Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0440 and Echvi_0441 are separated by 785 nucleotides Echvi_0441 and Echvi_0442 are separated by 6 nucleotides
Echvi_0440: Echvi_0440 - DNA repair proteins, at 478,697 to 479,167
_0440
Echvi_0441: Echvi_0441 - Predicted ATP-dependent endonuclease of the OLD family, at 479,953 to 481,680
_0441
Echvi_0442: Echvi_0442 - Superfamily I DNA and RNA helicases, at 481,687 to 483,507
_0442
Position (kb) 479
480
481
482 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 479.447 kb on - strand at 479.475 kb on + strand at 479.475 kb on + strand at 479.475 kb on + strand at 479.509 kb on + strand at 479.509 kb on + strand at 479.515 kb on + strand at 479.515 kb on + strand at 479.575 kb on + strand at 479.576 kb on - strand at 479.587 kb on + strand at 479.588 kb on - strand at 479.599 kb on - strand at 479.622 kb on + strand at 479.624 kb on + strand at 479.625 kb on - strand at 479.647 kb on - strand at 479.655 kb on + strand at 479.691 kb on + strand at 479.703 kb on + strand at 479.719 kb on + strand at 479.735 kb on - strand at 479.735 kb on - strand at 479.736 kb on + strand at 479.736 kb on + strand at 479.737 kb on - strand at 479.742 kb on + strand at 479.743 kb on - strand at 479.816 kb on + strand at 479.817 kb on - strand at 479.936 kb on + strand at 479.936 kb on + strand at 479.937 kb on - strand at 479.937 kb on - strand at 479.937 kb on - strand at 479.938 kb on + strand at 479.938 kb on + strand at 479.938 kb on + strand at 479.938 kb on + strand at 479.938 kb on + strand at 479.939 kb on - strand at 479.939 kb on - strand at 479.939 kb on - strand at 480.026 kb on + strand at 480.026 kb on + strand at 480.026 kb on + strand at 480.026 kb on + strand at 480.026 kb on + strand at 480.027 kb on - strand at 480.030 kb on - strand at 480.035 kb on + strand at 480.035 kb on + strand at 480.042 kb on + strand at 480.045 kb on + strand at 480.046 kb on - strand at 480.046 kb on - strand at 480.046 kb on - strand at 480.049 kb on - strand at 480.065 kb on + strand at 480.065 kb on + strand at 480.089 kb on + strand at 480.099 kb on + strand at 480.100 kb on - strand at 480.100 kb on - strand at 480.140 kb on - strand, within Echvi_0441 at 480.150 kb on - strand, within Echvi_0441 at 480.151 kb on + strand, within Echvi_0441 at 480.156 kb on + strand, within Echvi_0441 at 480.157 kb on - strand, within Echvi_0441 at 480.191 kb on + strand, within Echvi_0441 at 480.192 kb on - strand, within Echvi_0441 at 480.201 kb on - strand, within Echvi_0441 at 480.212 kb on + strand, within Echvi_0441 at 480.238 kb on - strand, within Echvi_0441 at 480.245 kb on - strand, within Echvi_0441 at 480.248 kb on + strand, within Echvi_0441 at 480.248 kb on + strand, within Echvi_0441 at 480.249 kb on - strand, within Echvi_0441 at 480.262 kb on - strand, within Echvi_0441 at 480.318 kb on + strand, within Echvi_0441 at 480.355 kb on + strand, within Echvi_0441 at 480.356 kb on - strand, within Echvi_0441 at 480.420 kb on + strand, within Echvi_0441 at 480.421 kb on - strand, within Echvi_0441 at 480.421 kb on - strand, within Echvi_0441 at 480.428 kb on + strand, within Echvi_0441 at 480.474 kb on - strand, within Echvi_0441 at 480.474 kb on - strand, within Echvi_0441 at 480.474 kb on - strand, within Echvi_0441 at 480.483 kb on - strand, within Echvi_0441 at 480.504 kb on - strand, within Echvi_0441 at 480.528 kb on - strand, within Echvi_0441 at 480.528 kb on - strand, within Echvi_0441 at 480.528 kb on - strand, within Echvi_0441 at 480.531 kb on + strand, within Echvi_0441 at 480.592 kb on - strand, within Echvi_0441 at 480.592 kb on - strand, within Echvi_0441 at 480.610 kb on - strand, within Echvi_0441 at 480.627 kb on + strand, within Echvi_0441 at 480.649 kb on - strand, within Echvi_0441 at 480.650 kb on + strand, within Echvi_0441 at 480.651 kb on - strand, within Echvi_0441 at 480.651 kb on - strand, within Echvi_0441 at 480.705 kb on - strand, within Echvi_0441 at 480.748 kb on - strand, within Echvi_0441 at 480.748 kb on - strand, within Echvi_0441 at 480.748 kb on - strand, within Echvi_0441 at 480.756 kb on + strand, within Echvi_0441 at 480.756 kb on + strand, within Echvi_0441 at 480.762 kb on + strand, within Echvi_0441 at 480.794 kb on - strand, within Echvi_0441 at 480.796 kb on - strand, within Echvi_0441 at 480.804 kb on + strand, within Echvi_0441 at 480.805 kb on - strand, within Echvi_0441 at 480.810 kb on + strand, within Echvi_0441 at 480.811 kb on - strand, within Echvi_0441 at 480.811 kb on - strand, within Echvi_0441 at 480.816 kb on + strand, within Echvi_0441 at 480.820 kb on - strand, within Echvi_0441 at 480.849 kb on - strand, within Echvi_0441 at 480.870 kb on - strand, within Echvi_0441 at 480.872 kb on + strand, within Echvi_0441 at 480.873 kb on - strand, within Echvi_0441 at 480.873 kb on - strand, within Echvi_0441 at 480.910 kb on + strand, within Echvi_0441 at 480.913 kb on - strand, within Echvi_0441 at 480.913 kb on - strand, within Echvi_0441 at 480.924 kb on + strand, within Echvi_0441 at 480.924 kb on + strand, within Echvi_0441 at 480.925 kb on - strand, within Echvi_0441 at 480.925 kb on - strand, within Echvi_0441 at 480.962 kb on + strand, within Echvi_0441 at 480.962 kb on + strand, within Echvi_0441 at 480.982 kb on + strand, within Echvi_0441 at 480.982 kb on + strand, within Echvi_0441 at 480.983 kb on - strand, within Echvi_0441 at 480.983 kb on - strand, within Echvi_0441 at 480.987 kb on + strand, within Echvi_0441 at 480.987 kb on + strand, within Echvi_0441 at 481.015 kb on - strand, within Echvi_0441 at 481.036 kb on - strand, within Echvi_0441 at 481.041 kb on + strand, within Echvi_0441 at 481.041 kb on + strand, within Echvi_0441 at 481.041 kb on + strand, within Echvi_0441 at 481.042 kb on - strand, within Echvi_0441 at 481.093 kb on + strand, within Echvi_0441 at 481.096 kb on - strand, within Echvi_0441 at 481.146 kb on + strand, within Echvi_0441 at 481.147 kb on - strand, within Echvi_0441 at 481.203 kb on - strand, within Echvi_0441 at 481.203 kb on - strand, within Echvi_0441 at 481.226 kb on - strand, within Echvi_0441 at 481.250 kb on + strand, within Echvi_0441 at 481.250 kb on + strand, within Echvi_0441 at 481.256 kb on + strand, within Echvi_0441 at 481.256 kb on + strand, within Echvi_0441 at 481.256 kb on + strand, within Echvi_0441 at 481.257 kb on - strand, within