb on - strand, within Echvi_0619at 696.069 kb on - strand, within Echvi_0619at 696.215 kb on + strand, within Echvi_0619at 696.215 kb on + strand, within Echvi_0619at 696.355 kb on + strand, within Echvi_0619at 696.356 kb on - strandat 696.356 kb on - strand, within Echvi_0619at 696.361 kb on - strand, within Echvi_0619at 696.525 kb on + strand, within Echvi_0619at 696.553 kb on + strand, within Echvi_0619at 696.578 kb on + strand, within Echvi_0619at 696.579 kb on - strand, within Echvi_0619at 696.628 kb on + strand, within Echvi_0619at 696.643 kb on - strand, within Echvi_0619at 696.732 kb on + strand, within Echvi_0619at 696.737 kb on - strand, within Echvi_0619at 696.784 kb on + strand, within Echvi_0619at 696.784 kb on + strand, within Echvi_0619at 696.907 kb on - strand, within Echvi_0619at 696.957 kb on + strandat 696.958 kb on - strandat 696.974 kb on + strandat 696.975 kb on - strandat 696.982 kb on + strandat 696.985 kb on - strandat 696.985 kb on - strandat 697.071 kb on + strandat 697.072 kb on - strandat 697.073 kb on + strandat 697.096 kb on + strandat 697.097 kb on - strandat 697.097 kb on - strandat 697.097 kb on - strandat 697.101 kb on - strandat 697.154 kb on + strandat 697.194 kb on - strandat 697.194 kb on - strandat 697.217 kb on + strandat 697.218 kb on - strandat 697.318 kb on + strand, within Echvi_0620at 697.318 kb on + strand, within Echvi_0620at 697.318 kb on + strand, within Echvi_0620at 697.319 kb on - strand, within Echvi_0620at 697.319 kb on - strand, within Echvi_0620at 697.319 kb on - strand, within Echvi_0620at 697.350 kb on + strand, within Echvi_0620at 697.427 kb on + strand, within Echvi_0620at 697.427 kb on + strand, within Echvi_0620at 697.427 kb on + strand, within Echvi_0620at 697.427 kb on + strand, within Echvi_0620at 697.428 kb on - strand, within Echvi_0620at 697.428 kb on - strand, within Echvi_0620at 697.428 kb on - strand, within Echvi_0620at 697.487 kb on + strand, within Echvi_0620at 697.487 kb on + strand, within Echvi_0620at 697.487 kb on + strand, within Echvi_0620at 697.487 kb on + strand, within Echvi_0620at 697.487 kb on + strand, within Echvi_0620at 697.487 kb on + strand, within Echvi_0620at 697.487 kb on + strand, within Echvi_0620at 697.522 kb on - strand, within Echvi_0620at 697.542 kb on + strand, within Echvi_0620at 697.553 kb on + strand, within Echvi_0620at 697.553 kb on + strand, within Echvi_0620at 697.553 kb on + strand, within Echvi_0620at 697.553 kb on + strand, within Echvi_0620at 697.553 kb on + strand, within Echvi_0620at 697.554 kb on - strand, within Echvi_0620at 697.554 kb on - strand, within Echvi_0620at 697.554 kb on - strand, within Echvi_0620at 697.575 kb on + strand, within Echvi_0620at 697.576 kb on - strand, within Echvi_0620at 697.576 kb on - strand, within Echvi_0620at 697.623 kb on + strand, within Echvi_0620at 697.624 kb on - strand, within Echvi_0620at 697.638 kb on + strand, within Echvi_0620at 697.691 kb on + strand, within Echvi_0620at 697.691 kb on + strand, within Echvi_0620at 697.692 kb on - strand, within Echvi_0620at 697.692 kb on - strand, within Echvi_0620at 