Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1134

Experiment: m.b. D-Cycloserine 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_1132 and Echvi_1133 are separated by 62 nucleotidesEchvi_1133 and Echvi_1134 are separated by 219 nucleotidesEchvi_1134 and Echvi_1135 are separated by 15 nucleotidesEchvi_1135 and Echvi_1136 are separated by 131 nucleotides Echvi_1132: Echvi_1132 - hypothetical protein, at 1,294,910 to 1,295,218 _1132 Echvi_1133: Echvi_1133 - FKBP-type peptidyl-prolyl cis-trans isomerases 2, at 1,295,281 to 1,295,793 _1133 Echvi_1134: Echvi_1134 - Membrane protein TerC, possibly involved in tellurium resistance, at 1,296,013 to 1,296,765 _1134 Echvi_1135: Echvi_1135 - hypothetical protein, at 1,296,781 to 1,297,545 _1135 Echvi_1136: Echvi_1136 - Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases, at 1,297,677 to 1,298,000 _1136 Position (kb) 1296 1297Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1295.014 kb on + strand, within Echvi_1132at 1295.015 kb on - strand, within Echvi_1132at 1295.113 kb on - strand, within Echvi_1132at 1295.140 kb on + strand, within Echvi_1132at 1295.141 kb on - strand, within Echvi_1132at 1295.141 kb on - strand, within Echvi_1132at 1295.141 kb on - strand, within Echvi_1132at 1295.141 kb on - strand, within Echvi_1132at 1295.141 kb on - strand, within Echvi_1132at 1295.141 kb on - strand, within Echvi_1132at 1295.141 kb on - strand, within Echvi_1132at 1295.141 kb on - strand, within Echvi_1132at 1295.141 kb on - strand, within Echvi_1132at 1295.160 kb on + strand, within Echvi_1132at 1295.166 kb on - strand, within Echvi_1132at 1295.381 kb on + strand, within Echvi_1133at 1295.382 kb on - strand, within Echvi_1133at 1295.491 kb on + strand, within Echvi_1133at 1295.571 kb on - strand, within Echvi_1133at 1295.579 kb on + strand, within Echvi_1133at 1295.580 kb on - strand, within Echvi_1133at 1295.599 kb on - strand, within Echvi_1133at 1295.603 kb on - strand, within Echvi_1133at 1295.603 kb on - strand, within Echvi_1133at 1295.661 kb on + strand, within Echvi_1133at 1295.661 kb on + strand, within Echvi_1133at 1295.743 kb on + strandat 1295.743 kb on + strandat 1295.744 kb on - strandat 1295.744 kb on - strandat 1295.757 kb on - strandat 1295.776 kb on - strandat 1295.776 kb on - strandat 1295.797 kb on - strandat 1295.808 kb on - strandat 1295.808 kb on - strandat 1295.834 kb on + strandat 1295.834 kb on + strandat 1295.834 kb on + strandat 1295.947 kb on + strandat 1295.999 kb on + strandat 1296.020 kb on + strandat 1296.090 kb on + strand, within Echvi_1134at 1296.093 kb on + strand, within Echvi_1134at 1296.093 kb on + strand, within Echvi_1134at 1296.098 kb on + strand, within Echvi_1134at 1296.120 kb on + strand, within Echvi_1134at 1296.120 kb on + strand, within Echvi_1134at 1296.133 kb on + strand, within Echvi_1134at 1296.133 kb on + strand, within Echvi_1134at 1296.211 kb on + strand, within Echvi_1134at 1296.212 kb on - strand, within