Echvi_0441 at 481.257 kb on - strand, within Echvi_0441 at 481.257 kb on - strand, within Echvi_0441 at 481.257 kb on - strand, within Echvi_0441 at 481.317 kb on + strand, within Echvi_0441 at 481.334 kb on + strand, within Echvi_0441 at 481.335 kb on - strand, within Echvi_0441 at 481.342 kb on - strand, within Echvi_0441 at 481.351 kb on - strand, within Echvi_0441 at 481.382 kb on + strand, within Echvi_0441 at 481.383 kb on - strand, within Echvi_0441 at 481.431 kb on - strand, within Echvi_0441 at 481.438 kb on - strand, within Echvi_0441 at 481.492 kb on - strand, within Echvi_0441 at 481.492 kb on - strand, within Echvi_0441 at 481.492 kb on - strand, within Echvi_0441 at 481.492 kb on - strand, within Echvi_0441 at 481.493 kb on + strand, within Echvi_0441 at 481.494 kb on - strand, within Echvi_0441 at 481.494 kb on - strand, within Echvi_0441 at 481.494 kb on - strand, within Echvi_0441 at 481.494 kb on - strand, within Echvi_0441 at 481.497 kb on - strand, within Echvi_0441 at 481.664 kb on + strand at 481.665 kb on - strand at 481.706 kb on + strand at 481.794 kb on + strand at 481.800 kb on - strand at 481.869 kb on + strand, within Echvi_0442 at 481.869 kb on + strand, within Echvi_0442 at 481.870 kb on - strand, within Echvi_0442 at 481.894 kb on - strand, within Echvi_0442 at 481.911 kb on - strand, within Echvi_0442 at 481.911 kb on - strand, within Echvi_0442 at 481.939 kb on - strand, within Echvi_0442 at 481.947 kb on + strand, within Echvi_0442 at 481.947 kb on + strand, within Echvi_0442 at 481.947 kb on + strand, within Echvi_0442 at 481.947 kb on + strand, within Echvi_0442 at 481.947 kb on + strand, within Echvi_0442 at 481.951 kb on + strand, within Echvi_0442 at 481.961 kb on - strand, within Echvi_0442 at 481.991 kb on - strand, within Echvi_0442 at 481.991 kb on - strand, within Echvi_0442 at 482.025 kb on - strand, within Echvi_0442 at 482.047 kb on - strand, within Echvi_0442 at 482.136 kb on + strand, within Echvi_0442 at 482.139 kb on + strand, within Echvi_0442 at 482.218 kb on - strand, within Echvi_0442 at 482.225 kb on + strand, within Echvi_0442 at 482.238 kb on - strand, within Echvi_0442 at 482.241 kb on + strand, within Echvi_0442 at 482.241 kb on + strand, within Echvi_0442 at 482.259 kb on - strand, within Echvi_0442 at 482.303 kb on + strand, within Echvi_0442 at 482.303 kb on + strand, within Echvi_0442 at 482.306 kb on + strand, within Echvi_0442 at 482.323 kb on - strand, within Echvi_0442 at 482.328 kb on + strand, within Echvi_0442 at 482.328 kb on + strand, within Echvi_0442 at 482.328 kb on + strand, within Echvi_0442 at 482.328 kb on + strand, within Echvi_0442 at 482.329 kb on - strand, within Echvi_0442 at 482.376 kb on - strand, within Echvi_0442 at 482.397 kb on + strand, within Echvi_0442 at 482.475 kb on + strand, within Echvi_0442 at 482.475 kb on + strand, within Echvi_0442 at 482.522 kb on - strand, within Echvi_0442 at 482.556 kb on + strand, within Echvi_0442 at 482.557 kb on - strand, within Echvi_0442 at 482.581 kb on - strand, within Echvi_0442 at 482.581 kb on - strand, within Echvi_0442 at 482.585 kb on + strand, within Echvi_0442 at 482.585 kb on + strand, within Echvi_0442 at 482.586 kb on - strand, within Echvi_0442 at 482.628 kb on - strand, within Echvi_0442 at 482.655 kb on - strand, within Echvi_0442
