Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0415

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0413 and Echvi_0414 are separated by 94 nucleotidesEchvi_0414 and Echvi_0415 are separated by 14 nucleotidesEchvi_0415 and Echvi_0416 are separated by 337 nucleotides Echvi_0413: Echvi_0413 - Fic/DOC family., at 452,885 to 453,868 _0413 Echvi_0414: Echvi_0414 - hypothetical protein, at 453,963 to 454,847 _0414 Echvi_0415: Echvi_0415 - Site-specific recombinase XerD, at 454,862 to 456,175 _0415 Echvi_0416: Echvi_0416 - Transposase and inactivated derivatives, at 456,513 to 457,412 _0416 Position (kb) 454 455 456 457Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 454.115 kb on - strand, within Echvi_0414at 454.367 kb on + strand, within Echvi_0414at 454.393 kb on + strand, within Echvi_0414at 454.395 kb on + strand, within Echvi_0414at 454.548 kb on + strand, within Echvi_0414at 454.548 kb on + strand, within Echvi_0414at 454.554 kb on + strand, within Echvi_0414at 454.554 kb on + strand, within Echvi_0414at 454.554 kb on + strand, within Echvi_0414at 454.554 kb on + strand, within Echvi_0414at 454.555 kb on - strand, within Echvi_0414at 454.555 kb on - strand, within Echvi_0414at 454.555 kb on - strand, within Echvi_0414at 454.555 kb on - strand, within Echvi_0414at 454.555 kb on - strand, within Echvi_0414at 454.591 kb on - strand, within Echvi_0414at 455.119 kb on + strand, within Echvi_0415at 455.119 kb on + strand, within Echvi_0415at 455.119 kb on + strand, within Echvi_0415at 455.123 kb on + strand, within Echvi_0415at 455.123 kb on + strand, within Echvi_0415at 455.123 kb on + strand, within Echvi_0415at 455.124 kb on - strand, within Echvi_0415at 455.124 kb on - strand, within Echvi_0415at 455.132 kb on + strand, within Echvi_0415at 455.132 kb on + strand, within Echvi_0415at 455.133 kb on - strand, within Echvi_0415at 455.133 kb on - strand, within Echvi_0415at 455.136 kb on + strand, within Echvi_0415at 455.137 kb on - strand, within Echvi_0415at 455.137 kb on - strand, within Echvi_0415at 455.137 kb on - strand, within Echvi_0415at 455.141 kb on - strand, within Echvi_0415at 455.141 kb on - strand, within Echvi_0415at 455.160 kb on - strand, within Echvi_0415at 455.190 kb on + strand, within Echvi_0415at 455.191 kb on - strand, within Echvi_0415at 455.195 kb on - strand, within Echvi_0415at 455.214 kb on + strand, within Echvi_0415at 455.232 kb on - strand, within Echvi_0415at 455.254 kb on + strand, within Echvi_0415at 455.284 kb on + strand, within Echvi_0415at 455.285 kb on - strand, within Echvi_0415at 455.350 kb on + strand, within Echvi_0415at 455.351 kb on - strand, within Echvi_0415at 455.374 kb on + strand, within Echvi_0415at 455.374 kb on + strand, within Echvi_0415at 455.375 kb on - strand, within Echvi_0415at 455.375 kb on - strand, within Echvi_0415at 455.396 kb on - strand, within Echvi_0415at 455.398 kb on - strand, within Echvi_0415at 455.433 kb on - strand, within Echvi_0415at 455.481 kb on - strand, within Echvi_0415at 455.481 kb on - strand, within Echvi_0415at 455.481 kb on - strand, within Echvi_0415at 455.505 kb on + strand, within Echvi_0415at 455.506 kb on - strand, within Echvi_0415at 455.506 kb on - strand, within Echvi_0415at 455.522 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.532 kb on - strand, within Echvi_0415at 455.532 kb on - strand, within Echvi_0415at 455.532 kb on - strand, within Echvi_0415at 455.539 kb on + strand, within Echvi_0415at 455.582 kb on - strand, within Echvi_0415at 455.604 kb on - strand, within Echvi_0415at 455.638 kb on - strand, within Echvi_0415at 455.710 kb on + strand, within Echvi_0415at 455.710 kb on + strand, within Echvi_0415at 455.711 kb on - strand, within Echvi_0415at 455.749 kb on + strand, within Echvi_0415at 455.759 kb on - strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.761 kb on - strand, within Echvi_0415at 455.761 kb on - strand, within Echvi_0415at 455.761 kb on - strand, within Echvi_0415at 455.761 kb on - strand, within Echvi_0415at 455.779 kb on - strand, within Echvi_0415at 455.832 kb on + strand, within Echvi_0415at 455.832 kb on + strand, within Echvi_0415at 455.832 kb on + strand, within Echvi_0415at 455.833 kb on - strand, within Echvi_0415at 455.833 kb on - strand, within Echvi_0415at 455.833 kb on - strand, within Echvi_0415at 455.837 kb on - strand, within Echvi_0415at 455.837 kb on - strand, within Echvi_0415at 455.837 kb on - strand, within Echvi_0415at 455.843 kb on + strand, within Echvi_0415at 455.859 kb on + strand, within Echvi_0415at 455.860 kb on - strand, within Echvi_0415at 455.911 kb on + strand, within Echvi_0415at 455.934 kb on + strand, within Echvi_0415at 455.945 kb on + strand, within Echvi_0415at 456.054 kb on - strandat 456.054 kb on - strandat 456.059 kb on + strandat 456.061 kb on + strandat 456.062 kb on - strandat 456.067 kb on + strandat 456.068 kb on - strandat 456.068 kb on - strandat 456.068 kb on - strandat 456.071 kb on + strandat 456.072 kb on - strandat 456.101 kb on + strandat 456.102 kb on - strandat 456.161 kb on + strandat 456.182 kb on + strandat 456.193 kb on - strandat 456.337 kb on - strandat 456.472 kb on - strandat 456.475 kb on - strandat 456.493 kb on - strandat 456.539 kb on - strandat 456.581 kb on + strandat 456.582 kb on - strandat 456.603 kb on - strand, within Echvi_0416at 456.643 kb on + strandat 456.699 kb on - strand, within Echvi_0416at 456.701 kb on + strand, within Echvi_0416at 456.702 kb on - strand, within Echvi_0416at 456.727 kb on + strand, within Echvi_0416at 456.728 kb on - strand, within Echvi_0416at 456.774 kb on - strand, within Echvi_0416at 456.774 kb on - strand, within Echvi_0416at 456.778 kb on + strand, within Echvi_0416at 456.779 kb on - strand, within Echvi_0416at 456.779 kb on - strand, within Echvi_0416at 456.779 kb on - strand, within Echvi_0416at 456.779 kb on - strand, within Echvi_0416at 456.779 kb on - strand, within Echvi_0416at 456.783 kb on - strand, within Echvi_0416at 456.809 kb on - strand, within Echvi_0416at 456.902 kb on - strand, within Echvi_0416

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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454,115 - Echvi_0414 0.17 -1.0
454,367 + Echvi_0414 0.46 -2.5
454,393 + Echvi_0414 0.49 -3.5
454,395 + Echvi_0414 0.49 +1.4
454,548 + Echvi_0414 0.66 -0.4
454,548 + Echvi_0414 0.66 -0.7
454,554 + Echvi_0414 0.67 +1.2
454,554 + Echvi_0414 0.67 -1.7
454,554 + Echvi_0414 0.67 +1.3
454,554 + Echvi_0414 0.67 +1.9
454,555 - Echvi_0414 0.67 +0.9
454,555 - Echvi_0414 0.67 +0.6
454,555 - Echvi_0414 0.67 -1.3
454,555 - Echvi_0414 0.67 +0.3
454,555 - Echvi_0414 0.67 -2.1
454,591 - Echvi_0414 0.71 +1.1
455,119 + Echvi_0415 0.20 -0.5
455,119 + Echvi_0415 0.20 +0.0
455,119 + Echvi_0415 0.20 +2.6
455,123 + Echvi_0415 0.20 +1.6
455,123 + Echvi_0415 0.20 -1.5
455,123 + Echvi_0415 0.20 +1.4
455,124 - Echvi_0415 0.20 +0.9
