Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0055

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0054 and Echvi_0055 are separated by 132 nucleotidesEchvi_0055 and Echvi_0056 are separated by 3 nucleotidesEchvi_0056 and Echvi_0057 are separated by 86 nucleotides Echvi_0054: Echvi_0054 - Glycosyltransferases, probably involved in cell wall biogenesis, at 50,595 to 51,434 _0054 Echvi_0055: Echvi_0055 - Predicted Zn-dependent peptidases, at 51,567 to 52,796 _0055 Echvi_0056: Echvi_0056 - Predicted O-methyltransferase, at 52,800 to 53,444 _0056 Echvi_0057: Echvi_0057 - FOG: LysM repeat, at 53,531 to 55,102 _0057 Position (kb) 51 52 53Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 50.583 kb on + strandat 50.584 kb on - strandat 50.593 kb on + strandat 50.594 kb on - strandat 50.621 kb on + strandat 50.625 kb on + strandat 50.645 kb on + strandat 50.697 kb on - strand, within Echvi_0054at 50.806 kb on + strand, within Echvi_0054at 50.806 kb on + strand, within Echvi_0054at 50.807 kb on - strand, within Echvi_0054at 50.992 kb on + strand, within Echvi_0054at 50.993 kb on - strand, within Echvi_0054at 51.015 kb on + strand, within Echvi_0054at 51.016 kb on - strand, within Echvi_0054at 51.054 kb on + strand, within Echvi_0054at 51.251 kb on + strand, within Echvi_0054at 51.251 kb on + strand, within Echvi_0054at 51.309 kb on - strand, within Echvi_0054at 51.309 kb on - strand, within Echvi_0054at 51.393 kb on - strandat 51.492 kb on + strandat 51.493 kb on - strandat 51.493 kb on - strandat 51.531 kb on + strandat 51.564 kb on + strandat 51.564 kb on + strandat 51.564 kb on + strandat 51.564 kb on + strandat 51.565 kb on - strandat 51.565 kb on - strandat 51.573 kb on + strandat 51.574 kb on - strandat 51.574 kb on - strandat 51.574 kb on - strandat 51.575 kb on + strandat 51.575 kb on + strandat 51.802 kb on - strand, within Echvi_0055at 51.802 kb on - strand, within Echvi_0055at 51.806 kb on + strand, within Echvi_0055at 51.876 kb on + strand, within Echvi_0055at 51.885 kb on - strand, within Echvi_0055at 51.893 kb on + strand, within Echvi_0055at 51.894 kb on - strand, within Echvi_0055at 51.957 kb on + strand, within Echvi_0055at 52.035 kb on - strand, within Echvi_0055at 52.052 kb on + strand, within Echvi_0055at 52.053 kb on - strand, within Echvi_0055at 52.053 kb on - strand, within Echvi_0055at 52.103 kb on + strand, within Echvi_0055at 52.236 kb on + strand, within Echvi_0055at 52.237 kb on - strand, within Echvi_0055at 52.261 kb on - strand, within Echvi_0055at 52.314 kb on + strand, within Echvi_0055at 52.314 kb on + strand, within Echvi_0055at 52.314 kb on + strand, within Echvi_0055at 52.315 kb on - strand, within Echvi_0055at 52.315 kb on - strand, within Echvi_0055at 52.315 kb on - strand, within Echvi_0055at 52.331 kb on + strand, within Echvi_0055at 52.338 kb on + strand, within Echvi_0055at 52.339 kb on - strand, within Echvi_0055at 52.384 kb on + strand, within Echvi_0055at 52.407 kb on + strand, within Echvi_0055at 