Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0342 and Echvi_0343 are separated by 1 nucleotides Echvi_0343 and Echvi_0344 are separated by 65 nucleotides
Echvi_0342: Echvi_0342 - ATP-dependent DNA helicase, RecQ family, at 363,196 to 365,118
_0342
Echvi_0343: Echvi_0343 - Enoyl-CoA hydratase/carnithine racemase, at 365,120 to 365,896
_0343
Echvi_0344: Echvi_0344 - ComEC/Rec2-related protein, at 365,962 to 367,920
_0344
Position (kb) 365
366 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 365.121 kb on + strand at 365.121 kb on + strand at 365.122 kb on - strand at 365.211 kb on + strand, within Echvi_0343 at 365.211 kb on + strand, within Echvi_0343 at 365.211 kb on + strand, within Echvi_0343 at 365.299 kb on + strand, within Echvi_0343 at 365.369 kb on + strand, within Echvi_0343 at 365.370 kb on - strand, within Echvi_0343 at 365.611 kb on + strand, within Echvi_0343 at 365.612 kb on - strand, within Echvi_0343 at 365.612 kb on - strand, within Echvi_0343 at 365.612 kb on - strand, within Echvi_0343 at 365.613 kb on + strand, within Echvi_0343 at 365.613 kb on + strand, within Echvi_0343 at 365.614 kb on - strand, within Echvi_0343 at 365.614 kb on - strand, within Echvi_0343 at 365.614 kb on - strand, within Echvi_0343 at 365.672 kb on - strand, within Echvi_0343 at 365.854 kb on - strand at 365.913 kb on + strand at 365.914 kb on - strand at 365.914 kb on - strand at 365.923 kb on + strand at 365.980 kb on + strand at 366.048 kb on - strand at 366.066 kb on + strand at 366.126 kb on - strand at 366.181 kb on - strand, within Echvi_0344 at 366.213 kb on - strand, within Echvi_0344 at 366.213 kb on - strand, within Echvi_0344 at 366.272 kb on + strand, within Echvi_0344 at 366.272 kb on + strand, within Echvi_0344 at 366.273 kb on - strand, within Echvi_0344 at 366.273 kb on - strand, within Echvi_0344 at 366.300 kb on + strand, within Echvi_0344 at 366.300 kb on + strand, within Echvi_0344 at 366.301 kb on - strand, within Echvi_0344 at 366.302 kb on + strand, within Echvi_0344 at 366.302 kb on + strand, within Echvi_0344 at 366.302 kb on + strand, within Echvi_0344 at 366.303 kb on - strand, within Echvi_0344 at 366.303 kb on - strand, within Echvi_0344 at 366.309 kb on - strand, within Echvi_0344 at 366.310 kb on + strand, within Echvi_0344 at 366.310 kb on + strand, within Echvi_0344 at 366.311 kb on - strand, within Echvi_0344 at 366.311 kb on - strand, within Echvi_0344 at 366.311 kb on - strand, within Echvi_0344 at 366.311 kb on - strand, within Echvi_0344 at 366.389 kb on + strand, within Echvi_0344 at 366.395 kb on + strand, within Echvi_0344 at 366.396 kb on - strand, within Echvi_0344 at 366.396 kb on - strand, within Echvi_0344 at 366.396 kb on - strand, within Echvi_0344 at 366.425 kb on + strand, within Echvi_0344 at 366.476 kb on + strand, within Echvi_0344 at 366.541 kb on + strand, within Echvi_0344 at 366.693 kb on - strand, within Echvi_0344 at 366.695 