Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4327 and Echvi_4328 are separated by 138 nucleotides Echvi_4328 and Echvi_4329 are separated by 23 nucleotides Echvi_4329 and Echvi_4330 are separated by 46 nucleotides
Echvi_4327: Echvi_4327 - RNA polymerase sigma-70 factor, Bacteroides expansion family 1, at 5,172,793 to 5,173,344
_4327
Echvi_4328: Echvi_4328 - hypothetical protein, at 5,173,483 to 5,174,100
_4328
Echvi_4329: Echvi_4329 - Outer membrane receptor proteins, mostly Fe transport, at 5,174,124 to 5,176,478
_4329
Echvi_4330: Echvi_4330 - hypothetical protein, at 5,176,525 to 5,177,778
_4330
Position (kb) 5174
5175
5176
5177 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5173.449 kb on + strand at 5173.451 kb on + strand at 5173.451 kb on + strand at 5173.452 kb on - strand at 5173.513 kb on + strand at 5173.514 kb on - strand at 5173.515 kb on + strand at 5173.631 kb on + strand, within Echvi_4328 at 5173.778 kb on + strand, within Echvi_4328 at 5173.827 kb on + strand, within Echvi_4328 at 5173.828 kb on - strand, within Echvi_4328 at 5173.828 kb on - strand, within Echvi_4328 at 5173.828 kb on - strand, within Echvi_4328 at 5173.915 kb on + strand, within Echvi_4328 at 5173.916 kb on - strand, within Echvi_4328 at 5173.990 kb on + strand, within Echvi_4328 at 5173.991 kb on - strand, within Echvi_4328 at 5173.991 kb on - strand, within Echvi_4328 at 5173.993 kb on + strand, within Echvi_4328 at 5173.994 kb on - strand, within Echvi_4328 at 5174.001 kb on + strand, within Echvi_4328 at 5174.057 kb on - strand at 5174.085 kb on + strand at 5174.086 kb on - strand at 5174.088 kb on + strand at 5174.088 kb on + strand at 5174.088 kb on + strand at 5174.089 kb on - strand at 5174.089 kb on - strand at 5174.090 kb on + strand at 5174.134 kb on + strand at 5174.401 kb on - strand, within Echvi_4329 at 5174.401 kb on - strand, within Echvi_4329 at 5174.654 kb on + strand, within Echvi_4329 at 5174.704 kb on + strand, within Echvi_4329 at 5174.730 kb on + strand, within Echvi_4329 at 5174.733 kb on - strand, within Echvi_4329 at 5174.832 kb on + strand, within Echvi_4329 at 5174.925 kb on + strand, within Echvi_4329 at 5174.925 kb on + strand, within Echvi_4329 at 5174.925 kb on + strand, within Echvi_4329 at 5174.925 kb on + strand, within Echvi_4329 at 5174.926 kb on - strand, within Echvi_4329 at 5174.926 kb on - strand, within Echvi_4329 at 5174.926 kb on - strand, within Echvi_4329 at 5174.926 kb on - strand, within Echvi_4329 at 5174.926 kb on - strand, within Echvi_4329 at 5174.946 kb on + strand, within Echvi_4329 at 5175.248 kb on + strand, within Echvi_4329 at 5175.248 kb on + strand, within Echvi_4329 at 5175.252 kb on + strand, within Echvi_4329 at 5175.291 kb on + strand, within Echvi_4329 at 5175.291 kb on + strand, within Echvi_4329 at 5175.292 kb on - strand, within Echvi_4329 at 5175.292 kb on - strand, within Echvi_4329 at 5175.292 kb on - strand, within Echvi_4329 at 5175.292 kb on - strand, within Echvi_4329 at 5175.292 kb on - strand, within Echvi_4329 at 5175.293 kb on + strand, within Echvi_4329 at 5175.293 kb on + strand, within Echvi_4329 at 5175.293 kb on + strand, within Echvi_4329 at 5175.383 kb on - strand, within Echvi_4329 at 5175.400 kb on - strand, within Echvi_4329 at 5175.400 kb on - strand, within Echvi_4329 at 5175.468 kb on + strand, within Echvi_4329 at 5175.468 kb on + strand, within Echvi_4329 at 5175.469 kb on - strand, within Echvi_4329 at 5175.469 kb on - strand, within Echvi_4329 at 5175.469 kb on - strand, within Echvi_4329 at 5175.469 kb on - strand, within Echvi_4329 at 5175.536 kb on - strand, within Echvi_4329 at 5175.536 kb on - strand, within Echvi_4329 at 5175.548 kb on + strand, within Echvi_4329 at 5175.548 kb on + strand, within Echvi_4329 at 5175.625 kb on - strand, within Echvi_4329 at 5175.812 kb on + strand, within Echvi_4329 at 5175.813 kb on - strand, within Echvi_4329 at 5175.833 kb on - strand, within Echvi_4329 at 5175.953 kb on + strand, within Echvi_4329 at 5175.953 kb on + strand, within Echvi_4329 at 5176.015 kb on + strand, within Echvi_4329 at 5176.015 kb on + strand, within Echvi_4329 at 5176.159 kb on - strand, within Echvi_4329 at 5176.172 kb on + strand, within Echvi_4329 at 5176.173 kb on - strand, within Echvi_4329 at 5176.180 kb on + strand, within Echvi_4329 at 5176.180 kb on + strand, within Echvi_4329 at 5176.180 kb on + strand, within Echvi_4329 at 5176.180 kb on + strand, within Echvi_4329 at 5176.181 kb on - strand, within Echvi_4329 at 5176.181 kb on - strand, within Echvi_4329 at 5176.181 kb on - strand, within Echvi_4329 at 5176.181 kb on - strand, within Echvi_4329 at 5176.181 kb on - strand, within Echvi_4329 at 5176.185 kb on + strand, within Echvi_4329 at 5176.250 kb on - strand at 5176.250 kb on - strand at 5176.260 kb on + strand at 5176.342 kb on - strand at 5176.413 kb on + strand at 5176.452 kb on + strand at 5176.453 kb on - strand at 5176.503 kb on + strand at 5176.503 kb on + strand at 5176.504 kb on - strand at 5176.504 kb on - strand at 5176.504 kb on - strand at 5176.508 kb on - strand at 5176.508 kb on - strand at 5176.509 kb on + strand at 5176.516 kb on + strand at 5176.677 kb on - strand, within Echvi_4330 at 5176.715 kb on - strand, within Echvi_4330 at 5176.715 kb on - strand, within Echvi_4330 at 5176.717 kb on - strand, within Echvi_4330 at 5176.942 kb on - strand, within Echvi_4330 at 5176.944 kb on + strand, within Echvi_4330 at 5176.944 kb on + strand, within Echvi_4330 at 5176.963 kb on - strand, within Echvi_4330 at 5176.970 kb on - strand, within Echvi_4330 