Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0584 and Echvi_0585 are separated by 79 nucleotides Echvi_0585 and Echvi_0586 are separated by 159 nucleotides Echvi_0586 and Echvi_0587 are separated by 59 nucleotides
Echvi_0584: Echvi_0584 - peptide chain release factor 3, at 661,202 to 662,815
_0584
Echvi_0585: Echvi_0585 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 662,895 to 664,133
_0585
Echvi_0586: Echvi_0586 - DNA-binding ferritin-like protein (oxidative damage protectant), at 664,293 to 664,763
_0586
Echvi_0587: Echvi_0587 - ABC-type Na+ efflux pump, permease component, at 664,823 to 666,133
_0587
Position (kb) 662
663
664
665 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 661.910 kb on - strand, within Echvi_0584 at 661.997 kb on + strand, within Echvi_0584 at 661.998 kb on - strand, within Echvi_0584 at 662.055 kb on + strand, within Echvi_0584 at 662.055 kb on + strand, within Echvi_0584 at 662.055 kb on + strand, within Echvi_0584 at 662.125 kb on + strand at 662.126 kb on - strand, within Echvi_0584 at 662.126 kb on - strand, within Echvi_0584 at 662.236 kb on - strand, within Echvi_0584 at 662.243 kb on - strand, within Echvi_0584 at 662.299 kb on + strand, within Echvi_0584 at 662.370 kb on - strand, within Echvi_0584 at 662.497 kb on + strand, within Echvi_0584 at 662.498 kb on - strand, within Echvi_0584 at 662.498 kb on - strand, within Echvi_0584 at 662.545 kb on + strand, within Echvi_0584 at 662.546 kb on - strand, within Echvi_0584 at 662.556 kb on + strand, within Echvi_0584 at 662.556 kb on + strand, within Echvi_0584 at 662.557 kb on - strand, within Echvi_0584 at 662.710 kb on + strand at 662.710 kb on + strand at 662.711 kb on - strand at 662.800 kb on + strand at 662.820 kb on - strand at 662.827 kb on + strand at 663.018 kb on - strand at 663.114 kb on - strand, within Echvi_0585 at 663.144 kb on + strand, within Echvi_0585 at 663.145 kb on - strand, within Echvi_0585 at 663.182 kb on + strand, within Echvi_0585 at 663.182 kb on + strand, within Echvi_0585 at 663.186 kb on - strand, within Echvi_0585 at 663.192 kb on + strand, within Echvi_0585 at 663.339 kb on + strand, within Echvi_0585 at 663.339 kb on + strand, within Echvi_0585 at 663.370 kb on + strand, within Echvi_0585 at 663.371 kb on - strand, within Echvi_0585 at 663.413 kb on + strand, within Echvi_0585 at 663.414 kb on - strand, within Echvi_0585 at 663.546 kb on + strand, within Echvi_0585 at 663.547 kb on - strand, within Echvi_0585 at 663.569 kb on + strand, within Echvi_0585 at 663.569 kb on + strand, within Echvi_0585 at 663.570 kb on - strand, within Echvi_0585 at 663.570 kb on - strand, within Echvi_0585 at 663.570 kb on - strand, within Echvi_0585 at 663.667 kb on + strand, within Echvi_0585 at 663.667 kb on + strand, within Echvi_0585 at 663.667 kb on + strand, within Echvi_0585 at 663.667 kb on + strand, within Echvi_0585 at 663.668 kb on - strand, within Echvi_0585 at 663.677 kb on - strand, within Echvi_0585 at 663.709 kb on + strand, within Echvi_0585 at 663.710 kb on - strand, within Echvi_0585 at 663.712 kb on + strand, within Echvi_0585 at 663.712 kb on + strand, within