Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0507 and Echvi_0508 are separated by 305 nucleotides Echvi_0508 and Echvi_0509 are separated by 109 nucleotides
Echvi_0507: Echvi_0507 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 566,351 to 567,364
_0507
Echvi_0508: Echvi_0508 - L-fucose:H+ symporter permease, at 567,670 to 568,965
_0508
Echvi_0509: Echvi_0509 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 569,075 to 570,109
_0509
Position (kb) 567
568
569 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 566.746 kb on + strand, within Echvi_0507 at 566.747 kb on - strand, within Echvi_0507 at 566.747 kb on - strand, within Echvi_0507 at 566.780 kb on + strand, within Echvi_0507 at 566.780 kb on + strand, within Echvi_0507 at 567.044 kb on + strand, within Echvi_0507 at 567.055 kb on + strand, within Echvi_0507 at 567.055 kb on + strand, within Echvi_0507 at 567.161 kb on + strand, within Echvi_0507 at 567.195 kb on - strand, within Echvi_0507 at 567.278 kb on + strand at 567.281 kb on - strand at 567.322 kb on + strand at 567.322 kb on + strand at 567.323 kb on - strand at 567.323 kb on - strand at 567.353 kb on + strand at 567.354 kb on - strand at 567.383 kb on - strand at 567.383 kb on - strand at 567.387 kb on - strand at 567.403 kb on + strand at 567.502 kb on + strand at 567.503 kb on - strand at 567.510 kb on + strand at 567.539 kb on + strand at 567.558 kb on + strand at 567.611 kb on + strand at 567.612 kb on - strand at 567.612 kb on - strand at 567.667 kb on - strand at 567.667 kb on - strand at 567.672 kb on - strand at 567.747 kb on - strand at 567.793 kb on - strand at 567.870 kb on + strand, within Echvi_0508 at 567.871 kb on - strand, within Echvi_0508 at 567.874 kb on - strand, within Echvi_0508 at 567.874 kb on - strand, within Echvi_0508 at 567.969 kb on + strand, within Echvi_0508 at 567.969 kb on + strand, within Echvi_0508 at 567.970 kb on - strand, within Echvi_0508 at 568.039 kb on - strand, within Echvi_0508 at 568.066 kb on - strand at 568.086 kb on + strand, within Echvi_0508 at 568.094 kb on - strand, within Echvi_0508 at 568.094 kb on - strand, within Echvi_0508 at 568.094 kb on - strand, within Echvi_0508 at 568.110 kb on - strand, within Echvi_0508 at 568.110 kb on - strand, within Echvi_0508 at 568.110 kb on - strand, within Echvi_0508 at 568.157 kb on + strand, within Echvi_0508 at 568.167 kb on + strand, within Echvi_0508 at 568.170 kb on - strand, within Echvi_0508 at 568.177 kb on + strand, within Echvi_0508 at 568.196 kb on - strand, within Echvi_0508 at 568.200 kb on - strand, within Echvi_0508 at 568.361 kb on + strand, within Echvi_0508 at 568.362 kb on - strand, within Echvi_0508 at 568.362 kb on - strand, within Echvi_0508 at 568.362 kb on - strand, within Echvi_0508 at 568.362 kb on - strand, within Echvi_0508 at 568.397 kb on - strand, within Echvi_0508 at 568.477 kb on - strand, within Echvi_0508 