Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0561 and Echvi_0562 are separated by 28 nucleotides Echvi_0562 and Echvi_0563 are separated by 184 nucleotides Echvi_0563 and Echvi_0564 are separated by 207 nucleotides
Echvi_0561: Echvi_0561 - Sugar kinases, ribokinase family, at 634,858 to 635,865
_0561
Echvi_0562: Echvi_0562 - hypothetical protein, at 635,894 to 637,057
_0562
Echvi_0563: Echvi_0563 - hypothetical protein, at 637,242 to 637,490
_0563
Echvi_0564: Echvi_0564 - ribosomal protein S12 methylthiotransferase RimO, at 637,698 to 639,011
_0564
Position (kb) 635
636
637
638 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 634.995 kb on + strand, within Echvi_0561 at 635.073 kb on + strand, within Echvi_0561 at 635.265 kb on + strand at 635.275 kb on + strand, within Echvi_0561 at 635.275 kb on + strand, within Echvi_0561 at 635.276 kb on - strand at 635.389 kb on + strand, within Echvi_0561 at 635.389 kb on + strand, within Echvi_0561 at 635.389 kb on + strand, within Echvi_0561 at 635.391 kb on + strand, within Echvi_0561 at 635.393 kb on + strand, within Echvi_0561 at 635.400 kb on - strand, within Echvi_0561 at 635.521 kb on - strand, within Echvi_0561 at 635.524 kb on - strand, within Echvi_0561 at 635.627 kb on + strand, within Echvi_0561 at 635.630 kb on + strand, within Echvi_0561 at 635.903 kb on + strand at 635.908 kb on + strand at 637.049 kb on + strand at 637.108 kb on + strand at 637.109 kb on - strand at 637.128 kb on + strand at 637.129 kb on - strand at 637.129 kb on - strand at 637.129 kb on - strand at 637.188 kb on + strand at 637.188 kb on + strand at 637.189 kb on - strand at 637.211 kb on + strand at 637.211 kb on + strand at 637.258 kb on - strand at 637.317 kb on + strand, within Echvi_0563 at 637.353 kb on - strand, within Echvi_0563 at 637.364 kb on - strand, within Echvi_0563 at 637.376 kb on - strand, within Echvi_0563 at 637.388 kb on + strand, within Echvi_0563 at 637.401 kb on - strand, within Echvi_0563 at 637.401 kb on - strand, within Echvi_0563 at 637.402 kb on + strand, within Echvi_0563 at 637.402 kb on + strand, within Echvi_0563 at 637.412 kb on + strand, within Echvi_0563 at 637.412 kb on + strand, within Echvi_0563 at 637.412 kb on + strand, within Echvi_0563 at 637.412 kb on + strand, within Echvi_0563 at 637.413 kb on - strand, within Echvi_0563 at 637.414 kb on + strand, within Echvi_0563 at 637.425 kb on - strand, within Echvi_0563 at 637.425 kb on - strand, within Echvi_0563 at 637.440 kb on - strand, within Echvi_0563 at 637.457 kb on + strand, within Echvi_0563 at 637.458 kb on - strand, within Echvi_0563 at 637.508 kb on + strand at 637.513 kb on + strand at 637.513 kb on + strand at 637.525 kb on + strand at 637.560 kb on - strand at 637.593 kb on - strand at 637.593 kb on - strand at 637.602 kb on - strand at 637.819 kb on - strand at 637.849 kb on + strand, within Echvi_0564 at 637.850 kb on - strand, within Echvi_0564 at 637.850 kb on - strand, within Echvi_0564 at 637.850 kb on - strand, within Echvi_0564 at 637.907 kb on + strand, within