Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3051

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3049 and Echvi_3050 are separated by 16 nucleotidesEchvi_3050 and Echvi_3051 are separated by 280 nucleotidesEchvi_3051 and Echvi_3052 are separated by 191 nucleotides Echvi_3049: Echvi_3049 - Domain of unknown function (DU1801)., at 3,644,198 to 3,644,656 _3049 Echvi_3050: Echvi_3050 - hypothetical protein, at 3,644,673 to 3,645,068 _3050 Echvi_3051: Echvi_3051 - Ferritin-like protein, at 3,645,349 to 3,645,894 _3051 Echvi_3052: Echvi_3052 - 3-deoxy-D-manno-octulosonate cytidylyltransferase, at 3,646,086 to 3,646,895 _3052 Position (kb) 3645 3646Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3644.395 kb on - strand, within Echvi_3049at 3644.409 kb on + strand, within Echvi_3049at 3644.465 kb on - strand, within Echvi_3049at 3644.490 kb on + strand, within Echvi_3049at 3644.494 kb on + strand, within Echvi_3049at 3644.507 kb on + strand, within Echvi_3049at 3644.508 kb on - strand, within Echvi_3049at 3644.526 kb on + strand, within Echvi_3049at 3644.526 kb on + strand, within Echvi_3049at 3644.527 kb on - strand, within Echvi_3049at 3644.589 kb on - strand, within Echvi_3049at 3644.625 kb on + strandat 3644.648 kb on + strandat 3644.661 kb on + strandat 3644.661 kb on + strandat 3644.662 kb on - strandat 3644.662 kb on - strandat 3644.751 kb on + strand, within Echvi_3050at 3644.767 kb on + strand, within Echvi_3050at 3644.767 kb on + strand, within Echvi_3050at 3644.768 kb on - strand, within Echvi_3050at 3644.768 kb on - strand, within Echvi_3050at 3644.768 kb on - strand, within Echvi_3050at 3644.772 kb on - strand, within Echvi_3050at 3644.796 kb on + strand, within Echvi_3050at 3644.812 kb on + strand, within Echvi_3050at 3644.813 kb on - strand, within Echvi_3050at 3644.813 kb on - strand, within Echvi_3050at 3644.813 kb on - strand, within Echvi_3050at 3644.813 kb on - strand, within Echvi_3050at 3644.813 kb on - strand, within Echvi_3050at 3644.813 kb on - strand, within Echvi_3050at 3644.889 kb on + strand, within Echvi_3050at 3644.932 kb on - strand, within Echvi_3050at 3644.932 kb on - strand, within Echvi_3050at 3644.953 kb on + strand, within Echvi_3050at 3644.954 kb on - strand, within Echvi_3050at 3644.954 kb on - strand, within Echvi_3050at 3644.973 kb on + strand, within Echvi_3050at 3645.013 kb on - strand, within Echvi_3050at 3645.024 kb on + strand, within Echvi_3050at 3645.069 kb on - strandat 3645.086 kb on - strandat 3645.092 kb on + strandat 3645.093 kb on - strandat 3645.126 kb on + strandat 3645.209 kb on - strandat 3645.283 kb on - strandat 3645.324 kb on - strandat 3645.324 kb on - strandat 3645.327 kb on - strandat 3645.344 kb on + strandat 3645.344 kb on + strandat 3645.345 kb on - strandat 3645.363 kb on + strandat 3645.363 kb on + strandat 3645.378 kb on + strandat 3645.483 kb on + strand, within Echvi_3051at 3645.488 kb on + strand, within Echvi_3051at 3645.498 kb on + strand, within Echvi_3051at 3645.552 kb on + strand, within Echvi_3051at 3645.608 