at 568.574 kb on + strand, within Echvi_0508 at 568.574 kb on + strand, within Echvi_0508 at 568.574 kb on + strand, within Echvi_0508 at 568.575 kb on - strand, within Echvi_0508 at 568.575 kb on - strand, within Echvi_0508 at 568.623 kb on - strand, within Echvi_0508 at 568.623 kb on - strand, within Echvi_0508 at 568.623 kb on - strand, within Echvi_0508 at 568.646 kb on + strand, within Echvi_0508 at 568.647 kb on - strand, within Echvi_0508 at 568.726 kb on - strand, within Echvi_0508 at 568.727 kb on + strand, within Echvi_0508 at 568.728 kb on - strand, within Echvi_0508 at 568.728 kb on - strand, within Echvi_0508 at 568.731 kb on + strand, within Echvi_0508 at 568.732 kb on - strand, within Echvi_0508 at 568.733 kb on + strand, within Echvi_0508 at 568.745 kb on + strand, within Echvi_0508 at 568.745 kb on + strand, within Echvi_0508 at 568.746 kb on - strand, within Echvi_0508 at 568.775 kb on + strand, within Echvi_0508 at 568.776 kb on - strand, within Echvi_0508 at 568.801 kb on - strand, within Echvi_0508 at 568.816 kb on - strand, within Echvi_0508 at 568.857 kb on + strand at 568.858 kb on - strand at 568.858 kb on - strand at 568.911 kb on + strand at 568.911 kb on + strand at 568.911 kb on + strand at 568.911 kb on + strand at 568.911 kb on + strand at 568.911 kb on + strand at 568.912 kb on - strand at 568.912 kb on - strand at 568.912 kb on - strand at 568.912 kb on - strand at 568.912 kb on - strand at 568.912 kb on - strand at 568.936 kb on + strand at 568.950 kb on + strand at 568.974 kb on + strand at 569.018 kb on + strand at 569.029 kb on + strand at 569.353 kb on - strand, within Echvi_0509 at 569.353 kb on - strand, within Echvi_0509 at 569.353 kb on - strand, within Echvi_0509 at 569.353 kb on - strand, within Echvi_0509 at 569.404 kb on + strand, within Echvi_0509 at 569.404 kb on + strand, within Echvi_0509 at 569.405 kb on - strand, within Echvi_0509 at 569.405 kb on - strand, within Echvi_0509 at 569.434 kb on + strand, within Echvi_0509 at 569.434 kb on + strand, within Echvi_0509 at 569.601 kb on + strand, within Echvi_0509 at 569.664 kb on + strand, within Echvi_0509 at 569.664 kb on + strand, within Echvi_0509 at 569.664 kb on + strand, within Echvi_0509 at 569.664 kb on + strand, within Echvi_0509 at 569.665 kb on - strand, within Echvi_0509 at 569.665 kb on - strand, within Echvi_0509 at 569.703 kb on + strand, within Echvi_0509 at 569.755 kb on - strand, within Echvi_0509 at 569.938 kb on - strand, within Echvi_0509