Echvi_0564 at 637.995 kb on - strand, within Echvi_0564 at 637.995 kb on - strand, within Echvi_0564 at 637.995 kb on - strand, within Echvi_0564 at 638.006 kb on + strand, within Echvi_0564 at 638.006 kb on + strand, within Echvi_0564 at 638.006 kb on + strand, within Echvi_0564 at 638.006 kb on + strand, within Echvi_0564 at 638.006 kb on + strand, within Echvi_0564 at 638.007 kb on - strand, within Echvi_0564 at 638.007 kb on - strand, within Echvi_0564 at 638.007 kb on - strand, within Echvi_0564 at 638.007 kb on - strand, within Echvi_0564 at 638.007 kb on - strand, within Echvi_0564 at 638.023 kb on + strand, within Echvi_0564 at 638.027 kb on + strand, within Echvi_0564 at 638.027 kb on + strand, within Echvi_0564 at 638.028 kb on - strand, within Echvi_0564 at 638.028 kb on - strand, within Echvi_0564
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 634,995 + Echvi_0561 0.14 -1.0 635,073 + Echvi_0561 0.21 -0.2 635,265 + +0.5 635,275 + Echvi_0561 0.41 +0.4 635,275 + Echvi_0561 0.41 -0.8 635,276 - +2.5 635,389 + Echvi_0561 0.53 +0.9 635,389 + Echvi_0561 0.53 +1.4 635,389 + Echvi_0561 0.53 -0.0 635,391 + Echvi_0561 0.53 +0.8 635,393 + Echvi_0561 0.53 +0.9 635,400 - Echvi_0561 0.54 -0.3 635,521 - Echvi_0561 0.66 +0.9 635,524 - Echvi_0561 0.66 +0.9 635,627 + Echvi_0561 0.76 +0.6 635,630 + Echvi_0561 0.77 -0.8 635,903 + +2.5 635,908 + +0.5 637,049 + +0.2 637,108 + -0.9 637,109 - -0.0 637,128 + -1.2 637,129 - +0.3 637,129 - +1.6 637,129 - -2.4 637,188 + +0.0 637,188 + -0.3 637,189 - +0.7 637,211 + -2.1 637,211 + -0.8 637,258 - +0.9 637,317 + Echvi_0563 0.30 -1.0 637,353 - Echvi_0563 0.45 +0.2 637,364 - Echvi_0563 0.49 -0.5 637,376 - Echvi_0563 0.54 +0.9 637,388 + Echvi_0563 0.59 +0.5 637,401 - Echvi_0563 0.64 +0.1 637,401 - Echvi_0563 0.64 -3.0 637,402 + Echvi_0563 0.64 -0.1 637,402 + Echvi_0563 0.64 -2.8 637,412 + Echvi_0563 0.68 +0.5 637,412 + Echvi_0563 0.68 +2.6 637,412 + Echvi_0563 0.68 -0.0 637,412 + Echvi_0563 0.68 -1.7 637,413 - Echvi_0563 0.69 +0.9 637,414 + Echvi_0563 0.69 +2.2 637,425 - Echvi_0563 0.73 -2.2 637,425 - Echvi_0563 0.73 +0.9 637,440 - Echvi_0563 0.80 +0.4 637,457 + Echvi_0563 0.86 -1.2 637,458 - Echvi_0563 0.87 +2.5 637,508 + +0.5 637,513 + -3.5 637,513 + -2.7 637,525 + +0.1 637,560 - -2.4 637,593 - +5.1 637,593 - +1.6 637,602 - +1.7 637,819 - -0.9 637,849 + Echvi_0564 0.11 -2.7 637,850 - Echvi_0564 0.12 -1.1 637,850 - Echvi_0564 0.12 -1.3 637,850 - Echvi_0564 0.12 -0.8 637,907 + Echvi_0564 0.16 -2.4 637,995 - Echvi_0564 0.23 -1.2 637,995 - Echvi_0564 0.23 -0.6 637,995 - Echvi_0564 0.23 -0.0 638,006 + Echvi_0564 0.23 +0.9 638,006 + Echvi_0564 0.23 +2.5 638,006 + Echvi_0564 0.23 -1.0 638,006 + Echvi_0564 0.23 +0.9 638,006 + Echvi_0564 0.23 +0.4 638,007 - Echvi_0564 0.24 +0.5 638,007 - Echvi_0564 0.24 -1.1 638,007 - Echvi_0564 0.24 -2.9 638,007 - Echvi_0564 0.24 -2.9 638,007 - Echvi_0564 0.24 +0.0 638,023 + Echvi_0564 0.25 -0.5 638,027 + Echvi_0564 0.25 +2.5 638,027 + Echvi_0564 0.25 -1.6 638,028 - Echvi_0564 0.25 -2.1 638,028 - Echvi_0564 0.25 -0.4
Or see this region's nucleotide sequence