Echvi_1134at 1296.213 kb on + strand, within Echvi_1134at 1296.213 kb on + strand, within Echvi_1134at 1296.213 kb on + strand, within Echvi_1134at 1296.218 kb on + strand, within Echvi_1134at 1296.218 kb on + strand, within Echvi_1134at 1296.219 kb on - strand, within Echvi_1134at 1296.219 kb on - strand, within Echvi_1134at 1296.225 kb on + strand, within Echvi_1134at 1296.333 kb on + strand, within Echvi_1134at 1296.333 kb on + strand, within Echvi_1134at 1296.333 kb on + strand, within Echvi_1134at 1296.333 kb on + strand, within Echvi_1134at 1296.334 kb on - strand, within Echvi_1134at 1296.334 kb on - strand, within Echvi_1134at 1296.359 kb on + strand, within Echvi_1134at 1296.360 kb on - strand, within Echvi_1134at 1296.360 kb on - strand, within Echvi_1134at 1296.417 kb on + strand, within Echvi_1134at 1296.470 kb on + strand, within Echvi_1134at 1296.470 kb on + strand, within Echvi_1134at 1296.470 kb on + strand, within Echvi_1134at 1296.470 kb on + strand, within Echvi_1134at 1296.470 kb on + strand, within Echvi_1134at 1296.470 kb on + strand, within Echvi_1134at 1296.471 kb on - strand, within Echvi_1134at 1296.471 kb on - strand, within Echvi_1134at 1296.483 kb on + strand, within Echvi_1134at 1296.544 kb on - strand, within Echvi_1134at 1296.544 kb on - strand, within Echvi_1134at 1296.558 kb on + strand, within Echvi_1134at 1296.558 kb on + strand, within Echvi_1134at 1296.614 kb on + strand, within Echvi_1134at 1296.646 kb on + strand, within Echvi_1134at 1296.646 kb on + strand, within Echvi_1134at 1296.646 kb on + strand, within Echvi_1134at 1296.647 kb on - strand, within Echvi_1134at 1296.647 kb on - strand, within Echvi_1134at 1296.647 kb on - strand, within Echvi_1134at 1296.647 kb on - strand, within Echvi_1134at 1296.648 kb on + strand, within Echvi_1134at 1296.648 kb on + strand, within Echvi_1134at 1296.649 kb on - strand, within Echvi_1134at 1296.649 kb on - strand, within Echvi_1134at 1296.649 kb on - strand, within Echvi_1134at 1296.649 kb on - strand, within Echvi_1134at 1296.649 kb on - strand, within Echvi_1134at 1296.652 kb on + strand, within Echvi_1134at 1296.653 kb on - strand, within Echvi_1134at 1296.653 kb on - strand, within Echvi_1134at 1296.653 kb on - strand, within Echvi_1134at 1296.653 kb on - strand, within Echvi_1134at 1296.776 kb on + strandat 1296.776 kb on + strandat 1296.777 kb on - strandat 1296.777 kb on - strandat 1296.782 kb on + strandat 1296.812 kb on + strandat 1296.812 kb on + strandat 1296.813 kb on - strandat 1296.813 kb on - strandat 1296.813 kb on - strandat 1296.842 kb on + strandat 1296.866 kb on - strand, within Echvi_1135at 1296.902 kb on + strand, within Echvi_1135at 1296.902 kb on + strand, within Echvi_1135at 1296.903 kb on - strand, within Echvi_1135at 1296.959 kb on + strand, within Echvi_1135at 1296.959 kb on + strand, within Echvi_1135at 1296.959 kb on + strand, within Echvi_1135at 1296.968 kb on + strand, within Echvi_1135at 