Echvi_0585 at 663.748 kb on + strand, within Echvi_0585 at 663.792 kb on + strand, within Echvi_0585 at 663.824 kb on + strand, within Echvi_0585 at 663.825 kb on - strand, within Echvi_0585 at 663.935 kb on + strand, within Echvi_0585 at 663.935 kb on + strand, within Echvi_0585 at 663.935 kb on + strand, within Echvi_0585 at 663.946 kb on + strand, within Echvi_0585 at 663.946 kb on + strand, within Echvi_0585 at 663.947 kb on - strand, within Echvi_0585 at 663.947 kb on - strand, within Echvi_0585 at 663.965 kb on - strand, within Echvi_0585 at 663.971 kb on + strand, within Echvi_0585 at 664.014 kb on - strand at 664.014 kb on - strand at 664.019 kb on + strand at 664.019 kb on + strand at 664.019 kb on + strand at 664.020 kb on - strand at 664.021 kb on + strand at 664.021 kb on + strand at 664.022 kb on - strand at 664.024 kb on + strand at 664.024 kb on + strand at 664.024 kb on + strand at 664.024 kb on + strand at 664.025 kb on - strand at 664.025 kb on - strand at 664.029 kb on - strand at 664.038 kb on - strand at 664.038 kb on - strand at 664.040 kb on + strand at 664.075 kb on - strand at 664.093 kb on + strand at 664.095 kb on + strand at 664.095 kb on + strand at 664.096 kb on - strand at 664.134 kb on + strand at 664.135 kb on - strand at 664.163 kb on - strand at 664.172 kb on + strand at 664.176 kb on + strand at 664.176 kb on + strand at 664.176 kb on + strand at 664.177 kb on - strand at 664.177 kb on - strand at 664.177 kb on - strand at 664.177 kb on - strand at 664.177 kb on - strand at 664.178 kb on + strand at 664.196 kb on - strand at 664.196 kb on - strand at 664.196 kb on - strand at 664.199 kb on + strand at 664.199 kb on + strand at 664.200 kb on - strand at 664.203 kb on - strand at 664.203 kb on - strand at 664.219 kb on - strand at 664.287 kb on + strand at 664.289 kb on + strand at 664.289 kb on + strand at 664.290 kb on - strand at 664.301 kb on + strand at 664.328 kb on + strand at 664.380 kb on + strand, within Echvi_0586 at 664.384 kb on - strand, within Echvi_0586 at 664.461 kb on + strand, within Echvi_0586 at 664.509 kb on - strand, within Echvi_0586 at 664.545 kb on + strand, within Echvi_0586 at 664.545 kb on + strand, within Echvi_0586 at 664.711 kb on - strand, within Echvi_0586 at 664.711 kb on - strand, within Echvi_0586 at 664.713 kb on - strand, within Echvi_0586 at 664.757 kb on + strand at 664.758 kb on - strand at 664.758 kb on - strand at 664.819 kb on + strand at 664.819 kb on + strand at 664.824 kb on + strand at 664.824 kb on + strand at 664.860 kb on + strand at 664.888 kb on + strand at 664.901 kb on + strand at 664.901 kb on + strand at 664.902 kb on - strand at 665.021 kb on - strand, within Echvi_0587 at 665.021 kb on - strand, within Echvi_0587 at 665.080 kb on + strand, within Echvi_0587