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 479,447 - -0.5 479,475 + +1.2 479,475 + -2.6 479,475 + -0.4 479,509 + -2.0 479,509 + +0.1 479,515 + -0.4 479,515 + -2.5 479,575 + -1.0 479,576 - +1.3 479,587 + +1.5 479,588 - -2.4 479,599 - -0.7 479,622 + -3.0 479,624 + -2.0 479,625 - +1.3 479,647 - +0.1 479,655 + -0.3 479,691 + -0.6 479,703 + -1.1 479,719 + -1.2 479,735 - +0.1 479,735 - +1.9 479,736 + +2.5 479,736 + -1.5 479,737 - -1.5 479,742 + -0.2 479,743 - -0.4 479,816 + -1.9 479,817 - -0.1 479,936 + -0.7 479,936 + +0.1 479,937 - +0.1 479,937 - +0.9 479,937 - -1.5 479,938 + -2.7 479,938 + -3.1 479,938 + +0.6 479,938 + -0.8 479,938 + -1.2 479,939 - -0.0 479,939 - +0.5 479,939 - +2.6 480,026 + -1.9 480,026 + +0.0 480,026 + -1.7 480,026 + +1.7 480,026 + -0.3 480,027 - +0.2 480,030 - -0.7 480,035 + -0.2 480,035 + -1.1 480,042 + +1.8 480,045 + +1.1 480,046 - +1.2 480,046 - -1.4 480,046 - +2.0 480,049 - +0.1 480,065 + -1.1 480,065 + -0.8 480,089 + -2.9 480,099 + +0.5 480,100 - -0.7 480,100 - -0.4 480,140 - Echvi_0441 0.11 -0.2 480,150 - Echvi_0441 0.11 +1.5 480,151 + Echvi_0441 0.11 -1.3 480,156 + Echvi_0441 0.12 +0.2 480,157 - Echvi_0441 0.12 -1.7 480,191 + Echvi_0441 0.14 -2.7 480,192 - Echvi_0441 0.14 +0.9 480,201 - Echvi_0441 0.14 -1.9 480,212 + Echvi_0441 0.15 -3.6 480,238 - Echvi_0441 0.16 +2.0 480,245 - Echvi_0441 0.17 +1.2 480,248 + Echvi_0441 0.17 -1.0 480,248 + Echvi_0441 0.17 -0.2 480,249 - Echvi_0441 0.17 +0.9 480,262 - Echvi_0441 0.18 -2.8 480,318 + Echvi_0441 0.21 -1.2 480,355 + Echvi_0441 0.23 +1.6 480,356 - Echvi_0441 0.23 +0.7 480,420 + Echvi_0441 0.27 +0.1 480,421 - Echvi_0441 0.27 -0.6 480,421 - Echvi_0441 0.27 +1.3 480,428 + Echvi_0441 0.27 -4.0 480,474 - Echvi_0441 0.30 +0.5 480,474 - Echvi_0441 0.30 +0.4 480,474 - Echvi_0441 0.30 +2.0 480,483 - Echvi_0441 0.31 +0.4 480,504 - Echvi_0441 0.32 +0.6 480,528 - Echvi_0441 0.33 +1.3 480,528 - Echvi_0441 0.33 -1.9 480,528 - Echvi_0441 0.33 +0.6 480,531 + Echvi_0441 0.33 -1.3 480,592 - Echvi_0441 0.37 +1.0 480,592 - Echvi_0441 0.37 -3.0 480,610 - Echvi_0441 0.38 -1.5 480,627 + Echvi_0441 0.39 +0.6 480,649 - Echvi_0441 0.40 +1.8 480,650 + Echvi_0441 0.40 -0.7 480,651 - Echvi_0441 0.40 +0.3 480,651 - Echvi_0441 0.40 +1.4 480,705 - Echvi_0441 0.44 -2.6 480,748 - Echvi_0441 0.46 +2.2 480,748 - Echvi_0441 0.46 +0.8 480,748 - Echvi_0441 0.46 -0.7 480,756 + Echvi_0441 0.46 -2.2 480,756 + Echvi_0441 0.46 +1.7 480,762 + Echvi_0441 0.47 +0.9 480,794 - Echvi_0441 0.49 +0.1 480,796 - Echvi_0441 0.49 -0.7 480,804 + Echvi_0441 0.49 -1.9 480,805 - Echvi_0441 0.49 +0.8 480,810 + Echvi_0441 0.50 +3.5 480,811 - Echvi_0441 0.50 +1.3 480,811 - Echvi_0441 0.50 -2.2 480,816 + Echvi_0441 0.50 -0.5 480,820 - Echvi_0441 0.50 -0.5 480,849 - Echvi_0441 0.52 +0.7 480,870 - Echvi_0441 0.53 +1.3 480,872 + Echvi_0441 0.53 +1.5 480,873 - Echvi_0441 0.53 +1.1 480,873 - Echvi_0441 0.53 -0.5 480,910 + Echvi_0441 0.55 +0.6 480,913 - Echvi_0441 0.56 +0.3 480,913 - Echvi_0441 0.56 -1.7 480,924 + Echvi_0441 0.56 +0.2 480,924 + Echvi_0441 0.56 -0.1 480,925 - Echvi_0441 