kb on + strand, within Echvi_0344 at 366.696 kb on - strand, within Echvi_0344 at 366.761 kb on + strand, within Echvi_0344 at 366.761 kb on + strand, within Echvi_0344 at 366.762 kb on - strand, within Echvi_0344 at 366.762 kb on - strand, within Echvi_0344 at 366.762 kb on - strand, within Echvi_0344 at 366.771 kb on + strand, within Echvi_0344 at 366.772 kb on - strand, within Echvi_0344 at 366.836 kb on + strand, within Echvi_0344 at 366.864 kb on + strand, within Echvi_0344 at 366.865 kb on - strand, within Echvi_0344 at 366.869 kb on + strand, within Echvi_0344 at 366.869 kb on + strand, within Echvi_0344 at 366.869 kb on + strand, within Echvi_0344 at 366.870 kb on - strand, within Echvi_0344
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 365,121 + +2.7 365,121 + -0.8 365,122 - -0.6 365,211 + Echvi_0343 0.12 +2.7 365,211 + Echvi_0343 0.12 +2.2 365,211 + Echvi_0343 0.12 -0.9 365,299 + Echvi_0343 0.23 +1.0 365,369 + Echvi_0343 0.32 -1.5 365,370 - Echvi_0343 0.32 -0.2 365,611 + Echvi_0343 0.63 -3.1 365,612 - Echvi_0343 0.63 -1.8 365,612 - Echvi_0343 0.63 +2.5 365,612 - Echvi_0343 0.63 +1.0 365,613 + Echvi_0343 0.63 +1.5 365,613 + Echvi_0343 0.63 +1.5 365,614 - Echvi_0343 0.64 +1.4 365,614 - Echvi_0343 0.64 -1.2 365,614 - Echvi_0343 0.64 -1.6 365,672 - Echvi_0343 0.71 +0.2 365,854 - +2.2 365,913 + -1.9 365,914 - -1.1 365,914 - +0.7 365,923 + +0.8 365,980 + -0.6 366,048 - -2.5 366,066 + +0.1 366,126 - -2.2 366,181 - Echvi_0344 0.11 +0.1 366,213 - Echvi_0344 0.13 -0.6 366,213 - Echvi_0344 0.13 +1.2 366,272 + Echvi_0344 0.16 +2.7 366,272 + Echvi_0344 0.16 +1.9 366,273 - Echvi_0344 0.16 -0.8 366,273 - Echvi_0344 0.16 +0.8 366,300 + Echvi_0344 0.17 +0.8 366,300 + Echvi_0344 0.17 +0.3 366,301 - Echvi_0344 0.17 -0.8 366,302 + Echvi_0344 0.17 -2.3 366,302 + Echvi_0344 0.17 -0.4 366,302 + Echvi_0344 0.17 +0.8 366,303 - Echvi_0344 0.17 -1.2 366,303 - Echvi_0344 0.17 -0.9 366,309 - Echvi_0344 0.18 -0.4 366,310 + Echvi_0344 0.18 -1.4 366,310 + Echvi_0344 0.18 +3.2 366,311 - Echvi_0344 0.18 -1.7 366,311 - Echvi_0344 0.18 -0.4 366,311 - Echvi_0344 0.18 +0.8 366,311 - Echvi_0344 0.18 +0.9 366,389 + Echvi_0344 0.22 +0.3 366,395 + Echvi_0344 0.22 +0.1 366,396 - Echvi_0344 0.22 -1.7 366,396 - Echvi_0344 0.22 -2.5 366,396 - Echvi_0344 0.22 -1.4 366,425 + Echvi_0344 0.24 +0.2 366,476 + Echvi_0344 0.26 +0.8 366,541 + Echvi_0344 0.30 +1.2 366,693 - Echvi_0344 0.37 -2.4 366,695 + Echvi_0344 0.37 +0.5 366,696 - Echvi_0344 0.37 -0.5 366,761 + Echvi_0344 0.41 +1.0 366,761 + Echvi_0344 0.41 -1.6 366,762 - Echvi_0344 0.41 +1.3 366,762 - Echvi_0344 0.41 -2.5 366,762 - Echvi_0344 0.41 +0.6 366,771 + Echvi_0344 0.41 +0.2 366,772 - Echvi_0344 0.41 -3.0 366,836 + Echvi_0344 0.45 +1.0 366,864 + Echvi_0344 0.46 -1.7 366,865 - Echvi_0344 0.46 -0.9 366,869 + Echvi_0344 0.46 +1.0 366,869 + Echvi_0344 0.46 -0.7 366,869 + Echvi_0344 0.46 -0.6 366,870 - Echvi_0344 0.46 -0.9
Or see this region's nucleotide sequence