697.692 kb on - strand, within Echvi_0620at 697.692 kb on - strand, within Echvi_0620at 697.692 kb on - strand, within Echvi_0620at 697.692 kb on - strand, within Echvi_0620at 697.695 kb on + strand, within Echvi_0620at 697.695 kb on + strand, within Echvi_0620at 697.700 kb on + strand, within Echvi_0620at 697.700 kb on + strand, within Echvi_0620at 697.700 kb on - strand, within Echvi_0620at 697.701 kb on - strand, within Echvi_0620at 697.701 kb on - strand, within Echvi_0620at 697.701 kb on - strand, within Echvi_0620at 697.701 kb on - strand, within Echvi_0620at 697.701 kb on - strand, within Echvi_0620at 697.701 kb on - strand, within Echvi_0620at 697.701 kb on - strand, within Echvi_0620at 697.701 kb on - strand, within Echvi_0620at 697.736 kb on + strand, within Echvi_0620at 697.736 kb on + strand, within Echvi_0620at 697.769 kb on - strand, within Echvi_0620at 697.781 kb on - strand, within Echvi_0620at 697.800 kb on + strand, within Echvi_0620at 697.855 kb on - strand, within Echvi_0620at 697.884 kb on + strand, within Echvi_0620at 697.884 kb on + strand, within Echvi_0620at 697.885 kb on - strand, within Echvi_0620at 697.885 kb on - strand, within Echvi_0620at 697.885 kb on - strand, within Echvi_0620at 697.948 kb on + strandat 697.948 kb on + strandat 697.948 kb on + strandat 697.948 kb on + strandat 697.948 kb on + strandat 697.948 kb on + strandat 697.948 kb on + strandat 697.949 kb on - strandat 697.949 kb on - strandat 697.949 kb on - strandat 697.952 kb on + strandat 697.980 kb on + strandat 697.980 kb on + strandat 697.980 kb on + strandat 697.980 kb on + strandat 697.980 kb on + strandat 697.980 kb on + strandat 697.980 kb on + strandat 697.980 kb on + strandat 697.981 kb on - strandat 698.003 kb on + strandat 698.025 kb on - strandat 698.031 kb on + strandat 698.032 kb on - strandat 698.058 kb on + strandat 698.059 kb on - strandat 698.088 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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695,197 + +1.3
695,305 + -0.8
695,356 + -2.8
695,373 + -0.1
695,374 - -2.0
695,374 - -0.8
695,384 - -1.0
695,384 - +1.5
695,426 - -2.8
695,496 + Echvi_0619 0.11 -0.5
695,496 + Echvi_0619 0.11 -3.5
695,569 - Echvi_0619 0.15 +1.5
695,569 - Echvi_0619 0.15 -2.0
695,596 + Echvi_0619 0.17 -1.6
695,596 + Echvi_0619 0.17 +0.4
695,603 - Echvi_0619 0.17 -2.6
695,603 - Echvi_0619 0.17 -1.4
695,606 + Echvi_0619 0.18 +0.2
695,636 + Echvi_0619 0.19 -2.2
695,636 + Echvi_0619 0.19 -0.4
695,636 + Echvi_0619 0.19 +0.6
695,637 - Echvi_0619 0.19 -2.1
695,637 - Echvi_0619 0.19 -2.0
695,713 - Echvi_0619 0.23 -3.3
695,713 - Echvi_0619 0.23 -1.4
695,713 - Echvi_0619 0.23 -0.7
695,715 - Echvi_0619 0.24 +1.1
695,776 - +2.5
695,776 - Echvi_0619 0.27 -3.8
695,871 - Echvi_0619 0.32 -2.1
696,020 - Echvi_0619 0.40 -1.5
696,069 - Echvi_0619 0.43 -0.8
696,215 + Echvi_0619 0.51 -3.1
696,215 + Echvi_0619 0.51 -0.4
696,355 + Echvi_0619 0.59 -2.0
696,356 - +2.5
696,356 - Echvi_0619 0.59 -1.0
696,361 - Echvi_0619 0.59 +0.5
696,525 + Echvi_0619 0.68 -1.2
696,553 + Echvi_0619 0.70 -0.8
696,578 + Echvi_0619 0.71 -1.1
696,579 - Echvi_0619 0.71 +1.9
