Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0207 and Echvi_0208 are separated by 153 nucleotides Echvi_0208 and Echvi_0209 are separated by 14 nucleotides
Echvi_0207: Echvi_0207 - Transposase DDE domain., at 226,700 to 227,596
_0207
Echvi_0208: Echvi_0208 - hypothetical protein, at 227,750 to 228,499
_0208
Echvi_0209: Echvi_0209 - hypothetical protein, at 228,514 to 229,602
_0209
Position (kb) 227
228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 227.873 kb on + strand, within Echvi_0208 at 227.874 kb on - strand, within Echvi_0208 at 227.885 kb on + strand, within Echvi_0208 at 228.006 kb on - strand, within Echvi_0208 at 228.054 kb on + strand, within Echvi_0208 at 228.055 kb on - strand, within Echvi_0208 at 228.128 kb on - strand, within Echvi_0208 at 228.128 kb on - strand, within Echvi_0208 at 228.164 kb on + strand, within Echvi_0208 at 228.164 kb on + strand, within Echvi_0208 at 228.165 kb on - strand, within Echvi_0208 at 228.264 kb on + strand, within Echvi_0208 at 228.264 kb on + strand, within Echvi_0208 at 228.265 kb on - strand, within Echvi_0208 at 228.265 kb on - strand, within Echvi_0208 at 228.338 kb on + strand, within Echvi_0208 at 228.361 kb on + strand, within Echvi_0208 at 228.522 kb on - strand at 228.543 kb on + strand at 228.543 kb on + strand at 228.544 kb on - strand at 228.544 kb on - strand at 228.545 kb on + strand at 228.545 kb on + strand at 228.545 kb on + strand at 228.546 kb on - strand at 228.546 kb on - strand at 228.546 kb on - strand at 228.613 kb on + strand at 228.613 kb on + strand at 228.613 kb on + strand at 228.614 kb on - strand at 228.614 kb on - strand at 228.618 kb on + strand at 228.632 kb on + strand, within Echvi_0209 at 228.644 kb on + strand, within Echvi_0209 at 228.651 kb on - strand, within Echvi_0209 at 228.651 kb on - strand, within Echvi_0209 at 228.657 kb on + strand, within Echvi_0209 at 228.657 kb on + strand, within Echvi_0209 at 228.669 kb on - strand, within Echvi_0209 at 228.729 kb on + strand, within Echvi_0209 at 228.730 kb on - strand, within Echvi_0209 at 228.736 kb on - strand, within Echvi_0209 at 228.760 kb on + strand, within Echvi_0209 at 228.767 kb on + strand, within Echvi_0209 at 228.814 kb on - strand, within Echvi_0209 at 229.021 kb on + strand, within Echvi_0209 at 229.039 kb on + strand, within Echvi_0209 at 229.120 kb on + strand, within Echvi_0209 at 229.120 kb on + strand, within Echvi_0209 at 229.121 kb on - strand, within Echvi_0209 at 229.130 kb on + strand, within Echvi_0209 at 229.130 kb on + strand, within Echvi_0209 at 229.130 kb on + strand, within Echvi_0209 at 229.130 kb on + strand, within Echvi_0209 at 229.170 kb on - strand, within Echvi_0209 at 229.186 kb on + strand, within Echvi_0209 at 229.206 kb on + strand, within Echvi_0209 at 229.207 kb on - strand, within Echvi_0209 at 229.242 kb on + strand, within Echvi_0209 at 229.243 kb on - strand, within Echvi_0209 at 229.318 kb on - strand, within Echvi_0209 at 229.336 kb on - strand, within Echvi_0209 at 229.346 kb on - strand, within Echvi_0209 at 229.375 kb on + strand, within Echvi_0209 at 229.376 kb on - strand, within Echvi_0209 at 229.408 kb on - strand, within Echvi_0209 at 229.443 kb on + strand, within Echvi_0209 at 229.443 kb on + strand, within Echvi_0209
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 227,873 + Echvi_0208 0.16 -0.3 227,874 - Echvi_0208 0.17 -1.8 227,885 + Echvi_0208 0.18 +1.1 228,006 - Echvi_0208 0.34 +0.0 228,054 + Echvi_0208 0.41 +0.8 228,055 - Echvi_0208 0.41 +1.3 228,128 - Echvi_0208 0.50 -0.7 228,128 - Echvi_0208 0.50 +0.3 228,164 + Echvi_0208 0.55 -2.3 228,164 + Echvi_0208 0.55 -2.2 228,165 - Echvi_0208 0.55 -2.1 228,264 + Echvi_0208 0.69 -0.7 228,264 + Echvi_0208 0.69 -2.2 228,265 - Echvi_0208 0.69 -0.9 228,265 - Echvi_0208 0.69 -2.0 228,338 + Echvi_0208 0.78 -2.1 228,361 + Echvi_0208 0.81 +3.3 228,522 - +3.3 228,543 + -1.8 228,543 + +2.6 228,544 - +1.6 228,544 - -3.6 228,545 + -0.3 228,545 + +5.1 228,545 + -0.2 228,546 - -0.5 228,546 - +0.5 228,546 - -1.4 228,613 + -0.5 228,613 + -0.7 228,613 + +1.7 228,614 - +0.0 228,614 - -1.1 228,618 + -0.3 228,632 + Echvi_0209 0.11 +0.3 228,644 + Echvi_0209 0.12 -0.8 228,651 - Echvi_0209 0.13 -0.7 228,651 - Echvi_0209 0.13 -1.0 228,657 + Echvi_0209 0.13 +1.8 228,657 + Echvi_0209 0.13 -0.2 228,669 - Echvi_0209 0.14 -0.3 228,729 + Echvi_0209 0.20 +1.2 228,730 - Echvi_0209 0.20 +0.5 228,736 - Echvi_0209 0.20 -1.4 228,760 + Echvi_0209 0.23 +0.9 228,767 + Echvi_0209 0.23 -0.5 228,814 - Echvi_0209 0.28 -1.5 229,021 + Echvi_0209 0.47 -0.9 229,039 + Echvi_0209 0.48 +0.9 229,120 + Echvi_0209 0.56 -0.5 229,120 + Echvi_0209 0.56 -1.9 229,121 - Echvi_0209 0.56 -0.5 229,130 + Echvi_0209 0.57 -2.3 229,130 + Echvi_0209 0.57 +2.0 229,130 + Echvi_0209 0.57 +0.0 229,130 + Echvi_0209 0.57 +0.2 229,170 - Echvi_0209 0.60 -1.5 229,186 + Echvi_0209 0.62 +0.3 229,206 + Echvi_0209 0.64 -0.5 229,207 - Echvi_0209 0.64 +1.1 229,242 + Echvi_0209 0.67 +1.6 229,243 - Echvi_0209 0.67 -1.9 229,318 - Echvi_0209 0.74 +1.4 229,336 - Echvi_0209 0.75 -0.8 229,346 - Echvi_0209 0.76 +1.3 229,375 + Echvi_0209 0.79 -2.9 229,376 - Echvi_0209 0.79 -2.1 229,408 - Echvi_0209 0.82 -0.2 229,443 + Echvi_0209 0.85 -1.6 229,443 + Echvi_0209 0.85 -0.4
Or see this region's nucleotide sequence