52.407 kb on + strand, within Echvi_0055at 52.413 kb on + strand, within Echvi_0055at 52.420 kb on - strand, within Echvi_0055at 52.427 kb on - strand, within Echvi_0055at 52.447 kb on - strand, within Echvi_0055at 52.466 kb on - strand, within Echvi_0055at 52.470 kb on - strand, within Echvi_0055at 52.472 kb on - strand, within Echvi_0055at 52.472 kb on - strand, within Echvi_0055at 52.472 kb on - strand, within Echvi_0055at 52.472 kb on - strand, within Echvi_0055at 52.472 kb on - strand, within Echvi_0055at 52.472 kb on - strand, within Echvi_0055at 52.472 kb on - strand, within Echvi_0055at 52.472 kb on - strand, within Echvi_0055at 52.575 kb on - strand, within Echvi_0055at 52.642 kb on + strand, within Echvi_0055at 52.739 kb on - strandat 52.770 kb on - strandat 52.807 kb on + strandat 52.823 kb on - strandat 52.823 kb on - strandat 52.823 kb on - strandat 52.825 kb on + strandat 52.825 kb on + strandat 52.826 kb on - strandat 52.826 kb on - strandat 52.831 kb on - strandat 52.831 kb on - strandat 52.831 kb on - strandat 52.901 kb on - strand, within Echvi_0056at 52.990 kb on + strand, within Echvi_0056at 52.998 kb on + strand, within Echvi_0056at 52.999 kb on - strand, within Echvi_0056at 53.008 kb on - strand, within Echvi_0056at 53.021 kb on + strand, within Echvi_0056at 53.057 kb on + strand, within Echvi_0056at 53.136 kb on + strand, within Echvi_0056at 53.136 kb on + strand, within Echvi_0056at 53.136 kb on + strand, within Echvi_0056at 53.136 kb on + strand, within Echvi_0056at 53.137 kb on - strand, within Echvi_0056at 53.137 kb on - strand, within Echvi_0056at 53.137 kb on - strand, within Echvi_0056at 53.137 kb on - strand, within Echvi_0056at 53.139 kb on - strand, within Echvi_0056at 53.287 kb on + strand, within Echvi_0056at 53.287 kb on + strand, within Echvi_0056at 53.287 kb on + strand, within Echvi_0056at 53.287 kb on + strand, within Echvi_0056at 53.288 kb on - strand, within Echvi_0056at 53.401 kb on + strandat 53.401 kb on + strandat 53.469 kb on - strandat 53.558 kb on + strandat 53.558 kb on + strandat 53.558 kb on + strandat 53.558 kb on + strandat 53.559 kb on - strandat 53.560 kb on + strandat 53.560 kb on + strandat 53.723 kb on + strand, within Echvi_0057at 53.723 kb on + strand, within Echvi_0057at 53.756 kb on + strand, within Echvi_0057at 53.756 kb on + strand, within Echvi_0057at 53.756 kb on + strand, within Echvi_0057at 53.757 kb on - strand, within Echvi_0057at 53.757 kb on - strand, within Echvi_0057at 53.759 kb on - strand, within Echvi_0057at 53.759 kb on - strand, within Echvi_0057

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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50,583 + -2.5
50,584 - -2.2
50,593 + +0.7
50,594 - -2.6
50,621 + -1.7
50,625 + -0.2
50,645 + +0.7
50,697 - Echvi_0054 0.12 +1.0
50,806 + Echvi_0054 0.25 +2.5
50,806 + Echvi_0054 0.25 +0.2
50,807 - Echvi_0054 0.25 +0.1
50,992 + Echvi_0054 0.47 +1.0
50,993 - Echvi_0054 0.47 -2.8
51,015 + Echvi_0054 0.50 +1.6
