Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0437 and Echvi_0438 are separated by 33 nucleotides Echvi_0438 and Echvi_0439 overlap by 61 nucleotides Echvi_0439 and Echvi_0440 are separated by 212 nucleotides Echvi_0440 and Echvi_0441 are separated by 785 nucleotides
Echvi_0437: Echvi_0437 - DNA primase (bacterial type), at 477,193 to 478,056
_0437
Echvi_0438: Echvi_0438 - hypothetical protein, at 478,090 to 478,263
_0438
Echvi_0439: Echvi_0439 - hypothetical protein, at 478,203 to 478,484
_0439
Echvi_0440: Echvi_0440 - DNA repair proteins, at 478,697 to 479,167
_0440
Echvi_0441: Echvi_0441 - Predicted ATP-dependent endonuclease of the OLD family, at 479,953 to 481,680
_0441
Position (kb) 478
479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 477.727 kb on - strand, within Echvi_0437 at 477.727 kb on - strand, within Echvi_0437 at 477.806 kb on + strand, within Echvi_0437 at 477.806 kb on + strand, within Echvi_0437 at 477.876 kb on - strand, within Echvi_0437 at 477.901 kb on + strand, within Echvi_0437 at 477.901 kb on + strand, within Echvi_0437 at 478.059 kb on + strand at 478.060 kb on - strand at 478.095 kb on + strand at 478.096 kb on - strand at 478.099 kb on - strand at 478.132 kb on - strand, within Echvi_0438 at 478.163 kb on + strand, within Echvi_0438 at 478.164 kb on - strand, within Echvi_0438 at 478.172 kb on + strand, within Echvi_0438 at 478.172 kb on + strand, within Echvi_0438 at 478.523 kb on + strand at 478.523 kb on + strand at 478.573 kb on + strand at 478.648 kb on + strand at 478.648 kb on + strand at 478.720 kb on - strand at 478.751 kb on - strand, within Echvi_0440 at 478.784 kb on + strand, within Echvi_0440 at 478.784 kb on + strand, within Echvi_0440 at 479.447 kb on - strand at 479.475 kb on + strand at 479.475 kb on + strand at 479.475 kb on + strand at 479.509 kb on + strand at 479.509 kb on + strand at 479.515 kb on + strand at 479.515 kb on + strand at 479.575 kb on + strand at 479.576 kb on - strand at 479.587 kb on + strand at 479.588 kb on - strand at 479.599 kb on - strand at 479.622 kb on + strand at 479.624 kb on + strand at 479.625 kb on - strand at 479.647 kb on - strand at 479.655 kb on + strand at 479.691 kb on + strand at 479.703 kb on + strand at 479.719 kb on + strand at 479.735 kb on - strand at 479.735 kb on - strand at 479.736 kb on + strand at 479.736 kb on + strand at 479.737 kb on - strand at 479.742 kb on + strand at 479.743 kb on - strand at 479.816 kb on + strand at 479.817 kb on - strand at 479.936 kb on + strand at 479.936 kb on + strand at 479.937 kb on - strand at 479.937 kb on - strand at 479.937 kb on - strand at 479.938 kb on + strand at 479.938 kb on + strand at 479.938 kb on + strand at 479.938 kb on + strand at 479.938 kb on + strand at 479.939 kb on - strand at 479.939 kb on - strand at 479.939 kb on - strand at 480.026 kb on + strand at 480.026 kb on + strand at 480.026 kb on + strand at 480.026 kb on + strand at 480.026 kb on + strand at 480.027 kb on - strand at 480.030 kb on - strand at 480.035 kb on + strand at 480.035 kb on + strand at 480.042 kb on + strand at 480.045 kb on + strand at 480.046 kb on - strand at 480.046 kb on - strand at 480.046 kb on - strand at 480.049 kb on - strand at 480.065 kb on + strand at 480.065 kb on + strand at 480.089 kb on + strand at 480.099 kb on + strand at 480.100 kb on - strand at 480.100 kb on - strand at 480.140 kb on - strand, within Echvi_0441 at 480.150 kb on - strand, within Echvi_0441 at 480.151 kb on + strand, within Echvi_0441 at 480.156 kb on + strand, within Echvi_0441 at 480.157 kb on - strand, within Echvi_0441
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 477,727 - Echvi_0437 0.62 -1.2 477,727 - Echvi_0437 0.62 -0.9 477,806 + Echvi_0437 0.71 -1.2 477,806 + Echvi_0437 0.71 +1.0 477,876 - Echvi_0437 0.79 +1.1 477,901 + Echvi_0437 0.82 +1.2 477,901 + Echvi_0437 0.82 +0.9 478,059 + -0.5 478,060 - -1.7 478,095 + +0.3 478,096 - -0.3 478,099 - -0.1 478,132 - Echvi_0438 0.24 +0.3 478,163 + Echvi_0438 0.42 +2.5 478,164 - Echvi_0438 0.43 -1.3 478,172 + Echvi_0438 0.47 +2.3 478,172 + Echvi_0438 0.47 -0.8 478,523 + -0.5 478,523 + +0.3 478,573 + +0.1 478,648 + +0.2 478,648 + -2.4 478,720 - +2.0 478,751 - Echvi_0440 0.11 +0.5 478,784 + Echvi_0440 0.18 +0.8 478,784 + Echvi_0440 0.18 +2.7 479,447 - -0.5 479,475 + +1.2 479,475 + -2.6 479,475 + -0.4 479,509 + -2.0 479,509 + +0.1 479,515 + -0.4 479,515 + -2.5 479,575 + -1.0 479,576 - +1.3 479,587 + +1.5 479,588 - -2.4 479,599 - -0.7 479,622 + -3.0 479,624 + -2.0 479,625 - +1.3 479,647 - +0.1 479,655 + -0.3 479,691 + -0.6 479,703 + -1.1 479,719 + -1.2 479,735 - +0.1 479,735 - +1.9 479,736 + +2.5 479,736 + -1.5 479,737 - -1.5 479,742 + -0.2 479,743 - -0.4 479,816 + -1.9 479,817 - -0.1 479,936 + -0.7 479,936 + +0.1 479,937 - +0.1 479,937 - +0.9 479,937 - -1.5 479,938 + -2.7 479,938 + -3.1 479,938 + +0.6 479,938 + -0.8 479,938 + -1.2 479,939 - -0.0 479,939 - +0.5 479,939 - +2.6 480,026 + -1.9 480,026 + +0.0 480,026 + -1.7 480,026 + +1.7 480,026 + -0.3 480,027 - +0.2 480,030 - -0.7 480,035 + -0.2 480,035 + -1.1 480,042 + +1.8 480,045 + +1.1 480,046 - +1.2 480,046 - -1.4 480,046 - +2.0 480,049 - +0.1 480,065 + -1.1 480,065 + -0.8 480,089 + -2.9 480,099 + +0.5 480,100 - -0.7 480,100 - -0.4 480,140 - Echvi_0441 0.11 -0.2 480,150 - Echvi_0441 0.11 +1.5 480,151 + Echvi_0441 0.11 -1.3 480,156 + Echvi_0441 0.12 +0.2 480,157 - Echvi_0441 0.12 -1.7
Or see this region's nucleotide sequence