Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0646

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0644 and Echvi_0645 are separated by 6 nucleotidesEchvi_0645 and Echvi_0646 are separated by 22 nucleotidesEchvi_0646 and Echvi_0647 are separated by 181 nucleotides Echvi_0644: Echvi_0644 - hypothetical protein, at 728,173 to 728,682 _0644 Echvi_0645: Echvi_0645 - Uncharacterized protein conserved in bacteria, at 728,689 to 729,291 _0645 Echvi_0646: Echvi_0646 - Cyanate permease, at 729,314 to 730,492 _0646 Echvi_0647: Echvi_0647 - ferrochelatase, at 730,674 to 731,717 _0647 Position (kb) 729 730 731Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 728.340 kb on + strand, within Echvi_0644at 728.481 kb on + strand, within Echvi_0644at 728.481 kb on + strand, within Echvi_0644at 728.482 kb on - strand, within Echvi_0644at 728.482 kb on - strand, within Echvi_0644at 728.483 kb on + strand, within Echvi_0644at 728.576 kb on - strand, within Echvi_0644at 728.616 kb on + strand, within Echvi_0644at 728.617 kb on - strand, within Echvi_0644at 728.682 kb on + strandat 728.721 kb on + strandat 728.748 kb on + strandat 728.748 kb on + strandat 728.749 kb on - strandat 728.749 kb on - strandat 728.790 kb on - strand, within Echvi_0645at 728.859 kb on + strand, within Echvi_0645at 728.860 kb on - strand, within Echvi_0645at 728.860 kb on - strand, within Echvi_0645at 728.866 kb on + strand, within Echvi_0645at 728.867 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 729.019 kb on + strand, within Echvi_0645at 729.020 kb on - strand, within Echvi_0645at 729.023 kb on + strand, within Echvi_0645at 729.024 kb on - strand, within Echvi_0645at 729.060 kb on - strand, within Echvi_0645at 729.113 kb on - strand, within Echvi_0645at 729.134 kb on - strand, within Echvi_0645at 729.242 kb on + strandat 729.243 kb on - strandat 729.243 kb on - strandat 729.243 kb on - strandat 729.243 kb on - strandat 729.246 kb on + strandat 729.246 kb on + strandat 729.247 kb on - strandat 729.247 kb on - strandat 729.247 kb on - strandat 729.247 kb on - strandat 729.252 kb on + strandat 729.252 kb on + strandat 729.253 kb on - strandat 729.371 kb on + strandat 729.371 kb on + strandat 729.372 kb on - strandat 729.372 kb on - strandat 729.399 kb on + strandat 729.456 kb on + strand, within Echvi_0646at 729.456 kb on + strand, within Echvi_0646at 729.457 kb on - strand, within Echvi_0646at 729.457 kb on - strand, within Echvi_0646at 729.457 kb on - strand, within Echvi_0646at 729.457 kb on - strand, within Echvi_0646at 729.457 kb on - strand, within Echvi_0646at 729.459 kb on + strand, within Echvi_0646at 729.459 kb on + strand, within Echvi_0646at 729.460 kb on - strand, within Echvi_0646at 729.583 kb on + strand, within Echvi_0646at 729.599 kb on - strand, within Echvi_0646at 729.599 kb on - strand, within Echvi_0646at 729.599 kb on - strand, within Echvi_0646at 729.599 kb on - strand, within Echvi_0646at 729.599 kb on - strand, within Echvi_0646at 729.633 kb on + strand, within Echvi_0646at 729.634 kb on - strand, within Echvi_0646at 729.700 kb on + strand, within Echvi_0646at 729.700 kb on + strand, within Echvi_0646at 729.743 kb on + strand, within Echvi_0646at 729.773 kb on - strand, within Echvi_0646at 729.820 kb on + strand, within Echvi_0646at 729.821 kb on - strand, within Echvi_0646at 729.821 kb on - strand, within Echvi_0646at 729.827 kb on + strand, within Echvi_0646at 729.827 kb on + strand, within Echvi_0646at 729.827 kb on + strand, within Echvi_0646at 729.828 kb on - strand, within Echvi_0646at 729.916 kb on + strand, within Echvi_0646at 730.027 kb on + strand, within Echvi_0646at 730.040 kb on + strand, within Echvi_0646at 730.041 kb on - strand, within Echvi_0646at 730.071 kb on + strand, within Echvi_0646at 730.071 kb on + strand, within Echvi_0646at 730.071 kb on + strand, within Echvi_0646at 730.072 kb on - strand, within Echvi_0646at 730.084 kb on + strand, within Echvi_0646at 730.085 kb on - strand, within Echvi_0646at 730.092 kb on - strand, within Echvi_0646at 730.097 kb on - strand, within Echvi_0646at 730.133 kb on + strand, within Echvi_0646at 730.134 kb on - strand, within Echvi_0646at 730.179 kb on + strand, within Echvi_0646at 730.180 kb on - strand, within Echvi_0646at 730.210 kb on + strand, within Echvi_0646at 730.210 kb on + strand, within Echvi_0646at 730.210 kb on + strand, within Echvi_0646at 730.210 kb on + strand, within Echvi_0646at 730.212 kb on + strand, within Echvi_0646at 730.212 kb on + strand, within Echvi_0646at 730.212 kb on + strand, within Echvi_0646at 730.212 kb on + strand, within Echvi_0646at 730.212 kb on + strand, within Echvi_0646at 730.212 kb on + strand, within Echvi_0646at 730.213 kb on - strand, within Echvi_0646at 730.213 kb on - strand, within Echvi_0646at 730.214 kb on + strand, within Echvi_0646at 730.256 kb on + strand, within Echvi_0646at 730.256 kb on + strand, within Echvi_0646at 730.256 kb on + strand, within Echvi_0646at 730.257 kb on - strand, within Echvi_0646at 730.394 kb on + strandat 730.395 kb on - strandat 730.463 kb on + strandat 730.464 kb on - strandat 730.522 kb on - strandat 730.525 kb on + strandat 730.525 kb on + strandat 730.525 kb on + strandat 730.525 kb on + strandat 730.525 kb on + strandat 730.526 kb on - strandat 730.526 kb on - strandat 730.610 kb on + strandat 730.611 kb on - strandat 730.617 kb on + strandat 730.617 kb on + strandat 730.623 kb on - strandat 730.623 kb on - strandat 730.666 kb on + strandat 730.667 kb on - strandat 730.667 kb on - strandat 730.670 kb on + strandat 730.670 kb on + strandat 730.670 kb on + strandat 730.670 kb on + strandat 730.670 kb on + strandat 730.670 kb on + strandat 730.670 kb on + strandat 730.670 kb on + strandat 730.671 kb on - strandat 730.671 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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728,340 + Echvi_0644 0.33 +0.9
728,481 + Echvi_0644 0.60 -0.2
728,481 + Echvi_0644 0.60 -0.1
728,482 - Echvi_0644 0.61 -0.5
728,482 - Echvi_0644 0.61 -0.9
728,483 + Echvi_0644 0.61 -0.7
728,576 - Echvi_0644 0.79 -0.5
728,616 + Echvi_0644 0.87 -0.1
728,617 - Echvi_0644 0.87 -0.0
728,682 + -0.0
728,721 + -0.4
728,748 + +1.3
728,748 + +0.6
728,749 - -1.1
728,749 - -1.1
728,790 - Echvi_0645 0.17 +0.6
728,859 + Echvi_0645 0.28 +0.7
728,860 - Echvi_0645 0.28 +0.9
728,860 - Echvi_0645 0.28 +1.6
