Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4354

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4353 and Echvi_4354 overlap by 8 nucleotidesEchvi_4354 and Echvi_4355 are separated by 236 nucleotides Echvi_4353: Echvi_4353 - Arylsulfatase A and related enzymes, at 5,209,679 to 5,211,124 _4353 Echvi_4354: Echvi_4354 - Beta galactosidase small chain., at 5,211,117 to 5,211,674 _4354 Echvi_4355: Echvi_4355 - hypothetical protein, at 5,211,911 to 5,212,690 _4355 Position (kb) 5211 5212Strain fitness (log2 ratio) -2 -1 0 1 2at 5210.147 kb on - strand, within Echvi_4353at 5210.181 kb on - strand, within Echvi_4353at 5210.188 kb on + strand, within Echvi_4353at 5210.212 kb on - strand, within Echvi_4353at 5210.212 kb on - strand, within Echvi_4353at 5210.212 kb on - strand, within Echvi_4353at 5210.215 kb on - strand, within Echvi_4353at 5210.225 kb on - strand, within Echvi_4353at 5210.288 kb on + strand, within Echvi_4353at 5210.296 kb on + strand, within Echvi_4353at 5210.343 kb on - strand, within Echvi_4353at 5210.360 kb on - strand, within Echvi_4353at 5210.360 kb on - strand, within Echvi_4353at 5210.361 kb on + strand, within Echvi_4353at 5210.362 kb on - strand, within Echvi_4353at 5210.362 kb on - strand, within Echvi_4353at 5210.455 kb on + strand, within Echvi_4353at 5210.465 kb on - strand, within Echvi_4353at 5210.465 kb on - strand, within Echvi_4353at 5210.465 kb on - strand, within Echvi_4353at 5210.466 kb on + strand, within Echvi_4353at 5210.466 kb on + strand, within Echvi_4353at 5210.467 kb on - strand, within Echvi_4353at 5210.478 kb on + strand, within Echvi_4353at 5210.545 kb on + strand, within Echvi_4353at 5210.572 kb on + strand, within Echvi_4353at 5210.573 kb on - strand, within Echvi_4353at 5210.573 kb on - strand, within Echvi_4353at 5210.575 kb on + strand, within Echvi_4353at 5210.576 kb on - strand, within Echvi_4353at 5210.576 kb on - strand, within Echvi_4353at 5210.576 kb on - strand, within Echvi_4353at 5210.644 kb on + strand, within Echvi_4353at 5210.644 kb on + strand, within Echvi_4353at 5210.645 kb on - strand, within Echvi_4353at 5210.645 kb on - strand, within Echvi_4353at 5210.645 kb on - strand, within Echvi_4353at 5210.647 kb on - strand, within Echvi_4353at 5210.647 kb on - strand, within Echvi_4353at 5210.672 kb on + strand, within Echvi_4353at 5210.699 kb on - strand, within Echvi_4353at 5210.710 kb on - strand, within Echvi_4353at 5210.758 kb on + strand, within Echvi_4353at 5210.771 kb on - strand, within Echvi_4353at 5210.827 kb on + strand, within Echvi_4353at 5210.828 kb on - strand, within Echvi_4353at 5210.829 kb on + strand, within Echvi_4353at 5210.829 kb on + strand, within Echvi_4353at 5210.829 kb on + strand, within Echvi_4353at 5210.829 kb on + strand, within Echvi_4353at 5210.829 kb on + strand, within Echvi_4353at 