Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1475

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1473 and PfGW456L13_1474 are separated by 213 nucleotidesPfGW456L13_1474 and PfGW456L13_1475 are separated by 357 nucleotidesPfGW456L13_1475 and PfGW456L13_1476 are separated by 261 nucleotides PfGW456L13_1473 - Conserved uncharacterized protein CreA, at 1,625,744 to 1,626,208 _1473 PfGW456L13_1474 - SSU ribosomal protein S20p, at 1,626,422 to 1,626,700 _1474 PfGW456L13_1475 - Proposed peptidoglycan lipid II flippase MurJ, at 1,627,058 to 1,628,491 _1475 PfGW456L13_1476 - Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2), at 1,628,753 to 1,629,559 _1476 Position (kb) 1627 1628 1629Strain fitness (log2 ratio) -3 -2 -1 0 1at 1626.109 kb on + strand, within PfGW456L13_1473at 1626.109 kb on + strand, within PfGW456L13_1473at 1626.109 kb on + strand, within PfGW456L13_1473at 1626.110 kb on - strand, within PfGW456L13_1473at 1626.110 kb on - strand, within PfGW456L13_1473at 1626.110 kb on - strand, within PfGW456L13_1473at 1626.119 kb on + strand, within PfGW456L13_1473at 1626.120 kb on - strand, within PfGW456L13_1473at 1626.120 kb on - strand, within PfGW456L13_1473at 1626.128 kb on + strand, within PfGW456L13_1473at 1626.151 kb on + strand, within PfGW456L13_1473at 1626.272 kb on + strandat 1626.273 kb on - strandat 1626.292 kb on + strandat 1626.292 kb on + strandat 1626.292 kb on + strandat 1626.293 kb on - strandat 1626.380 kb on - strandat 1628.507 kb on - strandat 1628.587 kb on + strandat 1628.587 kb on + strandat 1628.589 kb on + strandat 1628.589 kb on + strandat 1628.589 kb on + strandat 1628.602 kb on + strandat 1628.602 kb on + strandat 1628.602 kb on + strandat 1628.602 kb on + strandat 1628.620 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,626,109 + PfGW456L13_1473 0.78 -0.3
1,626,109 + PfGW456L13_1473 0.78 -0.4
1,626,109 + PfGW456L13_1473 0.78 +0.2
1,626,110 - PfGW456L13_1473 0.79 +0.9
1,626,110 - PfGW456L13_1473 0.79 -3.1
1,626,110 - PfGW456L13_1473 0.79 -0.5
1,626,119 + PfGW456L13_1473 0.81 -0.6
1,626,120 - PfGW456L13_1473 0.81 +0.1
1,626,120 - PfGW456L13_1473 0.81 -0.2
1,626,128 + PfGW456L13_1473 0.83 +0.1
1,626,151 + PfGW456L13_1473 0.88 +0.4
1,626,272 + -0.0
1,626,273 - -0.6
1,626,292 + -1.7
1,626,292 + -0.9
1,626,292 + -0.1
1,626,293 - -1.0
1,626,380 - -0.3
1,628,507 - -1.4
1,628,587 + -0.1
1,628,587 + -1.9
1,628,589 + -1.4
1,628,589 + -0.5
1,628,589 + -0.4
1,628,602 + -1.5
1,628,602 + -1.7
1,628,602 + -2.0
1,628,602 + -0.8
1,628,620 + -2.0

Or see this region's nucleotide sequence