0.56 +1.1 480,925 - Echvi_0441 0.56 +1.7 480,962 + Echvi_0441 0.58 +0.1 480,962 + Echvi_0441 0.58 -0.7 480,982 + Echvi_0441 0.60 -0.9 480,982 + Echvi_0441 0.60 +0.3 480,983 - Echvi_0441 0.60 -0.1 480,983 - Echvi_0441 0.60 -0.6 480,987 + Echvi_0441 0.60 +0.5 480,987 + Echvi_0441 0.60 -1.0 481,015 - Echvi_0441 0.61 -2.3 481,036 - Echvi_0441 0.63 -0.3 481,041 + Echvi_0441 0.63 +1.1 481,041 + Echvi_0441 0.63 +0.7 481,041 + Echvi_0441 0.63 -2.7 481,042 - Echvi_0441 0.63 +2.5 481,093 + Echvi_0441 0.66 +0.1 481,096 - Echvi_0441 0.66 -2.3 481,146 + Echvi_0441 0.69 -0.6 481,147 - Echvi_0441 0.69 +0.3 481,203 - Echvi_0441 0.72 +2.0 481,203 - Echvi_0441 0.72 +1.1 481,226 - Echvi_0441 0.74 +3.2 481,250 + Echvi_0441 0.75 -0.3 481,250 + Echvi_0441 0.75 -1.5 481,256 + Echvi_0441 0.75 -0.8 481,256 + Echvi_0441 0.75 +0.5 481,256 + Echvi_0441 0.75 -1.9 481,257 - Echvi_0441 0.75 +0.3 481,257 - Echvi_0441 0.75 -2.4 481,257 - Echvi_0441 0.75 +1.4 481,257 - Echvi_0441 0.75 +0.0 481,317 + Echvi_0441 0.79 -1.0 481,334 + Echvi_0441 0.80 -0.1 481,335 - Echvi_0441 0.80 +2.5 481,342 - Echvi_0441 0.80 -0.3 481,351 - Echvi_0441 0.81 +1.2 481,382 + Echvi_0441 0.83 -1.8 481,383 - Echvi_0441 0.83 +0.5 481,431 - Echvi_0441 0.86 -0.2 481,438 - Echvi_0441 0.86 -2.7 481,492 - Echvi_0441 0.89 -0.7 481,492 - Echvi_0441 0.89 -1.4 481,492 - Echvi_0441 0.89 +0.5 481,492 - Echvi_0441 0.89 -0.9 481,493 + Echvi_0441 0.89 +1.5 481,494 - Echvi_0441 0.89 -1.0 481,494 - Echvi_0441 0.89 -0.5 481,494 - Echvi_0441 0.89 -1.5 481,494 - Echvi_0441 0.89 +0.1 481,497 - Echvi_0441 0.89 +1.1 481,664 + +1.5 481,665 - +0.2 481,706 + -0.1 481,794 + -2.1 481,800 - +1.6 481,869 + Echvi_0442 0.10 -1.0 481,869 + Echvi_0442 0.10 -1.8 481,870 - Echvi_0442 0.10 +0.1 481,894 - Echvi_0442 0.11 +1.3 481,911 - Echvi_0442 0.12 -2.4 481,911 - Echvi_0442 0.12 -1.3 481,939 - Echvi_0442 0.14 +0.8 481,947 + Echvi_0442 0.14 -0.9 481,947 + Echvi_0442 0.14 -2.2 481,947 + Echvi_0442 0.14 -0.7 481,947 + Echvi_0442 0.14 +1.6 481,947 + Echvi_0442 0.14 +3.1 481,951 + Echvi_0442 0.14 -1.4 481,961 - Echvi_0442 0.15 -3.3 481,991 - Echvi_0442 0.17 -2.0 481,991 - Echvi_0442 0.17 -2.3 482,025 - Echvi_0442 0.19 +1.5 482,047 - Echvi_0442 0.20 -0.0 482,136 + Echvi_0442 0.25 +0.5 482,139 + Echvi_0442 0.25 -1.4 482,218 - Echvi_0442 0.29 -1.8 482,225 + Echvi_0442 0.30 -2.0 482,238 - Echvi_0442 0.30 -0.1 482,241 + Echvi_0442 0.30 +1.1 482,241 + Echvi_0442 0.30 +1.5 482,259 - Echvi_0442 0.31 -0.9 482,303 + Echvi_0442 0.34 -0.2 482,303 + Echvi_0442 0.34 +3.9 482,306 + Echvi_0442 0.34 -1.5 482,323 - Echvi_0442 0.35 +2.1 482,328 + Echvi_0442 0.35 -2.1 482,328 + Echvi_0442 0.35 +2.5 482,328 + Echvi_0442 0.35 -2.4 482,328 + Echvi_0442 0.35 -0.1 482,329 - Echvi_0442 0.35 -2.7 482,376 - Echvi_0442 0.38 -1.2 482,397 + Echvi_0442 0.39 +0.5 482,475 + Echvi_0442 0.43 -1.7 482,475 + Echvi_0442 0.43 +3.6 482,522 - Echvi_0442 0.46 +1.7 482,556 + Echvi_0442 0.48 -0.4 482,557 - Echvi_0442 0.48 +2.8 482,581 - Echvi_0442 0.49 +0.3 482,581 - Echvi_0442 0.49 -2.0 482,585 + Echvi_0442 0.49 -0.6 482,585 + Echvi_0442 0.49 +1.1 482,586 - Echvi_0442 0.49 +1.8 482,628 - Echvi_0442 0.52 -0.1 482,655 - Echvi_0442 0.53 +0.1
Or see this region's nucleotide sequence