1297.183 kb on + strand, within Echvi_1135at 1297.206 kb on + strand, within Echvi_1135at 1297.214 kb on + strand, within Echvi_1135at 1297.214 kb on + strand, within Echvi_1135at 1297.251 kb on + strand, within Echvi_1135at 1297.251 kb on + strand, within Echvi_1135at 1297.253 kb on + strand, within Echvi_1135at 1297.253 kb on + strand, within Echvi_1135at 1297.253 kb on + strand, within Echvi_1135at 1297.254 kb on - strand, within Echvi_1135at 1297.254 kb on - strand, within Echvi_1135at 1297.254 kb on - strand, within Echvi_1135at 1297.257 kb on + strand, within Echvi_1135at 1297.257 kb on + strand, within Echvi_1135at 1297.258 kb on - strand, within Echvi_1135at 1297.258 kb on - strandat 1297.258 kb on - strand, within Echvi_1135at 1297.260 kb on + strand, within Echvi_1135at 1297.260 kb on + strand, within Echvi_1135at 1297.261 kb on - strand, within Echvi_1135at 1297.317 kb on + strand, within Echvi_1135at 1297.317 kb on + strand, within Echvi_1135at 1297.317 kb on + strand, within Echvi_1135at 1297.317 kb on + strand, within Echvi_1135at 1297.317 kb on + strand, within Echvi_1135at 1297.318 kb on - strand, within Echvi_1135at 1297.318 kb on - strand, within Echvi_1135at 1297.318 kb on - strand, within Echvi_1135at 1297.318 kb on - strand, within Echvi_1135at 1297.318 kb on - strand, within Echvi_1135at 1297.318 kb on - strand, within Echvi_1135at 1297.330 kb on + strand, within Echvi_1135at 1297.330 kb on + strand, within Echvi_1135at 1297.330 kb on + strand, within Echvi_1135at 1297.330 kb on + strand, within Echvi_1135at 1297.331 kb on - strand, within Echvi_1135at 1297.331 kb on - strand, within Echvi_1135at 1297.337 kb on + strand, within Echvi_1135at 1297.337 kb on + strand, within Echvi_1135at 1297.337 kb on + strand, within Echvi_1135at 1297.338 kb on - strand, within Echvi_1135at 1297.339 kb on + strand, within Echvi_1135at 1297.339 kb on + strand, within Echvi_1135at 1297.339 kb on + strand, within Echvi_1135at 1297.339 kb on + strand, within Echvi_1135at 1297.339 kb on + strand, within Echvi_1135at 1297.340 kb on - strand, within Echvi_1135at 1297.340 kb on - strand, within Echvi_1135at 1297.340 kb on - strand, within Echvi_1135at 1297.359 kb on + strand, within Echvi_1135at 1297.403 kb on + strand, within Echvi_1135at 1297.403 kb on + strand, within Echvi_1135at 1297.460 kb on + strand, within Echvi_1135at 1297.460 kb on + strand, within Echvi_1135at 1297.460 kb on + strand, within Echvi_1135at 1297.505 kb on - strandat 1297.528 kb on + strandat 1297.528 kb on + strandat 1297.529 kb on - strandat 1297.534 kb on + strandat 1297.535 kb on - strandat 1297.559 kb on + strandat 1297.560 kb on - strandat 1297.560 kb on - strandat 1297.568 kb on + strandat 1297.568 kb on + strandat 1297.568 kb on + strandat 1297.576 kb on + strandat 1297.577 kb on - strandat 1297.577 kb on - strandat 1297.589 kb on + strandat 1297.590 kb on - strandat 1297.590 kb on - strandat 1297.630 kb on - strandat 1297.667 kb on + strandat 1297.727 kb on - strand, within Echvi_1136