at 5176.981 kb on + strand, within Echvi_4330 at 5176.982 kb on - strand, within Echvi_4330 at 5176.982 kb on - strand, within Echvi_4330 at 5176.984 kb on - strand, within Echvi_4330 at 5176.984 kb on - strand, within Echvi_4330 at 5177.128 kb on + strand, within Echvi_4330 at 5177.129 kb on - strand, within Echvi_4330 at 5177.129 kb on - strand, within Echvi_4330 at 5177.130 kb on + strand, within Echvi_4330 at 5177.130 kb on + strand, within Echvi_4330 at 5177.167 kb on + strand, within Echvi_4330 at 5177.225 kb on - strand, within Echvi_4330 at 5177.302 kb on + strand, within Echvi_4330 at 5177.303 kb on - strand, within Echvi_4330 at 5177.303 kb on - strand, within Echvi_4330 at 5177.357 kb on + strand, within Echvi_4330 at 5177.407 kb on + strand, within Echvi_4330 at 5177.407 kb on + strand, within Echvi_4330 at 5177.407 kb on + strand, within Echvi_4330 at 5177.428 kb on + strand, within Echvi_4330 at 5177.431 kb on - strand, within Echvi_4330 at 5177.431 kb on - strand, within Echvi_4330 at 5177.477 kb on - strand, within Echvi_4330 at 5177.477 kb on - strand, within Echvi_4330 at 5177.477 kb on - strand, within Echvi_4330 at 5177.477 kb on - strand, within Echvi_4330
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 5,173,449 + +0.7 5,173,451 + -0.5 5,173,451 + -2.5 5,173,452 - +0.6 5,173,513 + -0.6 5,173,514 - +0.7 5,173,515 + +0.3 5,173,631 + Echvi_4328 0.24 +1.5 5,173,778 + Echvi_4328 0.48 -0.4 5,173,827 + Echvi_4328 0.56 -0.7 5,173,828 - Echvi_4328 0.56 -0.3 5,173,828 - Echvi_4328 0.56 -1.4 5,173,828 - Echvi_4328 0.56 -0.2 5,173,915 + Echvi_4328 0.70 -0.7 5,173,916 - Echvi_4328 0.70 -0.1 5,173,990 + Echvi_4328 0.82 +0.8 5,173,991 - Echvi_4328 0.82 -0.3 5,173,991 - Echvi_4328 0.82 -1.0 5,173,993 + Echvi_4328 0.83 -1.0 5,173,994 - Echvi_4328 0.83 -0.1 5,174,001 + Echvi_4328 0.84 +0.0 5,174,057 - +0.3 5,174,085 + -1.0 5,174,086 - -1.4 5,174,088 + +1.2 5,174,088 + -1.5 5,174,088 + +0.1 5,174,089 - +0.2 5,174,089 - +0.0 5,174,090 + -0.5 5,174,134 + +2.2 5,174,401 - Echvi_4329 0.12 -0.9 5,174,401 - Echvi_4329 0.12 +0.2 5,174,654 + Echvi_4329 0.23 +0.1 5,174,704 + Echvi_4329 0.25 -0.6 5,174,730 + Echvi_4329 0.26 -0.9 5,174,733 - Echvi_4329 0.26 +0.2 5,174,832 + Echvi_4329 0.30 -0.3 5,174,925 + Echvi_4329 0.34 -0.7 5,174,925 + Echvi_4329 0.34 -0.6 5,174,925 + Echvi_4329 0.34 -0.6 5,174,925 + Echvi_4329 0.34 -0.2 5,174,926 - Echvi_4329 0.34 +0.3 5,174,926 - Echvi_4329 0.34 +0.3 5,174,926 - Echvi_4329 0.34 +0.4 5,174,926 - Echvi_4329 0.34 -0.8 5,174,926 - Echvi_4329 0.34 -2.0 5,174,946 + Echvi_4329 0.35 -0.6 5,175,248 + Echvi_4329 0.48 -1.5 5,175,248 + Echvi_4329 0.48 -1.2 5,175,252 + Echvi_4329 0.48 -0.5 5,175,291 + Echvi_4329 0.50 -0.9 5,175,291 + Echvi_4329 0.50 -0.8 5,175,292 - Echvi_4329 0.50 +1.1 5,175,292 - Echvi_4329 0.50 -0.9 5,175,292 - Echvi_4329 0.50 -0.0 5,175,292 - Echvi_4329 0.50 +0.0 5,175,292 - Echvi_4329 0.50 -0.4 5,175,293 + Echvi_4329 0.50 -0.8 5,175,293 + Echvi_4329 0.50 -0.5 5,175,293 + Echvi_4329 0.50 -1.0 5,175,383 - Echvi_4329 0.53 -0.5 5,175,400 - Echvi_4329 0.54 +1.2 5,175,400 - Echvi_4329 0.54 -1.6 5,175,468 + Echvi_4329 0.57 -1.8 5,175,468 + Echvi_4329 0.57 +0.2 5,175,469 - Echvi_4329 0.57 +0.7 5,175,469 - Echvi_4329 0.57 +0.5 5,175,469 - Echvi_4329 0.57 -0.2 5,175,469 - Echvi_4329 0.57 +0.1 5,175,536 - Echvi_4329 0.60 +0.1 5,175,536 - Echvi_4329 0.60 -0.6 5,175,548 + Echvi_4329 0.60 -0.1 5,175,548 + Echvi_4329 0.60 -0.5 5,175,625 - Echvi_4329 0.64 -0.5 5,175,812 + Echvi_4329 0.72 -2.4 5,175,813 - Echvi_4329 0.72 -0.0 5,175,833 - Echvi_4329 0.73 -0.0 5,175,953 + Echvi_4329 0.78 -1.2 5,175,953 + Echvi_4329 0.78 -0.3 5,176,015 + Echvi_4329 0.80 -1.0 5,176,015 + Echvi_4329 0.80 +1.2 5,176,159 - Echvi_4329 0.86 -0.2 5,176,172 + Echvi_4329 0.87 -1.2 5,176,173 - Echvi_4329 0.87 +0.7 5,176,180 + Echvi_4329 0.87 -1.2 5,176,180 + Echvi_4329 0.87 -1.3 5,176,180 + Echvi_4329 0.87 -0.9 5,176,180 + Echvi_4329 0.87 -1.8 5,176,181 - Echvi_4329 0.87 -0.0 5,176,181 - Echvi_4329 0.87 -0.1 5,176,181 - Echvi_4329 0.87 -1.2 5,176,181 - Echvi_4329 0.87 +1.0 5,176,181 - Echvi_4329 0.87 +0.1 5,176,185 + Echvi_4329 0.88 -0.8 5,176,250 - +1.4 5,176,250 - +0.0 5,176,260 + -1.1 5,176,342 - +0.8 5,176,413 + -0.3 5,176,452 + +1.1 5,176,453 - -0.9 5,176,503 + -0.6 5,176,503 + +0.1 5,176,504 - +0.4 5,176,504 - +0.5 5,176,504 - -1.7 5,176,508 - -1.2 5,176,508 - -0.4 5,176,509 + +1.2 5,176,516 + -1.9 5,176,677 - Echvi_4330 0.12 -1.4 5,176,715 - Echvi_4330 0.15 -2.0 5,176,715 - Echvi_4330 0.15 -0.2 5,176,717 - Echvi_4330 0.15 +1.0 5,176,942 - Echvi_4330 0.33 +1.1 5,176,944 + Echvi_4330 0.33 -0.6 5,176,944 + Echvi_4330 0.33 -0.5 5,176,963 - Echvi_4330 0.35 -1.3 5,176,970 - Echvi_4330 0.35 -0.7 5,176,981 + Echvi_4330 0.36 +0.6 5,176,982 - Echvi_4330 0.36 -0.1 5,176,982 - Echvi_4330 0.36 -0.3 5,176,984 - Echvi_4330 0.37 +0.3 5,176,984 - Echvi_4330 0.37 +0.7 5,177,128 + Echvi_4330 0.48 +0.2 5,177,129 - Echvi_4330 0.48 -0.3 5,177,129 - Echvi_4330 0.48 +0.7 5,177,130 + Echvi_4330 0.48 -0.6 5,177,130 + Echvi_4330 0.48 -1.6 5,177,167 + Echvi_4330 0.51 +0.1 5,177,225 - Echvi_4330 0.56 +1.4 5,177,302 + Echvi_4330 0.62 +1.3 5,177,303 - Echvi_4330 0.62 -1.5 5,177,303 - Echvi_4330 0.62 +0.8 5,177,357 + Echvi_4330 0.66 +0.1 5,177,407 + Echvi_4330 0.70 +2.0 5,177,407 + Echvi_4330 0.70 +0.4 5,177,407 + Echvi_4330 0.70 +0.7 5,177,428 + Echvi_4330 0.72 -0.6 5,177,431 - Echvi_4330 0.72 -0.2 5,177,431 - Echvi_4330 0.72 -0.4 5,177,477 - Echvi_4330 0.76 -1.1 5,177,477 - Echvi_4330 0.76 +0.4 5,177,477 - Echvi_4330 0.76 -0.6 5,177,477 - Echvi_4330 0.76 -0.8
Or see this region's nucleotide sequence