kb on - strand, within Echvi_3051at 3645.649 kb on + strand, within Echvi_3051at 3645.675 kb on + strand, within Echvi_3051at 3645.675 kb on + strand, within Echvi_3051at 3645.675 kb on + strand, within Echvi_3051at 3645.676 kb on - strand, within Echvi_3051at 3645.685 kb on + strand, within Echvi_3051at 3645.685 kb on + strand, within Echvi_3051at 3645.696 kb on + strand, within Echvi_3051at 3645.696 kb on + strand, within Echvi_3051at 3645.696 kb on + strand, within Echvi_3051at 3645.696 kb on + strand, within Echvi_3051at 3645.696 kb on + strand, within Echvi_3051at 3645.696 kb on + strand, within Echvi_3051at 3645.696 kb on + strand, within Echvi_3051at 3645.696 kb on + strand, within Echvi_3051at 3645.696 kb on + strand, within Echvi_3051at 3645.697 kb on - strand, within Echvi_3051at 3645.697 kb on - strand, within Echvi_3051at 3645.697 kb on - strand, within Echvi_3051at 3645.697 kb on - strand, within Echvi_3051at 3645.697 kb on - strand, within Echvi_3051at 3645.697 kb on - strand, within Echvi_3051at 3645.697 kb on - strand, within Echvi_3051at 3645.730 kb on + strand, within Echvi_3051at 3645.749 kb on + strand, within Echvi_3051at 3645.781 kb on + strand, within Echvi_3051at 3645.781 kb on + strand, within Echvi_3051at 3645.782 kb on - strand, within Echvi_3051at 3645.782 kb on - strand, within Echvi_3051at 3645.782 kb on - strand, within Echvi_3051at 3645.786 kb on - strand, within Echvi_3051at 3645.802 kb on - strand, within Echvi_3051at 3645.840 kb on + strandat 3645.871 kb on + strandat 3646.197 kb on + strand, within Echvi_3052at 3646.227 kb on - strand, within Echvi_3052at 3646.266 kb on + strand, within Echvi_3052at 3646.267 kb on - strand, within Echvi_3052at 3646.275 kb on - strand, within Echvi_3052at 3646.403 kb on + strand, within Echvi_3052at 3646.444 kb on + strand, within Echvi_3052at 3646.515 kb on - strand, within Echvi_3052at 3646.562 kb on - strand, within Echvi_3052at 3646.562 kb on - strand, within Echvi_3052at 3646.562 kb on - strand, within Echvi_3052at 3646.601 kb on + strand, within Echvi_3052at 3646.621 kb on - strand, within Echvi_3052at 3646.676 kb on + strand, within Echvi_3052at 3646.693 kb on - strand, within Echvi_3052at 3646.699 kb on - strand, within Echvi_3052at 3646.699 kb on - strand, within Echvi_3052at 3646.700 kb on + strand, within Echvi_3052at 3646.722 kb on + strand, within Echvi_3052at 3646.722 kb on + strand, within Echvi_3052at 3646.723 kb on - strand, within Echvi_3052

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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3,644,395 - Echvi_3049 0.43 +0.3
3,644,409 + Echvi_3049 0.46 -1.6
3,644,465 - Echvi_3049 0.58 -0.6
3,644,490 + Echvi_3049 0.64 -0.3
3,644,494 + Echvi_3049 0.64 +0.3
3,644,507 + Echvi_3049 0.67 +0.7
3,644,508 - Echvi_3049 0.68 -1.7
3,644,526 + Echvi_3049 0.71 -1.0
3,644,526 + Echvi_3049 0.71 +0.2
3,644,527 - Echvi_3049 0.72 +0.3
3,644,589 - Echvi_3049 0.85 -0.9
3,644,625 + -1.8
3,644,648 + -0.2
3,644,661 + -1.8
3,644,661 + -0.7
3,644,662 - +1.2
3,644,662 - -1.1