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 566,746 + Echvi_0507 0.39 -0.5 566,747 - Echvi_0507 0.39 +1.0 566,747 - Echvi_0507 0.39 +1.6 566,780 + Echvi_0507 0.42 +4.0 566,780 + Echvi_0507 0.42 +0.6 567,044 + Echvi_0507 0.68 -1.9 567,055 + Echvi_0507 0.69 -1.0 567,055 + Echvi_0507 0.69 -0.9 567,161 + Echvi_0507 0.80 -1.2 567,195 - Echvi_0507 0.83 -2.6 567,278 + -3.3 567,281 - +0.9 567,322 + -0.3 567,322 + -2.2 567,323 - -1.2 567,323 - -1.3 567,353 + -0.6 567,354 - -3.7 567,383 - -1.7 567,383 - -0.1 567,387 - +3.6 567,403 + -3.2 567,502 + -0.3 567,503 - +0.9 567,510 + +4.3 567,539 + -1.3 567,558 + +1.8 567,611 + +0.7 567,612 - -2.3 567,612 - +0.0 567,667 - +0.1 567,667 - +1.0 567,672 - -0.5 567,747 - +2.6 567,793 - -1.3 567,870 + Echvi_0508 0.15 -2.4 567,871 - Echvi_0508 0.16 +2.3 567,874 - Echvi_0508 0.16 +1.9 567,874 - Echvi_0508 0.16 -1.9 567,969 + Echvi_0508 0.23 +0.7 567,969 + Echvi_0508 0.23 -1.3 567,970 - Echvi_0508 0.23 -2.6 568,039 - Echvi_0508 0.28 -2.1 568,066 - +1.5 568,086 + Echvi_0508 0.32 +1.3 568,094 - Echvi_0508 0.33 +0.9 568,094 - Echvi_0508 0.33 -1.0 568,094 - Echvi_0508 0.33 -0.5 568,110 - Echvi_0508 0.34 -0.3 568,110 - Echvi_0508 0.34 +1.4 568,110 - Echvi_0508 0.34 +0.4 568,157 + Echvi_0508 0.38 +2.0 568,167 + Echvi_0508 0.38 -2.3 568,170 - Echvi_0508 0.39 -0.5 568,177 + Echvi_0508 0.39 +1.4 568,196 - Echvi_0508 0.41 -0.1 568,200 - Echvi_0508 0.41 -1.7 568,361 + Echvi_0508 0.53 -2.5 568,362 - Echvi_0508 0.53 -1.7 568,362 - Echvi_0508 0.53 -3.1 568,362 - Echvi_0508 0.53 +2.5 568,362 - Echvi_0508 0.53 +0.6 568,397 - Echvi_0508 0.56 -2.4 568,477 - Echvi_0508 0.62 +0.3 568,574 + Echvi_0508 0.70 -0.1 568,574 + Echvi_0508 0.70 -1.7 568,574 + Echvi_0508 0.70 -1.3 568,575 - Echvi_0508 0.70 -0.0 568,575 - Echvi_0508 0.70 -0.3 568,623 - Echvi_0508 0.74 -1.1 568,623 - Echvi_0508 0.74 -1.0 568,623 - Echvi_0508 0.74 +1.8 568,646 + Echvi_0508 0.75 -0.5 568,647 - Echvi_0508 0.75 +0.5 568,726 - Echvi_0508 0.81 +0.3 568,727 + Echvi_0508 0.82 -1.2 568,728 - Echvi_0508 0.82 -0.4 568,728 - Echvi_0508 0.82 -0.5 568,731 + Echvi_0508 0.82 -1.0 568,732 - Echvi_0508 0.82 +0.3 568,733 + Echvi_0508 0.82 -1.9 568,745 + Echvi_0508 0.83 +2.9 568,745 + Echvi_0508 0.83 -2.0 568,746 - Echvi_0508 0.83 +1.3 568,775 + Echvi_0508 0.85 +2.3 568,776 - Echvi_0508 0.85 -0.1 568,801 - Echvi_0508 0.87 +0.8 568,816 - Echvi_0508 0.88 -1.2 568,857 + +0.0 568,858 - +0.9 568,858 - +1.9 568,911 + -0.3 568,911 + -0.1 568,911 + +2.3 568,911 + -0.7 568,911 + +2.0 568,911 + +1.4 568,912 - +0.1 568,912 - +3.6 568,912 - +2.8 568,912 - -0.6 568,912 - +0.1 568,912 - +0.4 568,936 + +0.1 568,950 + -0.3 568,974 + -0.3 569,018 + +0.1 569,029 + +1.8 569,353 - Echvi_0509 0.27 +2.7 569,353 - Echvi_0509 0.27 -1.3 569,353 - Echvi_0509 0.27 +1.0 569,353 - Echvi_0509 0.27 +0.6 569,404 + Echvi_0509 0.32 -2.7 569,404 + Echvi_0509 0.32 -0.6 569,405 - Echvi_0509 0.32 -1.5 569,405 - Echvi_0509 0.32 +0.2 569,434 + Echvi_0509 0.35 -2.4 569,434 + Echvi_0509 0.35 +0.3 569,601 + Echvi_0509 0.51 +0.3 569,664 + Echvi_0509 0.57 +2.5 569,664 + Echvi_0509 0.57 +1.7 569,664 + Echvi_0509 0.57 +1.7 569,664 + Echvi_0509 0.57 +1.3 569,665 - Echvi_0509 0.57 -0.5 569,665 - Echvi_0509 0.57 -0.4 569,703 + Echvi_0509 0.61 +0.5 569,755 - Echvi_0509 0.66 -1.9 569,938 - Echvi_0509 0.83 -2.2
Or see this region's nucleotide sequence