728,866 + Echvi_0645 0.29 +0.7
728,867 - Echvi_0645 0.30 -1.1
728,934 - Echvi_0645 0.41 -0.3
728,934 - Echvi_0645 0.41 +0.2
728,934 - Echvi_0645 0.41 -1.8
728,934 - Echvi_0645 0.41 +0.3
728,934 - Echvi_0645 0.41 +1.6
728,934 - Echvi_0645 0.41 -1.1
729,019 + Echvi_0645 0.55 -1.6
729,020 - Echvi_0645 0.55 -0.9
729,023 + Echvi_0645 0.55 +0.1
729,024 - Echvi_0645 0.56 -2.3
729,060 - Echvi_0645 0.62 -1.3
729,113 - Echvi_0645 0.70 +1.0
729,134 - Echvi_0645 0.74 -0.0
729,242 + -1.2
729,243 - -0.5
729,243 - -0.0
729,243 - -1.4
729,243 - -0.9
729,246 + +0.2
729,246 + -0.7
729,247 - -0.6
729,247 - +0.3
729,247 - -0.7
729,247 - +0.4
729,252 + +1.2
729,252 + -0.2
729,253 - +3.2
729,371 + -0.5
729,371 + -1.0
729,372 - +0.5
729,372 - +0.8
729,399 + -1.7
729,456 + Echvi_0646 0.12 +0.3
729,456 + Echvi_0646 0.12 +0.4
729,457 - Echvi_0646 0.12 -1.0
729,457 - Echvi_0646 0.12 -0.4
729,457 - Echvi_0646 0.12 +0.6
729,457 - Echvi_0646 0.12 -1.4
729,457 - Echvi_0646 0.12 -0.6
729,459 + Echvi_0646 0.12 +1.3
729,459 + Echvi_0646 0.12 -0.8
729,460 - Echvi_0646 0.12 -1.7
729,583 + Echvi_0646 0.23 +0.4
729,599 - Echvi_0646 0.24 -0.9
729,599 - Echvi_0646 0.24 +0.2
729,599 - Echvi_0646 0.24 +0.9
729,599 - Echvi_0646 0.24 -3.1
729,599 - Echvi_0646 0.24 -1.3
729,633 + Echvi_0646 0.27 -0.8
729,634 - Echvi_0646 0.27 +0.2
729,700 + Echvi_0646 0.33 -0.6
729,700 + Echvi_0646 0.33 -0.7
729,743 + Echvi_0646 0.36 -1.0
729,773 - Echvi_0646 0.39 -1.6
729,820 + Echvi_0646 0.43 +2.1
729,821 - Echvi_0646 0.43 -1.5
729,821 - Echvi_0646 0.43 -1.7
729,827 + Echvi_0646 0.44 -1.1
729,827 + Echvi_0646 0.44 -0.7
729,827 + Echvi_0646 0.44 -2.4
729,828 - Echvi_0646 0.44 -0.7
729,916 + Echvi_0646 0.51 -0.6
730,027 + Echvi_0646 0.60 -0.5
730,040 + Echvi_0646 0.62 -0.1
730,041 - Echvi_0646 0.62 -1.3
730,071 + Echvi_0646 0.64 +0.1
730,071 + Echvi_0646 0.64 +0.3
730,071 + Echvi_0646 0.64 +0.3
730,072 - Echvi_0646 0.64 -2.1
730,084 + Echvi_0646 0.65 -0.6
730,085 - Echvi_0646 0.65 +0.1
730,092 - Echvi_0646 0.66 -0.1
730,097 - Echvi_0646 0.66 +0.3
730,133 + Echvi_0646 0.69 +0.1
730,134 - Echvi_0646 0.70 -0.6
730,179 + Echvi_0646 0.73 -0.4
730,180 - Echvi_0646 0.73 +0.1
730,210 + Echvi_0646 0.76 -0.3
730,210 + Echvi_0646 0.76 +1.3
730,210 + Echvi_0646 0.76 -0.1
730,210 + Echvi_0646 0.76 -0.0
730,212 + Echvi_0646 0.76 -0.7
730,212 + Echvi_0646 0.76 -0.9
730,212 + Echvi_0646 0.76 -0.5
730,212 + Echvi_0646 0.76 +0.2
730,212 + Echvi_0646 0.76 -0.5
730,212 + Echvi_0646 0.76 -0.5
730,213 - Echvi_0646 0.76 -0.5
730,213 - Echvi_0646 0.76 -1.0
730,214 + Echvi_0646 0.76 -0.2
730,256 + Echvi_0646 0.80 +0.1
730,256 + Echvi_0646 0.80 -0.6
730,256 + Echvi_0646 0.80 -0.6
730,257 - Echvi_0646 0.80 -0.1
730,394 + -0.8
730,395 - -0.9
730,463 + +1.6
730,464 - +0.4
730,522 - -0.3
730,525 + -0.4
730,525 + -0.1
730,525 + -0.0
730,525 + -0.6
730,525 + -0.5
730,526 - -0.4
730,526 - -1.4
730,610 + +0.4
730,611 - -0.3
730,617 + +1.5
730,617 + +1.4
730,623 - -0.1
730,623 - -0.3
730,666 + +0.9
730,667 - -0.3
730,667 - -0.6
730,670 + -1.6
730,670 + -0.5
730,670 + -1.8
730,670 + +0.1
730,670 + +0.2
730,670 + +1.1
730,670 + +0.9
730,670 + +1.0
730,671 - -0.8
730,671 - +0.1

Or see this region's nucleotide sequence