Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0203 and Echvi_0204 are separated by 150 nucleotides Echvi_0204 and Echvi_0205 are separated by 9 nucleotides Echvi_0205 and Echvi_0206 are separated by 73 nucleotides
Echvi_0203: Echvi_0203 - Transcriptional regulator, at 221,191 to 222,069
_0203
Echvi_0204: Echvi_0204 - N-acetyl-beta-hexosaminidase, at 222,220 to 224,154
_0204
Echvi_0205: Echvi_0205 - Metal-dependent hydrolase, at 224,164 to 224,958
_0205
Echvi_0206: Echvi_0206 - Transcriptional regulators of sugar metabolism, at 225,032 to 225,793
_0206
Position (kb) 222
223
224
225 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 221.268 kb on + strand at 221.268 kb on + strand at 221.354 kb on + strand, within Echvi_0203 at 221.354 kb on + strand, within Echvi_0203 at 221.354 kb on + strand, within Echvi_0203 at 221.354 kb on + strand, within Echvi_0203 at 221.444 kb on + strand, within Echvi_0203 at 221.444 kb on + strand, within Echvi_0203 at 221.444 kb on + strand, within Echvi_0203 at 221.500 kb on - strand, within Echvi_0203 at 221.557 kb on + strand, within Echvi_0203 at 221.557 kb on + strand, within Echvi_0203 at 221.557 kb on + strand, within Echvi_0203 at 221.557 kb on + strand, within Echvi_0203 at 221.558 kb on - strand, within Echvi_0203 at 221.558 kb on - strand, within Echvi_0203 at 221.588 kb on + strand, within Echvi_0203 at 221.693 kb on + strand, within Echvi_0203 at 221.693 kb on + strand, within Echvi_0203 at 221.693 kb on + strand, within Echvi_0203 at 221.694 kb on - strand, within Echvi_0203 at 221.793 kb on - strand, within Echvi_0203 at 221.797 kb on + strand, within Echvi_0203 at 221.915 kb on + strand, within Echvi_0203 at 222.370 kb on + strand at 222.370 kb on + strand at 222.370 kb on + strand at 222.372 kb on + strand at 222.373 kb on - strand at 222.373 kb on - strand at 222.378 kb on - strand at 222.414 kb on - strand, within Echvi_0204 at 222.414 kb on - strand, within Echvi_0204 at 222.467 kb on + strand, within Echvi_0204 at 222.533 kb on - strand, within Echvi_0204 at 222.533 kb on - strand, within Echvi_0204 at 222.558 kb on + strand, within Echvi_0204 at 222.588 kb on - strand, within Echvi_0204 at 222.611 kb on + strand, within Echvi_0204 at 222.611 kb on + strand, within Echvi_0204 at 222.611 kb on + strand, within Echvi_0204 at 222.630 kb on - strand, within Echvi_0204 at 222.685 kb on + strand, within Echvi_0204 at 222.686 kb on - strand, within Echvi_0204 at 222.687 kb on + strand, within Echvi_0204 at 222.707 kb on + strand, within Echvi_0204 at 222.707 kb on + strand, within Echvi_0204 at 222.708 kb on - strand, within Echvi_0204 at 222.769 kb on - strand, within Echvi_0204 at 222.843 kb on + strand, within Echvi_0204 at 222.851 kb on + strand, within Echvi_0204 at 222.871 kb on - strand, within Echvi_0204 at 222.895 kb on + strand, within Echvi_0204 at 222.934 kb on + strand, within Echvi_0204 at 222.937 kb on + strand, within