696,628 + Echvi_0619 0.74 -0.3
696,643 - Echvi_0619 0.75 -0.3
696,732 + Echvi_0619 0.80 -1.0
696,737 - Echvi_0619 0.80 +1.9
696,784 + Echvi_0619 0.83 -1.1
696,784 + Echvi_0619 0.83 -1.0
696,907 - Echvi_0619 0.90 +1.4
696,957 + -3.1
696,958 - +1.4
696,974 + -3.0
696,975 - +0.4
696,982 + -0.5
696,985 - -1.7
696,985 - -2.4
697,071 + -1.6
697,072 - +2.5
697,073 + +2.5
697,096 + -1.4
697,097 - +2.5
697,097 - +2.5
697,097 - +2.5
697,101 - -0.9
697,154 + +1.3
697,194 - +0.2
697,194 - +2.0
697,217 + +1.9
697,218 - +1.6
697,318 + Echvi_0620 0.20 +3.3
697,318 + Echvi_0620 0.20 +3.2
697,318 + Echvi_0620 0.20 +2.4
697,319 - Echvi_0620 0.20 +2.7
697,319 - Echvi_0620 0.20 +0.6
697,319 - Echvi_0620 0.20 +2.6
697,350 + Echvi_0620 0.24 +1.5
697,427 + Echvi_0620 0.33 +1.6
697,427 + Echvi_0620 0.33 +3.1
697,427 + Echvi_0620 0.33 +4.1
697,427 + Echvi_0620 0.33 -1.3
697,428 - Echvi_0620 0.33 +1.4
697,428 - Echvi_0620 0.33 +2.3
697,428 - Echvi_0620 0.33 +2.1
697,487 + Echvi_0620 0.41 +1.7
697,487 + Echvi_0620 0.41 +3.1
697,487 + Echvi_0620 0.41 +3.4
697,487 + Echvi_0620 0.41 +2.3
697,487 + Echvi_0620 0.41 +2.7
697,487 + Echvi_0620 0.41 +3.8
697,487 + Echvi_0620 0.41 +2.5
697,522 - Echvi_0620 0.45 -1.0
697,542 + Echvi_0620 0.47 +3.1
697,553 + Echvi_0620 0.49 +3.5
697,553 + Echvi_0620 0.49 +2.9
697,553 + Echvi_0620 0.49 +2.2
697,553 + Echvi_0620 0.49 +2.4
697,553 + Echvi_0620 0.49 +3.1
697,554 - Echvi_0620 0.49 +1.9
697,554 - Echvi_0620 0.49 +1.8
697,554 - Echvi_0620 0.49 +1.0
697,575 + Echvi_0620 0.51 +1.6
697,576 - Echvi_0620 0.51 +1.1
697,576 - Echvi_0620 0.51 +2.7
697,623 + Echvi_0620 0.57 +2.2
697,624 - Echvi_0620 0.57 +2.7
697,638 + Echvi_0620 0.59 +1.6
697,691 + Echvi_0620 0.65 +2.2
697,691 + Echvi_0620 0.65 +1.2
697,692 - Echvi_0620 0.66 +0.9
697,692 - Echvi_0620 0.66 +2.5
697,692 - Echvi_0620 0.66 +2.0
697,692 - Echvi_0620 0.66 +2.9
697,692 - Echvi_0620 0.66 +2.3
697,692 - Echvi_0620 0.66 +2.0
697,695 + Echvi_0620 0.66 +3.0
697,695 + Echvi_0620 0.66 +3.7
697,700 + Echvi_0620 0.67 +3.6
697,700 + Echvi_0620 0.67 +1.8
697,700 - Echvi_0620 0.67 +3.0
697,701 - Echvi_0620 0.67 +0.8
697,701 - Echvi_0620 0.67 +2.6
697,701 - Echvi_0620 0.67 +2.6
697,701 - Echvi_0620 0.67 +1.5
697,701 - Echvi_0620 0.67 +2.5
697,701 - Echvi_0620 0.67 +3.4
697,701 - Echvi_0620 0.67 +3.5
697,701 - Echvi_0620 0.67 +0.2
697,736 + Echvi_0620 0.71 +3.2
697,736 + Echvi_0620 0.71 +2.5
697,769 - Echvi_0620 0.75 +2.5
697,781 - Echvi_0620 0.76 +1.4
697,800 + Echvi_0620 0.79 +2.2
697,855 - Echvi_0620 0.85 +2.3
697,884 + Echvi_0620 0.89 +2.6
697,884 + Echvi_0620 0.89 +3.6
697,885 - Echvi_0620 0.89 +3.2
697,885 - Echvi_0620 0.89 +2.5
697,885 - Echvi_0620 0.89 +0.1
697,948 + +1.8
697,948 + +1.8
697,948 + +2.2
697,948 + +2.0
697,948 + +1.9
697,948 + +2.2
697,948 + +1.4
697,949 - +2.4
697,949 - +0.6
697,949 - +1.4
697,952 + +2.8
697,980 + +3.0
697,980 + +2.5
697,980 + +2.1
697,980 + +2.8
697,980 + +3.6
697,980 + +0.0
697,980 + +2.9
697,980 + +2.5
697,981 - +0.9
698,003 + +2.5
698,025 - -0.3
698,031 + +2.6
698,032 - +2.9
698,058 + +3.2
698,059 - +0.7
698,088 + -0.1

Or see this region's nucleotide sequence