Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0512

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0511 and Echvi_0512 are separated by 325 nucleotidesEchvi_0512 and Echvi_0513 are separated by 80 nucleotides Echvi_0511: Echvi_0511 - Superfamily II DNA and RNA helicases, at 571,483 to 572,733 _0511 Echvi_0512: Echvi_0512 - hypothetical protein, at 573,059 to 573,868 _0512 Echvi_0513: Echvi_0513 - Small-conductance mechanosensitive channel, at 573,949 to 574,845 _0513 Position (kb) 573 574Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 572.150 kb on - strand, within Echvi_0511at 572.155 kb on + strand, within Echvi_0511at 572.156 kb on - strand, within Echvi_0511at 572.156 kb on - strand, within Echvi_0511at 572.158 kb on + strand, within Echvi_0511at 572.166 kb on + strand, within Echvi_0511at 572.167 kb on - strand, within Echvi_0511at 572.167 kb on - strand, within Echvi_0511at 572.197 kb on - strand, within Echvi_0511at 572.468 kb on - strand, within Echvi_0511at 572.578 kb on - strand, within Echvi_0511at 572.628 kb on + strandat 572.655 kb on + strandat 572.732 kb on - strandat 572.732 kb on - strandat 572.810 kb on + strandat 572.811 kb on - strandat 572.811 kb on - strandat 572.811 kb on - strandat 573.047 kb on - strandat 573.047 kb on - strandat 573.047 kb on - strandat 573.047 kb on - strandat 573.067 kb on + strandat 573.109 kb on - strandat 573.160 kb on + strand, within Echvi_0512at 573.160 kb on + strand, within Echvi_0512at 573.161 kb on - strand, within Echvi_0512at 573.161 kb on - strand, within Echvi_0512at 573.161 kb on - strand, within Echvi_0512at 573.161 kb on - strand, within Echvi_0512at 573.166 kb on + strand, within Echvi_0512at 573.167 kb on - strand, within Echvi_0512at 573.186 kb on + strand, within Echvi_0512at 573.222 kb on - strand, within Echvi_0512at 573.247 kb on + strand, within Echvi_0512at 573.311 kb on + strandat 573.311 kb on + strand, within Echvi_0512at 573.461 kb on + strand, within Echvi_0512at 573.464 kb on + strand, within Echvi_0512at 573.471 kb on + strand, within Echvi_0512at 573.493 kb on + strand, within Echvi_0512at 573.494 kb on - strand, within Echvi_0512at 573.505 kb on + strand, within Echvi_0512at 573.563 kb on + strand, within Echvi_0512at 573.642 kb on - strand, within Echvi_0512at 573.880 kb on - strandat 573.890 kb on + strandat 574.026 kb on + strandat 574.030 kb on - strandat 574.060 kb on + strand, within Echvi_0513at 574.061 kb on - strand, within Echvi_0513at 574.062 kb on + strand, within Echvi_0513at 574.062 kb on + strand, within Echvi_0513at 574.063 kb on - strand, within Echvi_0513at 574.063 kb on - strand, within Echvi_0513at 574.067 kb on + strand, within Echvi_0513at 574.067 kb on + strand, within Echvi_0513at 574.183 kb on - strand, within Echvi_0513at 574.187 kb on - strand, within Echvi_0513at 574.242 kb on - strand, within Echvi_0513at 574.296 kb on + strand, within Echvi_0513at 574.333 kb on - strand, within Echvi_0513at 574.333 kb on - strand, within Echvi_0513at 574.350 kb on - strand, within Echvi_0513at 574.355 kb on + strand, within Echvi_0513at 574.355 kb on + strand, within Echvi_0513at 574.355 kb on + strand, within Echvi_0513at 574.432 kb on + strand, within Echvi_0513at 574.432 kb on + strand, within Echvi_0513at 574.432 kb on + strand, within Echvi_0513at 574.432 kb on + strand, within Echvi_0513at 574.433 kb on - strand, within Echvi_0513at 574.433 kb on - strand, within Echvi_0513at 574.433 kb on - strand, within Echvi_0513at 574.469 