Echvi_0204 at 222.937 kb on + strand, within Echvi_0204 at 222.938 kb on - strand, within Echvi_0204 at 223.188 kb on - strand, within Echvi_0204 at 223.188 kb on - strand, within Echvi_0204 at 223.188 kb on - strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.200 kb on - strand, within Echvi_0204 at 223.200 kb on - strand, within Echvi_0204 at 223.200 kb on - strand, within Echvi_0204 at 223.200 kb on - strand, within Echvi_0204 at 223.200 kb on - strand, within Echvi_0204 at 223.200 kb on - strand, within Echvi_0204 at 223.200 kb on - strand, within Echvi_0204 at 223.200 kb on - strand, within Echvi_0204 at 223.201 kb on + strand, within Echvi_0204 at 223.201 kb on + strand, within Echvi_0204 at 223.201 kb on + strand, within Echvi_0204 at 223.202 kb on - strand, within Echvi_0204 at 223.202 kb on - strand, within Echvi_0204 at 223.379 kb on + strand, within Echvi_0204 at 223.388 kb on - strand, within Echvi_0204 at 223.396 kb on - strand, within Echvi_0204 at 223.398 kb on + strand, within Echvi_0204 at 223.399 kb on - strand, within Echvi_0204 at 223.403 kb on + strand, within Echvi_0204 at 223.570 kb on + strand, within Echvi_0204 at 223.570 kb on + strand, within Echvi_0204 at 223.571 kb on - strand, within Echvi_0204 at 223.571 kb on - strand, within Echvi_0204 at 223.571 kb on - strand, within Echvi_0204 at 223.648 kb on + strand, within Echvi_0204 at 223.710 kb on - strand, within Echvi_0204 at 223.732 kb on + strand, within Echvi_0204 at 223.732 kb on + strand, within Echvi_0204 at 223.732 kb on + strand, within Echvi_0204 at 223.733 kb on - strand, within Echvi_0204 at 223.733 kb on - strand, within Echvi_0204 at 223.759 kb on + strand, within Echvi_0204 at 223.760 kb on - strand, within Echvi_0204 at 223.760 kb on - strand, within Echvi_0204 at 223.980 kb on + strand at 223.986 kb on - strand at 224.032 kb on + strand at 224.087 kb on + strand at 224.088 kb on - strand at 224.088 kb on - strand at 224.092 kb on + strand at 224.092 kb on + strand at 224.093 kb on - strand at 224.093 kb on - strand at 224.094 kb on + strand at 224.095 kb on - strand at 224.144 kb on + strand at 224.148 kb on + strand at 224.152 kb on + strand at 224.153 kb on - strand at 224.153 kb on - strand at 224.175 kb on - strand at 224.182 kb on - strand at 224.186 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.196 kb on - strand at 224.258 kb on - strand, within Echvi_0205 at 224.306 kb on + strand, within Echvi_0205 at 224.306 kb on + strand, within Echvi_0205 at 224.307 kb on - strand, within Echvi_0205 at 224.307 kb on - strand, within Echvi_0205 at 224.377 kb on - strand, within Echvi_0205 at 224.584 kb on + strand, within Echvi_0205 at 224.585 kb on - strand, within Echvi_0205 at 224.585 kb on - strand, within Echvi_0205 at 224.585 kb on - strand, within Echvi_0205 at 224.586 kb on + strand, within Echvi_0205 at 224.587 kb on - strand, within Echvi_0205 at 224.683 kb on + strand, within