51,016 - Echvi_0054 0.50 -2.6
51,054 + Echvi_0054 0.55 +0.7
51,251 + Echvi_0054 0.78 -1.9
51,251 + Echvi_0054 0.78 -0.1
51,309 - Echvi_0054 0.85 +0.5
51,309 - Echvi_0054 0.85 -1.0
51,393 - -0.6
51,492 + -0.8
51,493 - +0.4
51,493 - +1.6
51,531 + -0.1
51,564 + -0.5
51,564 + +1.3
51,564 + +0.5
51,564 + -0.3
51,565 - +0.0
51,565 - +0.3
51,573 + +1.5
51,574 - +0.0
51,574 - +2.8
51,574 - -0.8
51,575 + -0.3
51,575 + -0.2
51,802 - Echvi_0055 0.19 -1.6
51,802 - Echvi_0055 0.19 -1.6
51,806 + Echvi_0055 0.19 +1.3
51,876 + Echvi_0055 0.25 +0.0
51,885 - Echvi_0055 0.26 +0.5
51,893 + Echvi_0055 0.27 -2.4
51,894 - Echvi_0055 0.27 +0.7
51,957 + Echvi_0055 0.32 -1.3
52,035 - Echvi_0055 0.38 -4.1
52,052 + Echvi_0055 0.39 -1.0
52,053 - Echvi_0055 0.40 +0.7
52,053 - Echvi_0055 0.40 -0.5
52,103 + Echvi_0055 0.44 +2.0
52,236 + Echvi_0055 0.54 -2.0
52,237 - Echvi_0055 0.54 -1.6
52,261 - Echvi_0055 0.56 +0.5
52,314 + Echvi_0055 0.61 -0.1
52,314 + Echvi_0055 0.61 +0.5
52,314 + Echvi_0055 0.61 -0.5
52,315 - Echvi_0055 0.61 +0.9
52,315 - Echvi_0055 0.61 +0.4
52,315 - Echvi_0055 0.61 +0.9
52,331 + Echvi_0055 0.62 -1.3
52,338 + Echvi_0055 0.63 +0.7
52,339 - Echvi_0055 0.63 +1.3
52,384 + Echvi_0055 0.66 -1.0
52,407 + Echvi_0055 0.68 -1.4
52,407 + Echvi_0055 0.68 -2.5
52,413 + Echvi_0055 0.69 -0.9
52,420 - Echvi_0055 0.69 -1.1
52,427 - Echvi_0055 0.70 -1.0
52,447 - Echvi_0055 0.72 -0.0
52,466 - Echvi_0055 0.73 -0.1
52,470 - Echvi_0055 0.73 -0.1
52,472 - Echvi_0055 0.74 +0.6
52,472 - Echvi_0055 0.74 +0.3
52,472 - Echvi_0055 0.74 +1.2
52,472 - Echvi_0055 0.74 -2.5
52,472 - Echvi_0055 0.74 -1.3
52,472 - Echvi_0055 0.74 -1.9
52,472 - Echvi_0055 0.74 -1.6
52,472 - Echvi_0055 0.74 -0.5
52,575 - Echvi_0055 0.82 +2.3
52,642 + Echvi_0055 0.87 -1.1
52,739 - -0.5
52,770 - -0.2
52,807 + -2.1
52,823 - -2.1
52,823 - +0.3
52,823 - -0.0
52,825 + +2.0
52,825 + -1.1
52,826 - -1.3
52,826 - -2.7
52,831 - -2.5
52,831 - -0.7
52,831 - -1.8
52,901 - Echvi_0056 0.16 -0.5
52,990 + Echvi_0056 0.29 -1.3
52,998 + Echvi_0056 0.31 +3.1
52,999 - Echvi_0056 0.31 -0.2
53,008 - Echvi_0056 0.32 -0.7
53,021 + Echvi_0056 0.34 -0.5
53,057 + Echvi_0056 0.40 -1.9
53,136 + Echvi_0056 0.52 -2.0
53,136 + Echvi_0056 0.52 +1.1
53,136 + Echvi_0056 0.52 -0.8
53,136 + Echvi_0056 0.52 +3.7
53,137 - Echvi_0056 0.52 +1.3
53,137 - Echvi_0056 0.52 -2.8
53,137 - Echvi_0056 0.52 -1.0
53,137 - Echvi_0056 0.52 -2.5
53,139 - Echvi_0056 0.53 -1.3
53,287 + Echvi_0056 0.76 -2.2
53,287 + Echvi_0056 0.76 +0.5
53,287 + Echvi_0056 0.76 -2.5
53,287 + Echvi_0056 0.76 +3.7
53,288 - Echvi_0056 0.76 +1.3
53,401 + +0.4
53,401 + -2.7
53,469 - -2.0
53,558 + -1.0
53,558 + -0.7
53,558 + -2.1
53,558 + +3.6
53,559 - +0.0
53,560 + +4.1
53,560 + +1.7
53,723 + Echvi_0057 0.12 -0.8
53,723 + Echvi_0057 0.12 -1.2
53,756 + Echvi_0057 0.14 +0.2
53,756 + Echvi_0057 0.14 +0.2
53,756 + Echvi_0057 0.14 -0.7
53,757 - Echvi_0057 0.14 +0.7
53,757 - Echvi_0057 0.14 +1.0
53,759 - Echvi_0057 0.15 +0.8
53,759 - Echvi_0057 0.15 -2.0

Or see this region's nucleotide sequence