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
remove
1,295,014 + Echvi_1132 0.34 -1.6
1,295,015 - Echvi_1132 0.34 -0.7
1,295,113 - Echvi_1132 0.66 +0.0
1,295,140 + Echvi_1132 0.74 -0.4
1,295,141 - Echvi_1132 0.75 +0.2
1,295,141 - Echvi_1132 0.75 -1.0
1,295,141 - Echvi_1132 0.75 -1.0
1,295,141 - Echvi_1132 0.75 -0.7
1,295,141 - Echvi_1132 0.75 +0.4
1,295,141 - Echvi_1132 0.75 -0.8
1,295,141 - Echvi_1132 0.75 +0.4
1,295,141 - Echvi_1132 0.75 -0.0
1,295,141 - Echvi_1132 0.75 -0.4
1,295,160 + Echvi_1132 0.81 +0.5
1,295,166 - Echvi_1132 0.83 -0.7
1,295,381 + Echvi_1133 0.19 +0.1
1,295,382 - Echvi_1133 0.20 -0.3
1,295,491 + Echvi_1133 0.41 -0.9
1,295,571 - Echvi_1133 0.57 -1.4
1,295,579 + Echvi_1133 0.58 -2.0
1,295,580 - Echvi_1133 0.58 -0.0
1,295,599 - Echvi_1133 0.62 -0.3
1,295,603 - Echvi_1133 0.63 +0.4
1,295,603 - Echvi_1133 0.63 -0.4
1,295,661 + Echvi_1133 0.74 +0.6
1,295,661 + Echvi_1133 0.74 -1.3
1,295,743 + -0.6
1,295,743 + +0.5
1,295,744 - -0.5
1,295,744 - +0.6
1,295,757 - -0.1
1,295,776 - -0.2
1,295,776 - -0.5
1,295,797 - +0.6
1,295,808 - +0.8
1,295,808 - +0.6
1,295,834 + -1.2
1,295,834 + -0.6
1,295,834 + -0.6
1,295,947 + -0.8
1,295,999 + -0.3
1,296,020 + +0.0
1,296,090 + Echvi_1134 0.10 +0.4
1,296,093 + Echvi_1134 0.11 -0.4
1,296,093 + Echvi_1134 0.11 +0.9
1,296,098 + Echvi_1134 0.11 +0.0
1,296,120 + Echvi_1134 0.14 +1.0
1,296,120 + Echvi_1134 0.14 +0.8
1,296,133 + Echvi_1134 0.16 +0.1
1,296,133 + Echvi_1134 0.16 -0.8
1,296,211 + Echvi_1134 0.26 +1.6
1,296,212 - Echvi_1134 0.26 +0.4
1,296,213 + Echvi_1134 0.27 +1.4
1,296,213 + Echvi_1134 0.27 -0.1
1,296,213 + Echvi_1134 0.27 -0.4
1,296,218 + Echvi_1134 0.27 -0.6
1,296,218 + Echvi_1134 0.27 -0.5
1,296,219 - Echvi_1134 0.27 -0.4
1,296,219 - Echvi_1134 0.27 +0.1
1,296,225 + Echvi_1134 0.28 +0.5
1,296,333 + Echvi_1134 0.42 +0.6
1,296,333 + Echvi_1134 0.42 -0.0
1,296,333 + Echvi_1134 0.42 +0.1
1,296,333 + Echvi_1134 0.42 +1.4
1,296,334 - Echvi_1134 0.43 -1.8
1,296,334 - Echvi_1134 0.43 -1.8
1,296,359 + Echvi_1134 0.46 -1.4
1,296,360 - Echvi_1134 0.46 -0.9
1,296,360 - Echvi_1134 0.46 +0.3
1,296,417 + Echvi_1134 0.54 -0.2
1,296,470 + Echvi_1134 0.61 +0.2
1,296,470 + Echvi_1134 0.61 -1.2
1,296,470 + Echvi_1134 0.61 -0.7
1,296,470 + Echvi_1134 0.61 -0.2
1,296,470 + Echvi_1134 0.61 +0.1
1,296,470 + Echvi_1134 0.61 -0.1
1,296,471 - Echvi_1134 0.61 -1.7
1,296,471 - Echvi_1134 0.61 +0.7
1,296,483 + Echvi_1134 0.62 -0.6
1,296,544 - Echvi_1134 0.71 +1.5
1,296,544 - Echvi_1134 0.71 -0.2
1,296,558 + Echvi_1134 0.72 +0.0
1,296,558 + Echvi_1134 0.72 +0.9
1,296,614 + Echvi_1134 0.80 +0.1
1,296,646 + Echvi_1134 0.84 -0.4
1,296,646 + Echvi_1134 0.84 -0.7
1,296,646 + Echvi_1134 0.84 -1.8
1,296,647 - Echvi_1134 0.84 -0.4
1,296,647 - Echvi_1134 0.84 +1.2
1,296,647 - Echvi_1134 0.84 +0.4
1,296,647 - Echvi_1134 0.84 -0.2
1,296,648 + Echvi_1134 0.84 -0.2
1,296,648 + Echvi_1134 0.84 +0.2
1,296,649 - Echvi_1134 0.84 -0.4