5210.829 kb on + strand, within Echvi_4353at 5210.829 kb on + strand, within Echvi_4353at 5210.829 kb on + strand, within Echvi_4353at 5210.829 kb on + strand, within Echvi_4353at 5210.830 kb on - strand, within Echvi_4353at 5210.830 kb on - strand, within Echvi_4353at 5210.830 kb on - strand, within Echvi_4353at 5210.830 kb on - strand, within Echvi_4353at 5210.830 kb on - strand, within Echvi_4353at 5210.830 kb on - strand, within Echvi_4353at 5210.831 kb on + strand, within Echvi_4353at 5210.831 kb on + strand, within Echvi_4353at 5210.831 kb on + strand, within Echvi_4353at 5210.831 kb on + strand, within Echvi_4353at 5210.831 kb on + strand, within Echvi_4353at 5210.831 kb on + strand, within Echvi_4353at 5210.832 kb on - strand, within Echvi_4353at 5210.832 kb on - strand, within Echvi_4353at 5210.845 kb on + strand, within Echvi_4353at 5210.846 kb on - strand, within Echvi_4353at 5210.846 kb on - strand, within Echvi_4353at 5210.846 kb on - strand, within Echvi_4353at 5210.850 kb on + strand, within Echvi_4353at 5210.851 kb on - strand, within Echvi_4353at 5210.854 kb on + strand, within Echvi_4353at 5210.854 kb on + strand, within Echvi_4353at 5210.854 kb on + strand, within Echvi_4353at 5210.854 kb on + strand, within Echvi_4353at 5210.854 kb on + strand, within Echvi_4353at 5210.855 kb on - strand, within Echvi_4353at 5210.855 kb on - strand, within Echvi_4353at 5210.876 kb on - strand, within Echvi_4353at 5210.904 kb on + strand, within Echvi_4353at 5210.904 kb on + strand, within Echvi_4353at 5210.904 kb on + strand, within Echvi_4353at 5210.904 kb on + strand, within Echvi_4353at 5210.904 kb on + strand, within Echvi_4353at 5210.977 kb on + strand, within Echvi_4353at 5211.008 kb on + strandat 5211.008 kb on + strandat 5211.009 kb on - strandat 5211.009 kb on - strandat 5211.009 kb on - strandat 5211.009 kb on - strandat 5211.009 kb on - strandat 5211.068 kb on - strandat 5211.097 kb on + strandat 5211.103 kb on + strandat 5211.113 kb on - strandat 5211.125 kb on + strandat 5211.125 kb on + strandat 5211.125 kb on + strandat 5211.126 kb on - strandat 5211.126 kb on - strandat 5211.126 kb on - strandat 5211.131 kb on - strandat 5211.134 kb on - strandat 5211.134 kb on - strandat 5211.153 kb on + strandat 5211.153 kb on + strandat 5211.154 kb on - strandat 5211.156 kb on - strandat 5211.167 kb on + strandat 5211.167 kb on + strandat 5211.167 kb on + strandat 5211.167 kb on + strandat 5211.168 kb on - strandat 5211.169 kb on + strandat 5211.169 kb on + strandat 5211.169 kb on + strandat 5211.170 kb on - strandat 5211.229 kb on - strand, within Echvi_4354at 5211.233 kb on + strand, within Echvi_4354at 5211.241 kb on + strand, within Echvi_4354at 5211.241 kb on + strand, within Echvi_4354at 5211.241 kb on + strand, within Echvi_4354at 5211.244 kb on + strand, within