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 661,910 - Echvi_0584 0.44 -1.1 661,997 + Echvi_0584 0.49 -0.7 661,998 - Echvi_0584 0.49 +1.8 662,055 + Echvi_0584 0.53 -2.0 662,055 + Echvi_0584 0.53 -0.7 662,055 + Echvi_0584 0.53 +1.8 662,125 + +0.8 662,126 - Echvi_0584 0.57 -0.2 662,126 - Echvi_0584 0.57 +0.5 662,236 - Echvi_0584 0.64 -0.5 662,243 - Echvi_0584 0.64 -1.7 662,299 + Echvi_0584 0.68 +0.3 662,370 - Echvi_0584 0.72 -1.4 662,497 + Echvi_0584 0.80 -0.2 662,498 - Echvi_0584 0.80 -1.5 662,498 - Echvi_0584 0.80 -1.2 662,545 + Echvi_0584 0.83 -0.6 662,546 - Echvi_0584 0.83 -1.7 662,556 + Echvi_0584 0.84 -0.3 662,556 + Echvi_0584 0.84 -1.0 662,557 - Echvi_0584 0.84 +1.4 662,710 + -0.3 662,710 + -0.0 662,711 - -0.7 662,800 + -0.7 662,820 - -0.7 662,827 + +0.1 663,018 - -0.9 663,114 - Echvi_0585 0.18 -0.2 663,144 + Echvi_0585 0.20 +0.3 663,145 - Echvi_0585 0.20 +0.8 663,182 + Echvi_0585 0.23 -0.6 663,182 + Echvi_0585 0.23 -0.7 663,186 - Echvi_0585 0.23 -0.6 663,192 + Echvi_0585 0.24 -0.2 663,339 + Echvi_0585 0.36 +0.5 663,339 + Echvi_0585 0.36 -2.5 663,370 + Echvi_0585 0.38 -0.7 663,371 - Echvi_0585 0.38 -1.0 663,413 + Echvi_0585 0.42 +0.6 663,414 - Echvi_0585 0.42 +0.5 663,546 + Echvi_0585 0.53 -0.5 663,547 - Echvi_0585 0.53 +0.6 663,569 + Echvi_0585 0.54 +0.7 663,569 + Echvi_0585 0.54 +1.2 663,570 - Echvi_0585 0.54 -0.9 663,570 - Echvi_0585 0.54 -0.0 663,570 - Echvi_0585 0.54 +1.4 663,667 + Echvi_0585 0.62 -1.0 663,667 + Echvi_0585 0.62 +0.4 663,667 + Echvi_0585 0.62 -0.1 663,667 + Echvi_0585 0.62 -0.1 663,668 - Echvi_0585 0.62 +1.1 663,677 - Echvi_0585 0.63 -1.0 663,709 + Echvi_0585 0.66 +1.2 663,710 - Echvi_0585 0.66 -0.1 663,712 + Echvi_0585 0.66 +1.3 663,712 + Echvi_0585 0.66 +0.0 663,748 + Echvi_0585 0.69 +1.1 663,792 + Echvi_0585 0.72 -0.4 663,824 + Echvi_0585 0.75 +0.8 663,825 - Echvi_0585 0.75 -0.6 663,935 + Echvi_0585 0.84 +0.3 663,935 + Echvi_0585 0.84 +2.3 663,935 + Echvi_0585 0.84 +0.9 663,946 + Echvi_0585 0.85 +2.3 663,946 + Echvi_0585 0.85 +0.4 663,947 - Echvi_0585 0.85 -0.2 663,947 - Echvi_0585 0.85 -0.7 663,965 - Echvi_0585 0.86 +0.0 663,971 + Echvi_0585 0.87 +0.4 664,014 - -0.7 664,014 - +0.3 664,019 + +0.8 664,019 + +1.7 664,019 + +0.3 664,020 - -1.5 664,021 + +2.0 664,021 + +1.9 664,022 - -0.4 664,024 + +0.9 664,024 + +0.5 664,024 + +1.6 664,024 + +1.0 664,025 - -0.2 664,025 - +0.4 664,029 - -0.5 664,038 - -0.4 664,038 - -0.6 664,040 + +2.7 664,075 - -1.4 664,093 + +0.9 664,095 + +1.9 664,095 + +1.4 664,096 - -1.0 664,134 + +1.4 664,135 - +0.0 664,163 - +0.5 664,172 + +2.2 664,176 + +1.4 664,176 + +1.3 664,176 + +1.0 664,177 - -1.2 664,177 - -0.2 664,177 - -1.2 664,177 - -1.0 664,177 - +0.5 664,178 + +2.5 664,196 - -2.3 664,196 - +0.6 664,196 - -0.0 664,199 + +0.7 664,199 + +1.1 664,200 - +0.3 664,203 - -2.8 664,203 - -0.5 664,219 - -0.7 664,287 + -3.0 664,289 + -1.2 664,289 + -2.1 664,290 - -3.2 664,301 + -1.7 664,328 + -1.2 664,380 + Echvi_0586 0.18 -3.3 664,384 - Echvi_0586 0.19 -2.2 664,461 + Echvi_0586 0.36 -2.2 664,509 - Echvi_0586 0.46 -1.5 664,545 + Echvi_0586 0.54 -2.9 664,545 + Echvi_0586 0.54 -1.0 664,711 - Echvi_0586 0.89 -3.4 664,711 - Echvi_0586 0.89 -3.7 664,713 - Echvi_0586 0.89 -2.4 664,757 + -2.2 664,758 - -2.6 664,758 - -2.5 664,819 + +0.1 664,819 + +0.4 664,824 + +0.0 664,824 + +0.3 664,860 + +0.3 664,888 + +0.1 664,901 + +0.2 664,901 + -0.9 664,902 - +0.5 665,021 - Echvi_0587 0.15 -0.8 665,021 - Echvi_0587 0.15 -0.3 665,080 + Echvi_0587 0.20 +0.3
Or see this region's nucleotide sequence