455,124 - Echvi_0415 0.20 +1.2
455,132 + Echvi_0415 0.21 -2.6
455,132 + Echvi_0415 0.21 +0.7
455,133 - Echvi_0415 0.21 -1.7
455,133 - Echvi_0415 0.21 +0.9
455,136 + Echvi_0415 0.21 -2.7
455,137 - Echvi_0415 0.21 +1.1
455,137 - Echvi_0415 0.21 +0.9
455,137 - Echvi_0415 0.21 -0.6
455,141 - Echvi_0415 0.21 +2.2
455,141 - Echvi_0415 0.21 +1.5
455,160 - Echvi_0415 0.23 -0.9
455,190 + Echvi_0415 0.25 +2.8
455,191 - Echvi_0415 0.25 +1.5
455,195 - Echvi_0415 0.25 +4.2
455,214 + Echvi_0415 0.27 +0.2
455,232 - Echvi_0415 0.28 -0.2
455,254 + Echvi_0415 0.30 -1.1
455,284 + Echvi_0415 0.32 +2.4
455,285 - Echvi_0415 0.32 -0.4
455,350 + Echvi_0415 0.37 -0.7
455,351 - Echvi_0415 0.37 +2.0
455,374 + Echvi_0415 0.39 -1.7
455,374 + Echvi_0415 0.39 -0.2
455,375 - Echvi_0415 0.39 -0.7
455,375 - Echvi_0415 0.39 +0.3
455,396 - Echvi_0415 0.41 +1.3
455,398 - Echvi_0415 0.41 +2.4
455,433 - Echvi_0415 0.43 -0.2
455,481 - Echvi_0415 0.47 +0.7
455,481 - Echvi_0415 0.47 -2.4
455,481 - Echvi_0415 0.47 +1.0
455,505 + Echvi_0415 0.49 -2.1
455,506 - Echvi_0415 0.49 -0.1
455,506 - Echvi_0415 0.49 -1.7
455,522 + Echvi_0415 0.50 +1.1
455,531 + Echvi_0415 0.51 +1.4
455,531 + Echvi_0415 0.51 +0.7
455,531 + Echvi_0415 0.51 +1.1
455,531 + Echvi_0415 0.51 +0.8
455,531 + Echvi_0415 0.51 -2.2
455,531 + Echvi_0415 0.51 -1.4
455,531 + Echvi_0415 0.51 +2.1
455,532 - Echvi_0415 0.51 +0.1
455,532 - Echvi_0415 0.51 +0.1
455,532 - Echvi_0415 0.51 -1.8
455,539 + Echvi_0415 0.52 +1.5
455,582 - Echvi_0415 0.55 +1.4
455,604 - Echvi_0415 0.56 -0.9
455,638 - Echvi_0415 0.59 +2.7
455,710 + Echvi_0415 0.65 +2.0
455,710 + Echvi_0415 0.65 +0.6
455,711 - Echvi_0415 0.65 +1.9
455,749 + Echvi_0415 0.68 +0.4
455,759 - Echvi_0415 0.68 +0.9
455,760 + Echvi_0415 0.68 +2.3
455,760 + Echvi_0415 0.68 +1.1
455,760 + Echvi_0415 0.68 -1.5
455,760 + Echvi_0415 0.68 +3.6
455,760 + Echvi_0415 0.68 -1.6
455,760 + Echvi_0415 0.68 +1.6
455,761 - Echvi_0415 0.68 +3.3
455,761 - Echvi_0415 0.68 +1.7
455,761 - Echvi_0415 0.68 -2.5
455,761 - Echvi_0415 0.68 +1.7
455,779 - Echvi_0415 0.70 +1.0
455,832 + Echvi_0415 0.74 -0.3
455,832 + Echvi_0415 0.74 -2.8
455,832 + Echvi_0415 0.74 +0.3
455,833 - Echvi_0415 0.74 -1.3
455,833 - Echvi_0415 0.74 +1.2
455,833 - Echvi_0415 0.74 -0.6
455,837 - Echvi_0415 0.74 +0.5
455,837 - Echvi_0415 0.74 +2.4
455,837 - Echvi_0415 0.74 +1.0
455,843 + Echvi_0415 0.75 +0.1
455,859 + Echvi_0415 0.76 +2.8
455,860 - Echvi_0415 0.76 +0.2
455,911 + Echvi_0415 0.80 -0.6
455,934 + Echvi_0415 0.82 -0.7
455,945 + Echvi_0415 0.82 +0.5
456,054 - +0.1
456,054 - +1.6
456,059 + +1.4
456,061 + +1.5
456,062 - +0.0
456,067 + -0.3
456,068 - +1.4
456,068 - -0.8
456,068 - -0.4
456,071 + +2.1
456,072 - -2.1
456,101 + -2.4
456,102 - +0.2
456,161 + -0.3
456,182 + -1.2
456,193 - -0.0
456,337 - +2.1
456,472 - -1.4
456,475 - +0.7
456,493 - -2.0
456,539 - -1.3
456,581 + -1.0
456,582 - -0.3
456,603 - Echvi_0416 0.10 -0.2
456,643 + +0.4
456,699 - Echvi_0416 0.21 +0.4
456,701 + Echvi_0416 0.21 +0.0
456,702 - Echvi_0416 0.21 +0.9
456,727 + Echvi_0416 0.24 -1.5
456,728 - Echvi_0416 0.24 -0.3
456,774 - Echvi_0416 0.29 -1.8
456,774 - Echvi_0416 0.29 -1.2
456,778 + Echvi_0416 0.29 -2.2
456,779 - Echvi_0416 0.30 -2.1
456,779 - Echvi_0416 0.30 -0.9
456,779 - Echvi_0416 0.30 +0.1
456,779 - Echvi_0416 0.30 +1.6
456,779 - Echvi_0416 0.30 +1.0
456,783 - Echvi_0416 0.30 -0.7
456,809 - Echvi_0416 0.33 +0.2
456,902 - Echvi_0416 0.43 -0.6

Or see this region's nucleotide sequence