Echvi_4354at 5211.244 kb on + strand, within Echvi_4354at 5211.244 kb on + strand, within Echvi_4354at 5211.245 kb on - strand, within Echvi_4354at 5211.310 kb on - strand, within Echvi_4354at 5211.326 kb on - strand, within Echvi_4354at 5211.330 kb on + strand, within Echvi_4354at 5211.330 kb on + strand, within Echvi_4354at 5211.330 kb on + strand, within Echvi_4354at 5211.331 kb on - strand, within Echvi_4354at 5211.331 kb on - strand, within Echvi_4354at 5211.331 kb on - strand, within Echvi_4354at 5211.345 kb on - strand, within Echvi_4354at 5211.345 kb on - strand, within Echvi_4354at 5211.347 kb on - strand, within Echvi_4354at 5211.347 kb on - strand, within Echvi_4354at 5211.347 kb on - strand, within Echvi_4354at 5211.347 kb on - strand, within Echvi_4354at 5211.372 kb on - strand, within Echvi_4354at 5211.378 kb on + strand, within Echvi_4354at 5211.418 kb on + strand, within Echvi_4354at 5211.419 kb on - strand, within Echvi_4354at 5211.421 kb on + strand, within Echvi_4354at 5211.421 kb on + strand, within Echvi_4354at 5211.422 kb on - strand, within Echvi_4354at 5211.462 kb on + strand, within Echvi_4354at 5211.534 kb on + strand, within Echvi_4354at 5211.534 kb on + strand, within Echvi_4354at 5211.535 kb on - strand, within Echvi_4354at 5211.538 kb on + strand, within Echvi_4354at 5211.571 kb on + strand, within Echvi_4354at 5211.597 kb on - strand, within Echvi_4354at 5211.776 kb on + strandat 5211.777 kb on - strandat 5211.809 kb on - strandat 5211.833 kb on + strandat 5211.889 kb on + strandat 5211.889 kb on + strandat 5211.892 kb on + strandat 5211.893 kb on - strandat 5211.912 kb on + strandat 5211.913 kb on - strandat 5211.913 kb on - strandat 5211.913 kb on - strandat 5211.913 kb on - strandat 5212.107 kb on + strand, within Echvi_4355at 5212.107 kb on + strand, within Echvi_4355at 5212.107 kb on + strand, within Echvi_4355at 5212.107 kb on + strand, within Echvi_4355at 5212.107 kb on + strand, within Echvi_4355at 5212.107 kb on + strand, within Echvi_4355at 5212.107 kb on + strand, within Echvi_4355at 5212.108 kb on - strand, within Echvi_4355at 5212.108 kb on - strand, within Echvi_4355at 5212.149 kb on + strand, within Echvi_4355at 5212.195 kb on + strand, within Echvi_4355at 5212.267 kb on - strand, within Echvi_4355at 5212.267 kb on - strand, within Echvi_4355at 5212.267 kb on - strand, within Echvi_4355at 5212.274 kb on + strand, within Echvi_4355at 5212.426 kb on - strand, within Echvi_4355at 5212.482 kb on + strand, within Echvi_4355at 5212.482 kb on + strand, within Echvi_4355at 5212.483 kb on - strand, within Echvi_4355at 5212.483 kb on - strand, within Echvi_4355at 5212.556 kb on + strand, within Echvi_4355at 5212.648 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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5,210,147 - Echvi_4353 0.32 -0.0
