Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0338 and Echvi_0339 overlap by 1 nucleotides Echvi_0339 and Echvi_0340 are separated by 192 nucleotides Echvi_0340 and Echvi_0341 are separated by 7 nucleotides Echvi_0341 and Echvi_0342 overlap by 4 nucleotides
Echvi_0338: Echvi_0338 - Sua5/YciO/YrdC/YwlC family protein, at 360,209 to 361,171
_0338
Echvi_0339: Echvi_0339 - Tetratricopeptide repeat., at 361,171 to 361,866
_0339
Echvi_0340: Echvi_0340 - ADP-ribose pyrophosphatase, at 362,059 to 362,610
_0340
Echvi_0341: Echvi_0341 - hypothetical protein, at 362,618 to 363,199
_0341
Echvi_0342: Echvi_0342 - ATP-dependent DNA helicase, RecQ family, at 363,196 to 365,118
_0342
Position (kb) 362
363 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 361.249 kb on - strand, within Echvi_0339 at 361.518 kb on - strand, within Echvi_0339 at 361.522 kb on - strand, within Echvi_0339 at 361.522 kb on - strand, within Echvi_0339 at 361.558 kb on - strand, within Echvi_0339 at 361.560 kb on - strand, within Echvi_0339 at 361.560 kb on - strand, within Echvi_0339 at 361.560 kb on - strand, within Echvi_0339 at 361.599 kb on - strand, within Echvi_0339 at 361.599 kb on - strand, within Echvi_0339 at 361.629 kb on - strand, within Echvi_0339 at 361.636 kb on - strand, within Echvi_0339 at 361.660 kb on - strand, within Echvi_0339 at 361.732 kb on - strand, within Echvi_0339 at 361.767 kb on - strand, within Echvi_0339 at 361.771 kb on - strand, within Echvi_0339 at 361.783 kb on - strand, within Echvi_0339 at 361.944 kb on + strand at 361.944 kb on + strand at 361.944 kb on + strand at 361.944 kb on + strand at 361.945 kb on - strand at 361.945 kb on - strand at 362.051 kb on - strand at 362.052 kb on - strand at 362.144 kb on + strand, within Echvi_0340 at 362.150 kb on - strand, within Echvi_0340 at 362.221 kb on + strand, within Echvi_0340 at 362.221 kb on + strand, within Echvi_0340 at 362.222 kb on - strand, within Echvi_0340 at 362.222 kb on - strand, within Echvi_0340 at 362.307 kb on + strand, within Echvi_0340 at 362.396 kb on - strand, within Echvi_0340 at 362.605 kb on - strand at 362.611 kb on - strand at 362.620 kb on - strand at 362.634 kb on - strand at 362.642 kb on + strand at 362.642 kb on + strand at 362.643 kb on - strand at 362.643 kb on - strand at 362.644 kb on + strand at 362.645 kb on - strand at 362.673 kb on + strand at 362.673 kb on + strand at 362.674 kb on - strand at 362.674 kb on - strand at 362.674 kb on - strand at 362.804 kb on + strand, within Echvi_0341 at 362.882 kb on + strand, within Echvi_0341 at 362.883 kb on - strand, within Echvi_0341 at 363.036 kb on + strand, within Echvi_0341 at 363.037 kb on - strand, within Echvi_0341 at 363.037 kb on - strand, within Echvi_0341 at 363.045 kb on + strand, within Echvi_0341 at 363.123 kb on - strand, within Echvi_0341 at 363.136 kb on + strand, within Echvi_0341 at 363.136 kb on + strand, within Echvi_0341 at 363.137 kb on - strand, within Echvi_0341 at 363.282 kb on - strand at 363.330 kb on + strand at 363.434 kb on - strand, within Echvi_0342 at 363.502 kb on - strand, within Echvi_0342
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 361,249 - Echvi_0339 0.11 -0.1 361,518 - Echvi_0339 0.50 -0.2 361,522 - Echvi_0339 0.50 -2.2 361,522 - Echvi_0339 0.50 +1.3 361,558 - Echvi_0339 0.56 -0.8 361,560 - Echvi_0339 0.56 +0.3 361,560 - Echvi_0339 0.56 -1.4 361,560 - Echvi_0339 0.56 -1.6 361,599 - Echvi_0339 0.61 -0.3 361,599 - Echvi_0339 0.61 -0.4 361,629 - Echvi_0339 0.66 -1.0 361,636 - Echvi_0339 0.67 -1.6 361,660 - Echvi_0339 0.70 +0.3 361,732 - Echvi_0339 0.81 +1.0 361,767 - Echvi_0339 0.86 -1.1 361,771 - Echvi_0339 0.86 -2.2 361,783 - Echvi_0339 0.88 +0.1 361,944 + -2.5 361,944 + -0.6 361,944 + -0.6 361,944 + -1.8 361,945 - -0.4 361,945 - -2.4 362,051 - -3.4 362,052 - -1.5 362,144 + Echvi_0340 0.15 -2.4 362,150 - Echvi_0340 0.16 -0.5 362,221 + Echvi_0340 0.29 -0.6 362,221 + Echvi_0340 0.29 +0.2 362,222 - Echvi_0340 0.30 -0.1 362,222 - Echvi_0340 0.30 -1.5 362,307 + Echvi_0340 0.45 -2.2 362,396 - Echvi_0340 0.61 -2.6 362,605 - +1.3 362,611 - -2.6 362,620 - -1.3 362,634 - -0.7 362,642 + +1.0 362,642 + +0.2 362,643 - -0.8 362,643 - +0.1 362,644 + -1.7 362,645 - +0.9 362,673 + +1.2 362,673 + -2.1 362,674 - -0.9 362,674 - -0.6 362,674 - -0.8 362,804 + Echvi_0341 0.32 +0.9 362,882 + Echvi_0341 0.45 +1.9 362,883 - Echvi_0341 0.46 -1.1 363,036 + Echvi_0341 0.72 +0.1 363,037 - Echvi_0341 0.72 -2.4 363,037 - Echvi_0341 0.72 -0.4 363,045 + Echvi_0341 0.73 +0.1 363,123 - Echvi_0341 0.87 -2.2 363,136 + Echvi_0341 0.89 -1.5 363,136 + Echvi_0341 0.89 -1.1 363,137 - Echvi_0341 0.89 +1.4 363,282 - +2.0 363,330 + -2.0 363,434 - Echvi_0342 0.12 -1.9 363,502 - Echvi_0342 0.16 -1.9
Or see this region's nucleotide sequence