1,296,649 - Echvi_1134 0.84 +1.5
1,296,649 - Echvi_1134 0.84 -0.7
1,296,649 - Echvi_1134 0.84 +0.6
1,296,649 - Echvi_1134 0.84 +0.3
1,296,652 + Echvi_1134 0.85 -0.9
1,296,653 - Echvi_1134 0.85 -0.0
1,296,653 - Echvi_1134 0.85 +0.8
1,296,653 - Echvi_1134 0.85 +0.1
1,296,653 - Echvi_1134 0.85 -1.3
1,296,776 + -0.1
1,296,776 + +0.2
1,296,777 - -0.3
1,296,777 - -0.3
1,296,782 + -0.2
1,296,812 + +0.7
1,296,812 + +0.0
1,296,813 - +0.7
1,296,813 - -0.2
1,296,813 - -0.3
1,296,842 + +1.3
1,296,866 - Echvi_1135 0.11 +1.4
1,296,902 + Echvi_1135 0.16 -2.4
1,296,902 + Echvi_1135 0.16 -0.4
1,296,903 - Echvi_1135 0.16 +0.1
1,296,959 + Echvi_1135 0.23 +0.7
1,296,959 + Echvi_1135 0.23 -1.2
1,296,959 + Echvi_1135 0.23 -0.0
1,296,968 + Echvi_1135 0.24 -0.1
1,297,183 + Echvi_1135 0.53 -0.5
1,297,206 + Echvi_1135 0.56 +1.5
1,297,214 + Echvi_1135 0.57 +0.5
1,297,214 + Echvi_1135 0.57 +1.4
1,297,251 + Echvi_1135 0.61 +1.6
1,297,251 + Echvi_1135 0.61 -0.0
1,297,253 + Echvi_1135 0.62 -1.5
1,297,253 + Echvi_1135 0.62 -0.7
1,297,253 + Echvi_1135 0.62 +0.8
1,297,254 - Echvi_1135 0.62 +0.2
1,297,254 - Echvi_1135 0.62 +0.6
1,297,254 - Echvi_1135 0.62 -0.6
1,297,257 + Echvi_1135 0.62 +1.0
1,297,257 + Echvi_1135 0.62 -0.0
1,297,258 - Echvi_1135 0.62 +0.7
1,297,258 - +1.0
1,297,258 - Echvi_1135 0.62 -1.0
1,297,260 + Echvi_1135 0.63 +3.0
1,297,260 + Echvi_1135 0.63 +0.8
1,297,261 - Echvi_1135 0.63 +0.0
1,297,317 + Echvi_1135 0.70 +1.0
1,297,317 + Echvi_1135 0.70 +0.1
1,297,317 + Echvi_1135 0.70 +1.0
1,297,317 + Echvi_1135 0.70 +1.0
1,297,317 + Echvi_1135 0.70 -1.6
1,297,318 - Echvi_1135 0.70 -0.2
1,297,318 - Echvi_1135 0.70 +0.6
1,297,318 - Echvi_1135 0.70 +0.4
1,297,318 - Echvi_1135 0.70 -0.6
1,297,318 - Echvi_1135 0.70 +1.2
1,297,318 - Echvi_1135 0.70 +1.2
1,297,330 + Echvi_1135 0.72 +1.0
1,297,330 + Echvi_1135 0.72 +0.4
1,297,330 + Echvi_1135 0.72 -1.0
1,297,330 + Echvi_1135 0.72 +0.1
1,297,331 - Echvi_1135 0.72 +0.7
1,297,331 - Echvi_1135 0.72 +1.5
1,297,337 + Echvi_1135 0.73 +0.3
1,297,337 + Echvi_1135 0.73 -0.6
1,297,337 + Echvi_1135 0.73 +0.0
1,297,338 - Echvi_1135 0.73 -1.5
1,297,339 + Echvi_1135 0.73 +1.7
1,297,339 + Echvi_1135 0.73 +1.0
1,297,339 + Echvi_1135 0.73 +0.1
1,297,339 + Echvi_1135 0.73 +0.3
1,297,339 + Echvi_1135 0.73 +0.3
1,297,340 - Echvi_1135 0.73 -1.5
1,297,340 - Echvi_1135 0.73 -0.1
1,297,340 - Echvi_1135 0.73 -0.3
1,297,359 + Echvi_1135 0.76 -0.4
1,297,403 + Echvi_1135 0.81 -0.6
1,297,403 + Echvi_1135 0.81 +0.7
1,297,460 + Echvi_1135 0.89 +1.3
1,297,460 + Echvi_1135 0.89 +0.6
1,297,460 + Echvi_1135 0.89 -0.0
1,297,505 - -0.8
1,297,528 + +2.0
1,297,528 + -0.8
1,297,529 - -0.6
1,297,534 + +0.2
1,297,535 - +0.6
1,297,559 + +1.4
1,297,560 - -0.0
1,297,560 - +1.0
1,297,568 + +0.6
1,297,568 + -0.0
1,297,568 + -1.5
1,297,576 + +0.1
1,297,577 - +0.4
1,297,577 - +0.2
1,297,589 + -0.6
1,297,590 - +0.7
1,297,590 - +0.5
1,297,630 - -2.5
1,297,667 + +0.6
1,297,727 - Echvi_1136 0.15 +3.0

Or see this region's nucleotide sequence