5,210,181 - Echvi_4353 0.35 +0.1
5,210,188 + Echvi_4353 0.35 +1.7
5,210,212 - Echvi_4353 0.37 -0.1
5,210,212 - Echvi_4353 0.37 +0.4
5,210,212 - Echvi_4353 0.37 +1.0
5,210,215 - Echvi_4353 0.37 +0.1
5,210,225 - Echvi_4353 0.38 -0.6
5,210,288 + Echvi_4353 0.42 +0.5
5,210,296 + Echvi_4353 0.43 +0.9
5,210,343 - Echvi_4353 0.46 +1.7
5,210,360 - Echvi_4353 0.47 -0.1
5,210,360 - Echvi_4353 0.47 +0.1
5,210,361 + Echvi_4353 0.47 +1.1
5,210,362 - Echvi_4353 0.47 +0.4
5,210,362 - Echvi_4353 0.47 +0.7
5,210,455 + Echvi_4353 0.54 -1.1
5,210,465 - Echvi_4353 0.54 +0.1
5,210,465 - Echvi_4353 0.54 +0.2
5,210,465 - Echvi_4353 0.54 +0.3
5,210,466 + Echvi_4353 0.54 -0.2
5,210,466 + Echvi_4353 0.54 -0.3
5,210,467 - Echvi_4353 0.54 -0.1
5,210,478 + Echvi_4353 0.55 +0.5
5,210,545 + Echvi_4353 0.60 +0.3
5,210,572 + Echvi_4353 0.62 +0.1
5,210,573 - Echvi_4353 0.62 -0.7
5,210,573 - Echvi_4353 0.62 +0.2
5,210,575 + Echvi_4353 0.62 -0.9
5,210,576 - Echvi_4353 0.62 -0.0
5,210,576 - Echvi_4353 0.62 -0.0
5,210,576 - Echvi_4353 0.62 -0.1
5,210,644 + Echvi_4353 0.67 -0.7
5,210,644 + Echvi_4353 0.67 -0.3
5,210,645 - Echvi_4353 0.67 -0.4
5,210,645 - Echvi_4353 0.67 -0.9
5,210,645 - Echvi_4353 0.67 -0.3
5,210,647 - Echvi_4353 0.67 +0.6
5,210,647 - Echvi_4353 0.67 -1.6
5,210,672 + Echvi_4353 0.69 +0.0
5,210,699 - Echvi_4353 0.71 +0.9
5,210,710 - Echvi_4353 0.71 +0.9
5,210,758 + Echvi_4353 0.75 -0.3
5,210,771 - Echvi_4353 0.76 +0.4
5,210,827 + Echvi_4353 0.79 +1.0
5,210,828 - Echvi_4353 0.79 +1.0
5,210,829 + Echvi_4353 0.80 +0.7
5,210,829 + Echvi_4353 0.80 -0.7
5,210,829 + Echvi_4353 0.80 +1.0
5,210,829 + Echvi_4353 0.80 -0.1
5,210,829 + Echvi_4353 0.80 -0.9
5,210,829 + Echvi_4353 0.80 +0.6
5,210,829 + Echvi_4353 0.80 -0.2
5,210,829 + Echvi_4353 0.80 -0.9
5,210,829 + Echvi_4353 0.80 +0.0
5,210,830 - Echvi_4353 0.80 +0.5
5,210,830 - Echvi_4353 0.80 -0.4
5,210,830 - Echvi_4353 0.80 -0.9
5,210,830 - Echvi_4353 0.80 +1.7
5,210,830 - Echvi_4353 0.80 -0.8
5,210,830 - Echvi_4353 0.80 -0.9
5,210,831 + Echvi_4353 0.80 +0.0
5,210,831 + Echvi_4353 0.80 -0.0
5,210,831 + Echvi_4353 0.80 +2.4
5,210,831 + Echvi_4353 0.80 +0.1
5,210,831 + Echvi_4353 0.80 -0.6
5,210,831 + Echvi_4353 0.80 -0.6
5,210,832 - Echvi_4353 0.80 +0.1
5,210,832 - Echvi_4353 0.80 -0.4
5,210,845 + Echvi_4353 0.81 -1.4
5,210,846 - Echvi_4353 0.81 -0.7
5,210,846 - Echvi_4353 0.81 -1.4
5,210,846 - Echvi_4353 0.81 +0.7
5,210,850 + Echvi_4353 0.81 -1.6
5,210,851 - Echvi_4353 0.81 -0.2
5,210,854 + Echvi_4353 0.81 +0.3
5,210,854 + Echvi_4353 0.81 +0.5
5,210,854 + Echvi_4353 0.81 -0.8
5,210,854 + Echvi_4353 0.81 +0.1
5,210,854 + Echvi_4353 0.81 -0.1
5,210,855 - Echvi_4353 0.81 +0.4
5,210,855 - Echvi_4353 0.81 -1.7
5,210,876 - Echvi_4353 0.83 -0.4
5,210,904 + Echvi_4353 0.85 +0.8
5,210,904 + Echvi_4353 0.85 -0.6
5,210,904 + Echvi_4353 0.85 -0.7
5,210,904 + Echvi_4353 0.85 +0.7
