Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0510 and Echvi_0511 are separated by 199 nucleotides Echvi_0511 and Echvi_0512 are separated by 325 nucleotides
Echvi_0510: Echvi_0510 - Transcriptional regulators, at 570,261 to 571,283
_0510
Echvi_0511: Echvi_0511 - Superfamily II DNA and RNA helicases, at 571,483 to 572,733
_0511
Echvi_0512: Echvi_0512 - hypothetical protein, at 573,059 to 573,868
_0512
Position (kb) 571
572
573 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 570.487 kb on - strand, within Echvi_0510 at 570.514 kb on + strand, within Echvi_0510 at 570.543 kb on + strand, within Echvi_0510 at 570.543 kb on + strand, within Echvi_0510 at 570.543 kb on + strand, within Echvi_0510 at 570.553 kb on + strand, within Echvi_0510 at 570.553 kb on + strand, within Echvi_0510 at 570.553 kb on + strand, within Echvi_0510 at 570.554 kb on - strand, within Echvi_0510 at 570.613 kb on + strand, within Echvi_0510 at 570.694 kb on + strand, within Echvi_0510 at 570.694 kb on + strand, within Echvi_0510 at 570.694 kb on + strand, within Echvi_0510 at 570.694 kb on + strand, within Echvi_0510 at 570.694 kb on + strand, within Echvi_0510 at 570.695 kb on - strand, within Echvi_0510 at 570.695 kb on - strand, within Echvi_0510 at 570.695 kb on - strand, within Echvi_0510 at 570.779 kb on + strand, within Echvi_0510 at 570.780 kb on - strand, within Echvi_0510 at 570.892 kb on + strand, within Echvi_0510 at 571.198 kb on + strand at 571.199 kb on - strand at 571.286 kb on + strand at 571.286 kb on + strand at 571.287 kb on - strand at 571.312 kb on - strand at 571.362 kb on + strand at 571.368 kb on + strand at 571.368 kb on + strand at 571.400 kb on + strand at 571.401 kb on - strand at 571.401 kb on - strand at 571.401 kb on - strand at 571.401 kb on - strand at 571.432 kb on - strand at 571.492 kb on - strand at 571.520 kb on + strand at 571.520 kb on + strand at 571.521 kb on - strand at 571.530 kb on - strand at 571.575 kb on + strand at 571.575 kb on + strand at 571.576 kb on - strand at 571.668 kb on + strand, within Echvi_0511 at 571.668 kb on + strand, within Echvi_0511 at 571.668 kb on + strand, within Echvi_0511 at 571.849 kb on - strand, within Echvi_0511 at 571.859 kb on + strand, within Echvi_0511 at 572.004 kb on + strand, within Echvi_0511 at 572.005 kb on - strand, within Echvi_0511 at 572.150 kb on - strand, within Echvi_0511 at 572.155 kb on + strand, within Echvi_0511 at 572.156 kb on - strand, within Echvi_0511 at 572.156 kb on - strand, within Echvi_0511 at 572.158 kb on + strand, within Echvi_0511 at 572.166 kb on + strand, within Echvi_0511 at 572.167 kb on - strand, within Echvi_0511 at 572.167 kb on - strand, within Echvi_0511 at 572.197 kb on - strand, within Echvi_0511 at 572.468 kb on - strand, within Echvi_0511 at 572.578 kb on - strand, within Echvi_0511 at 572.628 kb on + strand at 572.655 kb on + strand at 572.732 kb on - strand at 572.732 kb on - strand at 572.810 kb on + strand at 572.811 kb on - strand at 572.811 kb on - strand at 572.811 kb on - strand at 573.047 kb on - strand at 573.047 kb on - strand at 573.047 kb on - strand at 573.047 kb on - strand at 573.067 kb on + strand at 573.109 kb on - strand at 573.160 kb on + strand, within Echvi_0512 at 573.160 kb on + strand, within Echvi_0512 at 573.161 kb on - strand, within Echvi_0512 at 573.161 kb on - strand, within Echvi_0512 at 573.161 kb on - strand, within Echvi_0512 at 573.161 kb on - strand, within Echvi_0512 at 573.166 kb on + strand, within Echvi_0512 at 573.167 kb on - strand, within Echvi_0512 at 573.186 kb on + strand, within Echvi_0512 at 573.222 kb on - strand, within Echvi_0512 at 573.247 kb on + strand, within Echvi_0512 at 573.311 kb on + strand at 573.311 kb on + strand, within Echvi_0512 at 573.461 kb on + strand, within Echvi_0512 at 573.464 kb on + strand, within Echvi_0512 at 573.471 kb on + strand, within Echvi_0512 at 573.493 kb on + strand, within Echvi_0512 at 573.494 kb on - strand, within Echvi_0512 at 573.505 kb on + strand, within Echvi_0512 at 573.563 kb on + strand, within Echvi_0512 at 573.642 kb on - strand, within Echvi_0512
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 570,487 - Echvi_0510 0.22 +3.2 570,514 + Echvi_0510 0.25 +0.1 570,543 + Echvi_0510 0.28 +1.2 570,543 + Echvi_0510 0.28 -0.7 570,543 + Echvi_0510 0.28 +1.1 570,553 + Echvi_0510 0.29 -2.1 570,553 + Echvi_0510 0.29 -2.7 570,553 + Echvi_0510 0.29 +1.0 570,554 - Echvi_0510 0.29 -0.1 570,613 + Echvi_0510 0.34 -1.2 570,694 + Echvi_0510 0.42 -1.6 570,694 + Echvi_0510 0.42 -2.1 570,694 + Echvi_0510 0.42 +0.1 570,694 + Echvi_0510 0.42 -1.1 570,694 + Echvi_0510 0.42 -1.9 570,695 - Echvi_0510 0.42 +0.3 570,695 - Echvi_0510 0.42 +1.9 570,695 - Echvi_0510 0.42 -0.1 570,779 + Echvi_0510 0.51 -2.1 570,780 - Echvi_0510 0.51 -0.2 570,892 + Echvi_0510 0.62 -3.3 571,198 + +0.7 571,199 - -2.9 571,286 + -1.9 571,286 + -0.4 571,287 - -2.1 571,312 - +0.1 571,362 + -0.5 571,368 + -1.1 571,368 + -0.5 571,400 + +0.3 571,401 - +0.2 571,401 - +0.9 571,401 - +0.3 571,401 - +0.1 571,432 - -0.3 571,492 - -0.6 571,520 + -2.1 571,520 + -2.9 571,521 - -2.2 571,530 - -0.2 571,575 + -2.7 571,575 + -0.6 571,576 - +0.3 571,668 + Echvi_0511 0.15 +1.0 571,668 + Echvi_0511 0.15 -0.7 571,668 + Echvi_0511 0.15 +1.0 571,849 - Echvi_0511 0.29 +0.4 571,859 + Echvi_0511 0.30 -0.5 572,004 + Echvi_0511 0.42 -1.1 572,005 - Echvi_0511 0.42 +0.1 572,150 - Echvi_0511 0.53 +1.4 572,155 + Echvi_0511 0.54 -2.2 572,156 - Echvi_0511 0.54 +2.0 572,156 - Echvi_0511 0.54 +1.1 572,158 + Echvi_0511 0.54 +2.3 572,166 + Echvi_0511 0.55 -1.3 572,167 - Echvi_0511 0.55 +1.3 572,167 - Echvi_0511 0.55 -2.3 572,197 - Echvi_0511 0.57 -0.3 572,468 - Echvi_0511 0.79 +0.9 572,578 - Echvi_0511 0.88 -0.9 572,628 + +0.8 572,655 + +0.5 572,732 - -1.0 572,732 - +0.9 572,810 + +1.7 572,811 - +0.6 572,811 - -2.5 572,811 - +1.1 573,047 - -2.5 573,047 - -0.9 573,047 - -2.2 573,047 - -2.5 573,067 + -0.9 573,109 - -0.6 573,160 + Echvi_0512 0.12 -2.3 573,160 + Echvi_0512 0.12 -1.7 573,161 - Echvi_0512 0.13 +2.6 573,161 - Echvi_0512 0.13 +2.1 573,161 - Echvi_0512 0.13 +1.5 573,161 - Echvi_0512 0.13 +1.7 573,166 + Echvi_0512 0.13 -0.5 573,167 - Echvi_0512 0.13 +1.6 573,186 + Echvi_0512 0.16 -0.7 573,222 - Echvi_0512 0.20 +1.1 573,247 + Echvi_0512 0.23 +0.1 573,311 + +0.9 573,311 + Echvi_0512 0.31 -1.0 573,461 + Echvi_0512 0.50 +0.3 573,464 + Echvi_0512 0.50 -2.1 573,471 + Echvi_0512 0.51 +1.3 573,493 + Echvi_0512 0.54 -2.2 573,494 - Echvi_0512 0.54 -1.6 573,505 + Echvi_0512 0.55 +1.0 573,563 + Echvi_0512 0.62 -0.7 573,642 - Echvi_0512 0.72 -0.4
Or see this region's nucleotide sequence