Echvi_0205 at 224.709 kb on - strand, within Echvi_0205 at 224.727 kb on + strand, within Echvi_0205 at 224.777 kb on + strand, within Echvi_0205 at 224.777 kb on + strand, within Echvi_0205 at 224.777 kb on + strand, within Echvi_0205 at 224.777 kb on + strand, within Echvi_0205 at 224.777 kb on + strand, within Echvi_0205 at 224.777 kb on + strand, within Echvi_0205 at 224.778 kb on - strand, within Echvi_0205 at 224.778 kb on - strand, within Echvi_0205 at 224.778 kb on - strand, within Echvi_0205 at 224.778 kb on - strand, within Echvi_0205 at 224.805 kb on + strand, within Echvi_0205 at 224.806 kb on - strand, within Echvi_0205 at 224.835 kb on + strand, within Echvi_0205 at 224.851 kb on - strand, within Echvi_0205 at 224.943 kb on - strand at 224.996 kb on + strand at 224.996 kb on + strand at 225.041 kb on + strand at 225.041 kb on + strand at 225.041 kb on + strand at 225.041 kb on + strand at 225.041 kb on + strand at 225.042 kb on - strand at 225.042 kb on - strand at 225.042 kb on - strand at 225.106 kb on + strand at 225.139 kb on + strand, within Echvi_0206 at 225.153 kb on - strand, within Echvi_0206
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 221,268 + -1.0 221,268 + -1.5 221,354 + Echvi_0203 0.19 +0.0 221,354 + Echvi_0203 0.19 +2.0 221,354 + Echvi_0203 0.19 +0.6 221,354 + Echvi_0203 0.19 +0.7 221,444 + Echvi_0203 0.29 -2.2 221,444 + Echvi_0203 0.29 -1.3 221,444 + Echvi_0203 0.29 -0.3 221,500 - Echvi_0203 0.35 -0.8 221,557 + Echvi_0203 0.42 -0.0 221,557 + Echvi_0203 0.42 -2.9 221,557 + Echvi_0203 0.42 +1.2 221,557 + Echvi_0203 0.42 +0.1 221,558 - Echvi_0203 0.42 +1.2 221,558 - Echvi_0203 0.42 -0.9 221,588 + Echvi_0203 0.45 +1.3 221,693 + Echvi_0203 0.57 -1.7 221,693 + Echvi_0203 0.57 +1.3 221,693 + Echvi_0203 0.57 -0.8 221,694 - Echvi_0203 0.57 +0.8 221,793 - Echvi_0203 0.68 -2.3 221,797 + Echvi_0203 0.69 -1.7 221,915 + Echvi_0203 0.82 -0.4 222,370 + +0.7 222,370 + +0.3 222,370 + -1.9 222,372 + -0.3 222,373 - -2.4 222,373 - +0.1 222,378 - -3.0 222,414 - Echvi_0204 0.10 -2.7 222,414 - Echvi_0204 0.10 +0.7 222,467 + Echvi_0204 0.13 -0.8 222,533 - Echvi_0204 0.16 +2.7 222,533 - Echvi_0204 0.16 -0.5 222,558 + Echvi_0204 0.17 +2.1 222,588 - Echvi_0204 0.19 +0.4 222,611 + Echvi_0204 0.20 -1.0 222,611 + Echvi_0204 0.20 -1.5 222,611 + Echvi_0204 0.20 +2.5 222,630 - Echvi_0204 0.21 +2.7 222,685 + Echvi_0204 0.24 +0.6 222,686 - Echvi_0204 0.24 -1.1 222,687 + Echvi_0204 0.24 +1.7 222,707 + Echvi_0204 0.25 +0.3 222,707 + Echvi_0204 0.25 -0.8 222,708 - Echvi_0204 0.25 -1.8 222,769 - Echvi_0204 0.28 -4.0 222,843 + Echvi_0204 0.32 -1.4 222,851 + Echvi_0204 0.33 +1.3 222,871 - Echvi_0204 0.34 -0.4 222,895 + Echvi_0204 0.35 +0.4 222,934 + Echvi_0204 0.37 -2.0 222,937 + Echvi_0204 0.37 +1.7 222,937 + Echvi_0204 0.37 +0.1 222,938 - Echvi_0204 0.37 -0.3 223,188 - Echvi_0204 0.50 +0.3 223,188 - Echvi_0204 0.50 -0.5 223,188 - Echvi_0204 0.50 -0.6 223,199 + Echvi_0204 0.51 +0.5 223,199 + Echvi_0204 0.51 -3.9 223,199 + Echvi_0204 0.51 -0.7 223,199 + Echvi_0204 0.51 +0.7 223,199 + Echvi_0204 0.51 -2.9 223,199 + Echvi_0204 0.51 +0.0 223,199 + Echvi_0204 0.51 -2.2 223,199 + Echvi_0204 0.51 -3.5 223,199 + Echvi_0204 0.51 -1.3 223,199 + Echvi_0204 0.51 -0.6 223,199 + Echvi_0204 0.51 -0.2 223,200 - Echvi_0204 0.51 -1.0 223,200 - Echvi_0204 0.51 -3.2 223,200 - Echvi_0204 0.51 +0.1 223,200 - Echvi_0204 0.51 -2.0 223,200 - Echvi_0204 0.51 +0.7 223,200 - Echvi_0204 0.51 +1.1 223,200 - Echvi_0204 0.51 -2.3 223,200 - Echvi_0204 0.51 +0.6 223,201 + Echvi_0204 0.51 -3.0 223,201 + Echvi_0204 0.51 -1.4 223,201 + Echvi_0204 0.51 -0.3 223,202 - Echvi_0204 0.51 -0.8 223,202 - Echvi_0204 0.51 -0.7 223,379 + Echvi_0204 0.60 -1.6 223,388 - Echvi_0204 0.60 -0.3 223,396 - Echvi_0204 0.61 -2.6 223,398 + Echvi_0204 0.61 -4.1 223,399 - Echvi_0204 0.61 +1.3 223,403 + Echvi_0204 0.61 -0.3 223,570 + Echvi_0204 0.70 +0.7 223,570 + Echvi_0204 0.70 -0.3 223,571 - Echvi_0204 0.70 -1.7 223,571 - Echvi_0204 0.70 +0.6 223,571 - Echvi_0204 0.70 -0.5 223,648 + Echvi_0204 0.74 -1.0 223,710 - Echvi_0204 0.77 -0.3 223,732 + Echvi_0204 0.78 +0.3 223,732 + Echvi_0204 0.78 +2.0 223,732 + Echvi_0204 0.78 -0.3 223,733 - Echvi_0204 0.78 +0.3 223,733 - Echvi_0204 0.78 -1.3 223,759 + Echvi_0204 0.80 -0.9 223,760 - Echvi_0204 0.80 -0.1 223,760 - Echvi_0204 0.80 -2.1 223,980 + +1.7 223,986 - -1.7 224,032 + +3.8 224,087 + +2.1 224,088 - +0.7 224,088 - -1.6 224,092 + -1.1 224,092 + -1.5 224,093 - -2.1 224,093 - +0.0 224,094 + -2.4 224,095 - +0.4 224,144 + +4.4 224,148 + -2.3 224,152 + +0.7 224,153 - -0.8 224,153 - -1.3 224,175 - +4.1 224,182 - -2.8 224,186 + -2.7 224,189 + -3.1 224,189 + -3.0 224,189 + +2.3 224,189 + -0.7 224,190 - -3.4 224,190 - +0.1 224,196 - -2.1 224,258 - Echvi_0205 0.12 +2.6 224,306 + Echvi_0205 0.18 +1.1 224,306 + Echvi_0205 0.18 +2.2 224,307 - Echvi_0205 0.18 -1.8 224,307 - Echvi_0205 0.18 -0.9 224,377 - Echvi_0205 0.27 -2.5 224,584 + Echvi_0205 0.53 +3.2 224,585 - Echvi_0205 0.53 +0.9 224,585 - Echvi_0205 0.53 -2.5 224,585 - Echvi_0205 0.53 -1.3 224,586 + Echvi_0205 0.53 -0.9 224,587 - Echvi_0205 0.53 -0.6 224,683 + Echvi_0205 0.65 -2.7 224,709 - Echvi_0205 0.69 -2.7 224,727 + Echvi_0205 0.71 -2.0 224,777 + Echvi_0205 0.77 +2.0 224,777 + Echvi_0205 0.77 -1.3 224,777 + Echvi_0205 0.77 -0.4 224,777 + Echvi_0205 0.77 +1.5 224,777 + Echvi_0205 0.77 +0.0 224,777 + Echvi_0205 0.77 +0.4 224,778 - Echvi_0205 0.77 -1.9 224,778 - Echvi_0205 0.77 -1.8 224,778 - Echvi_0205 0.77 +0.3 224,778 - Echvi_0205 0.77 +0.5 224,805 + Echvi_0205 0.81 +1.7 224,806 - Echvi_0205 0.81 -1.4 224,835 + Echvi_0205 0.84 -1.5 224,851 - Echvi_0205 0.86 +1.7 224,943 - +2.0 224,996 + +0.6 224,996 + -0.5 225,041 + -2.0 225,041 + -2.4 225,041 + -1.8 225,041 + -1.1 225,041 + -0.7 225,042 - -3.1 225,042 - -2.3 225,042 - +0.2 225,106 + -2.5 225,139 + Echvi_0206 0.14 -0.5 225,153 - Echvi_0206 0.16 +0.0
Or see this region's nucleotide sequence