Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0058

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0057 and Echvi_0058 are separated by 53 nucleotidesEchvi_0058 and Echvi_0059 overlap by 4 nucleotides Echvi_0057: Echvi_0057 - FOG: LysM repeat, at 53,531 to 55,102 _0057 Echvi_0058: Echvi_0058 - Protein of unknown function (DUF3078)., at 55,156 to 56,148 _0058 Echvi_0059: Echvi_0059 - DNA polymerase III, subunit gamma and tau, at 56,145 to 57,865 _0059 Position (kb) 55 56 57Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 54.274 kb on - strand, within Echvi_0057at 54.327 kb on - strand, within Echvi_0057at 54.327 kb on - strand, within Echvi_0057at 54.338 kb on + strand, within Echvi_0057at 54.388 kb on + strand, within Echvi_0057at 54.388 kb on + strand, within Echvi_0057at 54.403 kb on - strand, within Echvi_0057at 54.556 kb on + strand, within Echvi_0057at 54.556 kb on + strand, within Echvi_0057at 54.597 kb on + strand, within Echvi_0057at 54.630 kb on - strand, within Echvi_0057at 54.632 kb on + strand, within Echvi_0057at 54.632 kb on + strand, within Echvi_0057at 54.632 kb on + strand, within Echvi_0057at 54.632 kb on + strand, within Echvi_0057at 54.633 kb on - strand, within Echvi_0057at 54.633 kb on - strand, within Echvi_0057at 54.633 kb on - strand, within Echvi_0057at 54.636 kb on - strand, within Echvi_0057at 54.671 kb on + strand, within Echvi_0057at 54.719 kb on + strand, within Echvi_0057at 54.720 kb on - strand, within Echvi_0057at 54.760 kb on - strand, within Echvi_0057at 54.761 kb on + strand, within Echvi_0057at 54.762 kb on - strand, within Echvi_0057at 54.809 kb on + strand, within Echvi_0057at 54.810 kb on - strand, within Echvi_0057at 54.810 kb on - strand, within Echvi_0057at 54.814 kb on + strand, within Echvi_0057at 54.814 kb on + strand, within Echvi_0057at 54.846 kb on + strand, within Echvi_0057at 54.846 kb on + strand, within Echvi_0057at 54.846 kb on + strand, within Echvi_0057at 54.865 kb on + strand, within Echvi_0057at 54.964 kb on + strandat 54.964 kb on + strandat 54.964 kb on + strandat 54.964 kb on + strandat 54.965 kb on - strandat 54.965 kb on - strandat 54.965 kb on - strandat 54.989 kb on + strandat 55.084 kb on - strandat 55.084 kb on - strandat 55.118 kb on + strandat 55.119 kb on - strandat 55.119 kb on - strandat 55.123 kb on + strandat 55.123 kb on + strandat 55.136 kb on + strandat 55.136 kb on + strandat 55.136 kb on + strandat 55.170 kb on + strandat 55.170 kb on + strandat 55.187 kb on + strandat 55.257 kb on + strand, within Echvi_0058at 55.269 kb on + strand, within Echvi_0058at 55.270 kb on - strand, within Echvi_0058at 55.300 kb on - strand, within Echvi_0058at 55.313 kb on + strand, within Echvi_0058at 55.313 kb on + strand, within Echvi_0058at 55.313 kb on + strand, within Echvi_0058at 55.313 kb on + strand, within Echvi_0058at 55.313 kb on + strand, within Echvi_0058at 55.314 kb on - strand, within Echvi_0058at 55.321 kb on - strand, within Echvi_0058at 55.345 kb on + strand, within Echvi_0058at 55.368 kb on - strand, within Echvi_0058at 55.431 kb on - strand, within Echvi_0058at 55.442 kb on - strand, within Echvi_0058at 55.517 kb on - strand, within Echvi_0058at 55.517 kb on - strand, within Echvi_0058at 55.517 kb on - strand, within Echvi_0058at 55.589 kb on - strand, within Echvi_0058at 55.635 kb on + strand, within Echvi_0058at 55.636 kb on - strand, within