Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0213 and Echvi_0214 are separated by 540 nucleotides Echvi_0214 and Echvi_0215 overlap by 17 nucleotides Echvi_0215 and Echvi_0216 overlap by 4 nucleotides
Echvi_0213: Echvi_0213 - hypothetical protein, at 233,060 to 233,374
_0213
Echvi_0214: Echvi_0214 - Putative transcription activator, at 233,915 to 234,568
_0214
Echvi_0215: Echvi_0215 - phosphomethylpyrimidine kinase, at 234,552 to 235,391
_0215
Echvi_0216: Echvi_0216 - thiamine-phosphate pyrophosphorylase, at 235,388 to 236,026
_0216
Position (kb) 233
234
235 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 232.918 kb on + strand at 232.919 kb on - strand at 232.919 kb on - strand at 233.050 kb on + strand at 233.050 kb on + strand at 233.050 kb on + strand at 233.050 kb on + strand at 233.076 kb on + strand at 233.079 kb on + strand at 233.080 kb on - strand at 233.102 kb on + strand, within Echvi_0213 at 233.103 kb on - strand, within Echvi_0213 at 233.103 kb on - strand, within Echvi_0213 at 233.106 kb on + strand, within Echvi_0213 at 233.106 kb on + strand, within Echvi_0213 at 233.119 kb on + strand, within Echvi_0213 at 233.136 kb on + strand, within Echvi_0213 at 233.136 kb on + strand, within Echvi_0213 at 233.136 kb on + strand, within Echvi_0213 at 233.137 kb on - strand, within Echvi_0213 at 233.155 kb on - strand, within Echvi_0213 at 233.178 kb on + strand, within Echvi_0213 at 233.263 kb on + strand, within Echvi_0213 at 233.373 kb on - strand at 233.582 kb on - strand at 233.643 kb on + strand at 233.643 kb on + strand at 233.653 kb on - strand at 233.716 kb on + strand at 233.734 kb on - strand at 233.818 kb on + strand at 233.843 kb on + strand at 234.091 kb on - strand, within Echvi_0214 at 234.091 kb on - strand, within Echvi_0214 at 234.094 kb on + strand, within Echvi_0214 at 234.094 kb on + strand, within Echvi_0214 at 234.095 kb on - strand, within Echvi_0214 at 234.095 kb on - strand, within Echvi_0214 at 234.095 kb on - strand, within Echvi_0214 at 234.141 kb on + strand, within Echvi_0214 at 234.142 kb on - strand, within Echvi_0214 at 234.142 kb on - strand, within Echvi_0214 at 234.145 kb on + strand, within Echvi_0214 at 234.146 kb on - strand, within Echvi_0214 at 234.163 kb on + strand, within Echvi_0214 at 234.163 kb on + strand, within Echvi_0214 at 234.207 kb on - strand, within Echvi_0214 at 234.207 kb on - strand, within Echvi_0214 at 234.237 kb on + strand, within Echvi_0214 at 234.237 kb on + strand, within Echvi_0214 at 234.237 kb on + strand, within Echvi_0214 at 234.237 kb on + strand, within Echvi_0214 at 234.237 kb on + strand, within Echvi_0214 at 234.238 kb on - strand, within Echvi_0214 at 234.238 kb on - strand, within Echvi_0214 at 234.238 kb on - strand, within Echvi_0214 at 234.330 kb on - strand, within