kb on + strand, within Echvi_0513at 574.470 kb on - strand, within Echvi_0513at 574.470 kb on - strand, within Echvi_0513at 574.470 kb on - strand, within Echvi_0513at 574.511 kb on + strand, within Echvi_0513at 574.523 kb on - strand, within Echvi_0513at 574.612 kb on + strand, within Echvi_0513at 574.613 kb on - strand, within Echvi_0513at 574.613 kb on - strand, within Echvi_0513at 574.646 kb on + strand, within Echvi_0513at 574.658 kb on + strand, within Echvi_0513at 574.658 kb on + strand, within Echvi_0513at 574.658 kb on + strand, within Echvi_0513at 574.679 kb on - strand, within Echvi_0513at 574.679 kb on - strand, within Echvi_0513at 574.774 kb on - strandat 574.775 kb on + strandat 574.775 kb on + strandat 574.775 kb on + strandat 574.776 kb on - strandat 574.792 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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572,150 - Echvi_0511 0.53 +1.4
572,155 + Echvi_0511 0.54 -2.2
572,156 - Echvi_0511 0.54 +2.0
572,156 - Echvi_0511 0.54 +1.1
572,158 + Echvi_0511 0.54 +2.3
572,166 + Echvi_0511 0.55 -1.3
572,167 - Echvi_0511 0.55 +1.3
572,167 - Echvi_0511 0.55 -2.3
572,197 - Echvi_0511 0.57 -0.3
572,468 - Echvi_0511 0.79 +0.9
572,578 - Echvi_0511 0.88 -0.9
572,628 + +0.8
572,655 + +0.5
572,732 - -1.0
572,732 - +0.9
572,810 + +1.7
572,811 - +0.6
572,811 - -2.5
572,811 - +1.1
573,047 - -2.5
573,047 - -0.9
573,047 - -2.2
573,047 - -2.5
573,067 + -0.9
573,109 - -0.6
573,160 + Echvi_0512 0.12 -2.3
573,160 + Echvi_0512 0.12 -1.7
573,161 - Echvi_0512 0.13 +2.6
573,161 - Echvi_0512 0.13 +2.1
573,161 - Echvi_0512 0.13 +1.5
573,161 - Echvi_0512 0.13 +1.7
573,166 + Echvi_0512 0.13 -0.5
573,167 - Echvi_0512 0.13 +1.6
573,186 + Echvi_0512 0.16 -0.7
573,222 - Echvi_0512 0.20 +1.1
573,247 + Echvi_0512 0.23 +0.1
573,311 + +0.9
573,311 + Echvi_0512 0.31 -1.0
573,461 + Echvi_0512 0.50 +0.3
573,464 + Echvi_0512 0.50 -2.1
573,471 + Echvi_0512 0.51 +1.3
573,493 + Echvi_0512 0.54 -2.2
573,494 - Echvi_0512 0.54 -1.6
573,505 + Echvi_0512 0.55 +1.0
573,563 + Echvi_0512 0.62 -0.7
573,642 - Echvi_0512 0.72 -0.4
573,880 - -0.1
573,890 + -3.6
574,026 + +0.7
574,030 - +0.0
574,060 + Echvi_0513 0.12 -0.4
574,061 - Echvi_0513 0.12 +0.7
574,062 + Echvi_0513 0.13 -2.2
574,062 + Echvi_0513 0.13 -0.2
574,063 - Echvi_0513 0.13 +0.4
574,063 - Echvi_0513 0.13 +2.1
574,067 + Echvi_0513 0.13 -1.2
574,067 + Echvi_0513 0.13 -0.6
574,183 - Echvi_0513 0.26 +1.3
574,187 - Echvi_0513 0.27 -1.1
574,242 - Echvi_0513 0.33 +0.1
574,296 + Echvi_0513 0.39 +0.3
574,333 - Echvi_0513 0.43 +1.3
574,333 - Echvi_0513 0.43 -2.0
574,350 - Echvi_0513 0.45 +0.7
574,355 + Echvi_0513 0.45 -0.5
574,355 + Echvi_0513 0.45 +2.5
574,355 + Echvi_0513 0.45 +0.8
574,432 + Echvi_0513 0.54 -1.3
574,432 + Echvi_0513 0.54 -0.3
574,432 + Echvi_0513 0.54 +1.0
574,432 + Echvi_0513 0.54 -2.1
574,433 - Echvi_0513 0.54 +0.9
574,433 - Echvi_0513 0.54 +0.3
574,433 - Echvi_0513 0.54 -2.6
574,469 + Echvi_0513 0.58 +0.1
574,470 - Echvi_0513 0.58 +3.7
574,470 - Echvi_0513 0.58 +0.4
574,470 - Echvi_0513 0.58 +1.6
574,511 + Echvi_0513 0.63 +0.9
574,523 - Echvi_0513 0.64 -2.5
574,612 + Echvi_0513 0.74 +2.1
574,613 - Echvi_0513 0.74 +0.6
574,613 - Echvi_0513 0.74 -1.2
574,646 + Echvi_0513 0.78 +1.1
574,658 + Echvi_0513 0.79 +1.0
574,658 + Echvi_0513 0.79 +0.8
574,658 + Echvi_0513 0.79 +1.8
574,679 - Echvi_0513 0.81 +1.8
574,679 - Echvi_0513 0.81 +0.7
574,774 - -2.3
574,775 + -0.3
574,775 + +0.7
574,775 + +0.1
574,776 - +0.6
574,792 + +0.2

Or see this region's nucleotide sequence