3,644,751 + Echvi_3050 0.20 +1.4
3,644,767 + Echvi_3050 0.24 -0.4
3,644,767 + Echvi_3050 0.24 +0.6
3,644,768 - Echvi_3050 0.24 +2.2
3,644,768 - Echvi_3050 0.24 +0.3
3,644,768 - Echvi_3050 0.24 -1.1
3,644,772 - Echvi_3050 0.25 +1.1
3,644,796 + Echvi_3050 0.31 +1.2
3,644,812 + Echvi_3050 0.35 -0.4
3,644,813 - Echvi_3050 0.35 +0.0
3,644,813 - Echvi_3050 0.35 +0.4
3,644,813 - Echvi_3050 0.35 +0.3
3,644,813 - Echvi_3050 0.35 -0.3
3,644,813 - Echvi_3050 0.35 +0.2
3,644,813 - Echvi_3050 0.35 +0.1
3,644,889 + Echvi_3050 0.55 -0.4
3,644,932 - Echvi_3050 0.65 +0.2
3,644,932 - Echvi_3050 0.65 -0.9
3,644,953 + Echvi_3050 0.71 +0.3
3,644,954 - Echvi_3050 0.71 -0.4
3,644,954 - Echvi_3050 0.71 +0.4
3,644,973 + Echvi_3050 0.76 -1.5
3,645,013 - Echvi_3050 0.86 +0.1
3,645,024 + Echvi_3050 0.89 +0.7
3,645,069 - +0.5
3,645,086 - -0.0
3,645,092 + -0.8
3,645,093 - -0.5
3,645,126 + -0.7
3,645,209 - +1.1
3,645,283 - -1.9
3,645,324 - -1.5
3,645,324 - -0.7
3,645,327 - -0.7
3,645,344 + -0.7
3,645,344 + -0.5
3,645,345 - +0.3
3,645,363 + -1.2
3,645,363 + -2.7
3,645,378 + -1.1
3,645,483 + Echvi_3051 0.25 -1.4
3,645,488 + Echvi_3051 0.25 +0.1
3,645,498 + Echvi_3051 0.27 -1.3
3,645,552 + Echvi_3051 0.37 -0.9
3,645,608 - Echvi_3051 0.47 -0.6
3,645,649 + Echvi_3051 0.55 -1.7
3,645,675 + Echvi_3051 0.60 -2.2
3,645,675 + Echvi_3051 0.60 -0.3
3,645,675 + Echvi_3051 0.60 -0.9
3,645,676 - Echvi_3051 0.60 -1.2
3,645,685 + Echvi_3051 0.62 -0.0
3,645,685 + Echvi_3051 0.62 -0.0
3,645,696 + Echvi_3051 0.64 -2.9
3,645,696 + Echvi_3051 0.64 -1.3
3,645,696 + Echvi_3051 0.64 -1.2
3,645,696 + Echvi_3051 0.64 -1.8
3,645,696 + Echvi_3051 0.64 -2.4
3,645,696 + Echvi_3051 0.64 -2.3
3,645,696 + Echvi_3051 0.64 -1.1
3,645,696 + Echvi_3051 0.64 -0.7
3,645,696 + Echvi_3051 0.64 -2.5
3,645,697 - Echvi_3051 0.64 -0.7
3,645,697 - Echvi_3051 0.64 -2.3
3,645,697 - Echvi_3051 0.64 -1.0
3,645,697 - Echvi_3051 0.64 -0.6
3,645,697 - Echvi_3051 0.64 -1.8
3,645,697 - Echvi_3051 0.64 -1.9
3,645,697 - Echvi_3051 0.64 -2.7
3,645,730 + Echvi_3051 0.70 -0.3
3,645,749 + Echvi_3051 0.73 -1.5
3,645,781 + Echvi_3051 0.79 +0.1
3,645,781 + Echvi_3051 0.79 -0.9
3,645,782 - Echvi_3051 0.79 +1.0
3,645,782 - Echvi_3051 0.79 -0.6
3,645,782 - Echvi_3051 0.79 -1.5
3,645,786 - Echvi_3051 0.80 -1.2
3,645,802 - Echvi_3051 0.83 -1.4
3,645,840 + -1.2
3,645,871 + -1.2
3,646,197 + Echvi_3052 0.14 +0.2
3,646,227 - Echvi_3052 0.17 -1.4
3,646,266 + Echvi_3052 0.22 -0.6
3,646,267 - Echvi_3052 0.22 -0.2
3,646,275 - Echvi_3052 0.23 +0.8
3,646,403 + Echvi_3052 0.39 -1.0
3,646,444 + Echvi_3052 0.44 -0.9
3,646,515 - Echvi_3052 0.53 -0.3
3,646,562 - Echvi_3052 0.59 -1.0
3,646,562 - Echvi_3052 0.59 -0.4
3,646,562 - Echvi_3052 0.59 -0.8
3,646,601 + Echvi_3052 0.64 -0.1
3,646,621 - Echvi_3052 0.66 -1.4
3,646,676 + Echvi_3052 0.73 -1.2
3,646,693 - Echvi_3052 0.75 +0.4
3,646,699 - Echvi_3052 0.76 +0.0
3,646,699 - Echvi_3052 0.76 -0.8
3,646,700 + Echvi_3052 0.76 +0.4
3,646,722 + Echvi_3052 0.79 -2.2
3,646,722 + Echvi_3052 0.79 -0.7
3,646,723 - Echvi_3052 0.79 -1.7

Or see this region's nucleotide sequence