Echvi_0058at 55.640 kb on - strand, within Echvi_0058at 55.732 kb on + strand, within Echvi_0058at 55.755 kb on + strand, within Echvi_0058at 55.767 kb on + strand, within Echvi_0058at 55.772 kb on + strand, within Echvi_0058at 55.860 kb on - strand, within Echvi_0058at 55.887 kb on + strand, within Echvi_0058at 55.887 kb on + strand, within Echvi_0058at 55.991 kb on - strand, within Echvi_0058at 56.013 kb on + strand, within Echvi_0058at 56.017 kb on + strand, within Echvi_0058at 56.017 kb on + strand, within Echvi_0058at 56.017 kb on + strand, within Echvi_0058at 56.017 kb on + strand, within Echvi_0058at 56.018 kb on - strand, within Echvi_0058at 56.018 kb on - strand, within Echvi_0058at 56.028 kb on + strand, within Echvi_0058at 56.102 kb on + strandat 56.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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54,274 - Echvi_0057 0.47 -2.1
54,327 - Echvi_0057 0.51 -0.1
54,327 - Echvi_0057 0.51 +0.2
54,338 + Echvi_0057 0.51 -3.6
54,388 + Echvi_0057 0.55 +0.7
54,388 + Echvi_0057 0.55 +0.3
54,403 - Echvi_0057 0.55 -1.8
54,556 + Echvi_0057 0.65 +1.1
54,556 + Echvi_0057 0.65 -0.5
54,597 + Echvi_0057 0.68 -1.4
54,630 - Echvi_0057 0.70 -0.8
54,632 + Echvi_0057 0.70 -1.8
54,632 + Echvi_0057 0.70 +1.7
54,632 + Echvi_0057 0.70 -1.8
54,632 + Echvi_0057 0.70 +1.8
54,633 - Echvi_0057 0.70 +3.0
54,633 - Echvi_0057 0.70 +0.5
54,633 - Echvi_0057 0.70 +2.0
54,636 - Echvi_0057 0.70 -1.0
54,671 + Echvi_0057 0.73 -3.3
54,719 + Echvi_0057 0.76 -0.1
54,720 - Echvi_0057 0.76 -0.8
54,760 - Echvi_0057 0.78 +0.8
54,761 + Echvi_0057 0.78 +0.6
54,762 - Echvi_0057 0.78 +1.0
54,809 + Echvi_0057 0.81 -1.0
54,810 - Echvi_0057 0.81 -3.0
54,810 - Echvi_0057 0.81 +0.6
54,814 + Echvi_0057 0.82 +2.0
54,814 + Echvi_0057 0.82 +1.2
54,846 + Echvi_0057 0.84 +1.9
54,846 + Echvi_0057 0.84 +3.9
54,846 + Echvi_0057 0.84 +3.2
54,865 + Echvi_0057 0.85 +1.9
54,964 + -0.5
54,964 + +0.2
54,964 + -2.1
54,964 + -0.3
54,965 - +0.3
54,965 - +1.0
54,965 - +0.6
54,989 + -2.2
55,084 - +1.8
55,084 - -1.9
55,118 + -3.6
55,119 - -0.2
55,119 - +2.8
55,123 + -2.3
55,123 + -1.9
55,136 + -2.1
55,136 + +0.7
55,136 + -0.8
55,170 + -1.7
55,170 + +2.4
55,187 + -1.3
55,257 + Echvi_0058 0.10 +1.6
55,269 + Echvi_0058 0.11 +1.0
55,270 - Echvi_0058 0.11 +0.6
55,300 - Echvi_0058 0.15 -0.5
55,313 + Echvi_0058 0.16 +5.1
55,313 + Echvi_0058 0.16 -2.2
55,313 + Echvi_0058 0.16 +0.7
55,313 + Echvi_0058 0.16 +0.1
55,313 + Echvi_0058 0.16 -0.6
55,314 - Echvi_0058 0.16 +1.3
55,321 - Echvi_0058 0.17 -1.0
55,345 + Echvi_0058 0.19 -0.1
55,368 - Echvi_0058 0.21 +0.0
55,431 - Echvi_0058 0.28 +2.7
55,442 - Echvi_0058 0.29 -0.3
55,517 - Echvi_0058 0.36 +0.4
55,517 - Echvi_0058 0.36 +2.4
55,517 - Echvi_0058 0.36 -1.6
55,589 - Echvi_0058 0.44 -0.3
55,635 + Echvi_0058 0.48 +2.7
55,636 - Echvi_0058 0.48 -0.3
55,640 - Echvi_0058 0.49 +0.4
55,732 + Echvi_0058 0.58 +3.2
55,755 + Echvi_0058 0.60 +0.7
55,767 + Echvi_0058 0.62 -2.1
55,772 + Echvi_0058 0.62 +0.3
55,860 - Echvi_0058 0.71 -1.0
55,887 + Echvi_0058 0.74 -0.8
55,887 + Echvi_0058 0.74 -2.4
55,991 - Echvi_0058 0.84 -0.5
56,013 + Echvi_0058 0.86 +2.5
56,017 + Echvi_0058 0.87 +0.7
56,017 + Echvi_0058 0.87 +3.1
56,017 + Echvi_0058 0.87 +1.7
56,017 + Echvi_0058 0.87 +2.0
56,018 - Echvi_0058 0.87 -0.5
56,018 - Echvi_0058 0.87 +2.2
56,028 + Echvi_0058 0.88 +0.7
56,102 + +0.6
56,103 - +0.8

Or see this region's nucleotide sequence