Echvi_0214 at 234.457 kb on + strand, within Echvi_0214 at 234.593 kb on - strand at 234.593 kb on - strand at 234.883 kb on - strand, within Echvi_0215 at 234.883 kb on - strand, within Echvi_0215 at 235.143 kb on + strand, within Echvi_0215 at 235.224 kb on - strand, within Echvi_0215 at 235.224 kb on - strand, within Echvi_0215 at 235.230 kb on + strand, within Echvi_0215 at 235.241 kb on + strand, within Echvi_0215 at 235.253 kb on + strand, within Echvi_0215 at 235.253 kb on + strand, within Echvi_0215 at 235.254 kb on - strand, within Echvi_0215 at 235.369 kb on + strand at 235.369 kb on + strand at 235.369 kb on + strand at 235.382 kb on + strand at 235.522 kb on + strand, within Echvi_0216 at 235.523 kb on - strand, within Echvi_0216
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 232,918 + +2.8 232,919 - -2.1 232,919 - -0.7 233,050 + +0.2 233,050 + -3.0 233,050 + -1.8 233,050 + +0.7 233,076 + -2.1 233,079 + -1.3 233,080 - -1.1 233,102 + Echvi_0213 0.13 -0.5 233,103 - Echvi_0213 0.14 +2.4 233,103 - Echvi_0213 0.14 -1.2 233,106 + Echvi_0213 0.15 -3.0 233,106 + Echvi_0213 0.15 +0.3 233,119 + Echvi_0213 0.19 +2.0 233,136 + Echvi_0213 0.24 -1.4 233,136 + Echvi_0213 0.24 -1.3 233,136 + Echvi_0213 0.24 -1.0 233,137 - Echvi_0213 0.24 +2.6 233,155 - Echvi_0213 0.30 +0.2 233,178 + Echvi_0213 0.37 +1.5 233,263 + Echvi_0213 0.64 -0.1 233,373 - -0.8 233,582 - +0.8 233,643 + -0.1 233,643 + +1.9 233,653 - -2.3 233,716 + +1.7 233,734 - +1.0 233,818 + +1.2 233,843 + -2.0 234,091 - Echvi_0214 0.27 +0.1 234,091 - Echvi_0214 0.27 -2.0 234,094 + Echvi_0214 0.27 -1.3 234,094 + Echvi_0214 0.27 +2.9 234,095 - Echvi_0214 0.28 +0.2 234,095 - Echvi_0214 0.28 +1.5 234,095 - Echvi_0214 0.28 -1.1 234,141 + Echvi_0214 0.35 -0.5 234,142 - Echvi_0214 0.35 -1.4 234,142 - Echvi_0214 0.35 -3.2 234,145 + Echvi_0214 0.35 +1.2 234,146 - Echvi_0214 0.35 +0.3 234,163 + Echvi_0214 0.38 +2.3 234,163 + Echvi_0214 0.38 -2.4 234,207 - Echvi_0214 0.45 -1.5 234,207 - Echvi_0214 0.45 -0.3 234,237 + Echvi_0214 0.49 +2.6 234,237 + Echvi_0214 0.49 -0.8 234,237 + Echvi_0214 0.49 +2.4 234,237 + Echvi_0214 0.49 -2.2 234,237 + Echvi_0214 0.49 +0.3 234,238 - Echvi_0214 0.49 +0.0 234,238 - Echvi_0214 0.49 -2.1 234,238 - Echvi_0214 0.49 +4.7 234,330 - Echvi_0214 0.63 -2.0 234,457 + Echvi_0214 0.83 +3.3 234,593 - -3.2 234,593 - +0.5 234,883 - Echvi_0215 0.39 -1.5 234,883 - Echvi_0215 0.39 +1.2 235,143 + Echvi_0215 0.70 +1.1 235,224 - Echvi_0215 0.80 -0.8 235,224 - Echvi_0215 0.80 -1.0 235,230 + Echvi_0215 0.81 +2.2 235,241 + Echvi_0215 0.82 +1.3 235,253 + Echvi_0215 0.83 -2.1 235,253 + Echvi_0215 0.83 -1.3 235,254 - Echvi_0215 0.84 -1.6 235,369 + +1.3 235,369 + -2.6 235,369 + -0.8 235,382 + +0.3 235,522 + Echvi_0216 0.21 -1.1 235,523 - Echvi_0216 0.21 -1.0
Or see this region's nucleotide sequence