5,210,904 + Echvi_4353 0.85 +2.1
5,210,977 + Echvi_4353 0.90 +0.0
5,211,008 + -1.2
5,211,008 + +0.4
5,211,009 - -0.4
5,211,009 - +1.2
5,211,009 - +0.0
5,211,009 - -1.8
5,211,009 - +0.1
5,211,068 - -0.3
5,211,097 + +0.5
5,211,103 + -0.6
5,211,113 - -0.6
5,211,125 + +0.1
5,211,125 + -0.1
5,211,125 + -2.7
5,211,126 - -0.7
5,211,126 - -0.4
5,211,126 - +0.1
5,211,131 - +0.0
5,211,134 - +0.6
5,211,134 - -2.1
5,211,153 + -0.1
5,211,153 + -2.5
5,211,154 - +1.2
5,211,156 - -1.0
5,211,167 + +0.5
5,211,167 + -0.3
5,211,167 + +0.5
5,211,167 + +1.1
5,211,168 - -0.7
5,211,169 + +0.1
5,211,169 + +0.0
5,211,169 + +0.3
5,211,170 - +0.4
5,211,229 - Echvi_4354 0.20 +0.1
5,211,233 + Echvi_4354 0.21 +0.7
5,211,241 + Echvi_4354 0.22 +0.2
5,211,241 + Echvi_4354 0.22 +1.4
5,211,241 + Echvi_4354 0.22 +0.3
5,211,244 + Echvi_4354 0.23 -0.4
5,211,244 + Echvi_4354 0.23 -0.8
5,211,244 + Echvi_4354 0.23 +2.7
5,211,245 - Echvi_4354 0.23 -0.2
5,211,310 - Echvi_4354 0.35 +0.7
5,211,326 - Echvi_4354 0.37 -1.7
5,211,330 + Echvi_4354 0.38 +0.6
5,211,330 + Echvi_4354 0.38 +1.5
5,211,330 + Echvi_4354 0.38 +0.7
5,211,331 - Echvi_4354 0.38 +0.4
5,211,331 - Echvi_4354 0.38 -1.3
5,211,331 - Echvi_4354 0.38 +0.4
5,211,345 - Echvi_4354 0.41 -0.2
5,211,345 - Echvi_4354 0.41 +0.2
5,211,347 - Echvi_4354 0.41 -1.0
5,211,347 - Echvi_4354 0.41 -0.4
5,211,347 - Echvi_4354 0.41 -0.2
5,211,347 - Echvi_4354 0.41 -0.2
5,211,372 - Echvi_4354 0.46 +0.1
5,211,378 + Echvi_4354 0.47 +0.3
5,211,418 + Echvi_4354 0.54 +0.3
5,211,419 - Echvi_4354 0.54 +1.0
5,211,421 + Echvi_4354 0.54 -0.0
5,211,421 + Echvi_4354 0.54 +0.7
5,211,422 - Echvi_4354 0.55 +1.1
5,211,462 + Echvi_4354 0.62 +0.2
5,211,534 + Echvi_4354 0.75 +0.5
5,211,534 + Echvi_4354 0.75 -2.2
5,211,535 - Echvi_4354 0.75 -1.4
5,211,538 + Echvi_4354 0.75 +1.7
5,211,571 + Echvi_4354 0.81 +0.3
5,211,597 - Echvi_4354 0.86 -0.0
5,211,776 + +0.7
5,211,777 - -0.9
5,211,809 - +0.5
5,211,833 + -0.2
5,211,889 + +0.7
5,211,889 + +0.4
5,211,892 + -1.8
5,211,893 - -0.8
5,211,912 + -1.1
5,211,913 - -0.3
5,211,913 - +0.7
5,211,913 - -0.4
5,211,913 - -1.1
5,212,107 + Echvi_4355 0.25 -0.4
5,212,107 + Echvi_4355 0.25 +0.5
5,212,107 + Echvi_4355 0.25 +1.3
5,212,107 + Echvi_4355 0.25 +0.6
5,212,107 + Echvi_4355 0.25 +0.4
5,212,107 + Echvi_4355 0.25 -0.3
5,212,107 + Echvi_4355 0.25 +2.5
5,212,108 - Echvi_4355 0.25 +0.3
5,212,108 - Echvi_4355 0.25 +0.1
5,212,149 + Echvi_4355 0.31 -0.3
5,212,195 + Echvi_4355 0.36 +0.9
5,212,267 - Echvi_4355 0.46 -0.1
5,212,267 - Echvi_4355 0.46 +0.3
5,212,267 - Echvi_4355 0.46 +0.2
5,212,274 + Echvi_4355 0.47 -2.4
5,212,426 - Echvi_4355 0.66 +0.1
5,212,482 + Echvi_4355 0.73 -2.3
5,212,482 + Echvi_4355 0.73 +1.2
5,212,483 - Echvi_4355 0.73 -1.0
5,212,483 - Echvi_4355 0.73 -0.2
5,212,556 + Echvi_4355 0.83 +0.2
5,212,648 - -0.9

Or see this region's nucleotide sequence