Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0409

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0408 and Echvi_0409 are separated by 34 nucleotidesEchvi_0409 and Echvi_0410 are separated by 224 nucleotides Echvi_0408: Echvi_0408 - TonB-linked outer membrane protein, SusC/RagA family, at 444,946 to 448,113 _0408 Echvi_0409: Echvi_0409 - Sugar phosphate permease, at 448,148 to 449,395 _0409 Echvi_0410: Echvi_0410 - Transcriptional regulators, at 449,620 to 450,393 _0410 Position (kb) 448 449 450Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 447.168 kb on + strand, within Echvi_0408at 447.169 kb on - strand, within Echvi_0408at 447.301 kb on + strand, within Echvi_0408at 447.302 kb on - strand, within Echvi_0408at 447.359 kb on + strand, within Echvi_0408at 447.363 kb on + strand, within Echvi_0408at 447.363 kb on + strand, within Echvi_0408at 447.363 kb on + strand, within Echvi_0408at 447.364 kb on - strand, within Echvi_0408at 447.364 kb on - strand, within Echvi_0408at 447.364 kb on - strand, within Echvi_0408at 447.364 kb on - strand, within Echvi_0408at 447.364 kb on - strand, within Echvi_0408at 447.364 kb on - strand, within Echvi_0408at 447.368 kb on + strand, within Echvi_0408at 447.369 kb on - strand, within Echvi_0408at 447.408 kb on + strand, within Echvi_0408at 447.411 kb on + strand, within Echvi_0408at 447.411 kb on + strand, within Echvi_0408at 447.418 kb on - strand, within Echvi_0408at 447.488 kb on - strand, within Echvi_0408at 447.488 kb on - strand, within Echvi_0408at 447.489 kb on + strand, within Echvi_0408at 447.489 kb on + strand, within Echvi_0408at 447.511 kb on - strand, within Echvi_0408at 447.511 kb on - strand, within Echvi_0408at 447.545 kb on - strand, within Echvi_0408at 447.548 kb on + strand, within Echvi_0408at 447.548 kb on + strand, within Echvi_0408at 447.549 kb on - strand, within Echvi_0408at 447.596 kb on - strand, within Echvi_0408at 447.596 kb on - strand, within Echvi_0408at 447.596 kb on - strand, within Echvi_0408at 447.597 kb on + strand, within Echvi_0408at 447.597 kb on + strand, within Echvi_0408at 447.597 kb on + strand, within Echvi_0408at 447.604 kb on - strand, within Echvi_0408at 447.697 kb on + strand, within Echvi_0408at 447.758 kb on + strand, within Echvi_0408at 447.763 kb on + strand, within Echvi_0408at 447.763 kb on + strand, within Echvi_0408at 447.769 kb on + strand, within Echvi_0408at 447.770 kb on - strand, within Echvi_0408at 447.773 kb on - strand, within Echvi_0408at 447.773 kb on - strand, within Echvi_0408at 447.773 kb on - strand, within Echvi_0408at 447.780 kb on + strand, within Echvi_0408at 447.781 kb on - strand, within Echvi_0408at 447.808 kb on + strandat 447.808 kb on + strandat 447.809 kb on - strandat 447.809 kb on - strandat 447.810 kb on + strandat 447.859 kb on + strandat 447.860 kb on - strandat 447.862 kb on - strandat 447.872 kb on - strandat 447.873 kb on + strandat 447.873 kb on + strandat 447.888 kb on + strandat 447.889 kb on - strandat 447.901 kb on + strandat 447.901 kb on + strandat 447.902 kb on - strandat 447.903 kb on + strandat 447.908 kb on + strandat 447.909 kb on - strandat 447.960 kb on + strandat 447.961 kb on - strandat 447.961 kb on - strandat 447.965 kb on - strandat 448.005 kb on + strandat 448.072 kb on + strandat 448.166 kb on - strandat 448.201 kb on + strandat 448.202 kb on - strandat 448.213 kb on + strandat 448.214 kb on - strandat 448.214 kb on - strandat 448.214 kb on - strandat 448.214 kb on - strandat 448.234 kb on - strandat 448.266 kb on + strandat 448.266 kb on + strandat 448.266 kb on + strandat 448.267 kb on - strandat 448.319 kb on + strand, within Echvi_0409at 448.376 kb on + strand, within Echvi_0409at 448.376 kb on + strand, within Echvi_0409at 448.377 kb on - strand, within Echvi_0409at 448.379 kb on - strand, within Echvi_0409at 448.388 kb on - strand, within Echvi_0409at 448.433 kb on - strand, within Echvi_0409at 448.481 kb on - strand, within Echvi_0409at 448.528 kb on + strand, within Echvi_0409at 448.567 kb on + strand, within Echvi_0409at 448.567 kb on + strand, within Echvi_0409at 448.567 kb on + strand, within Echvi_0409at 448.591 kb on + strand, within Echvi_0409at 448.592 kb on - strand, within Echvi_0409at 448.592 kb on - strand, within Echvi_0409at 448.594 kb on + strand, within Echvi_0409at 448.594 kb on + strand, within Echvi_0409at 448.595 kb on - strand, within Echvi_0409at 448.706 kb on + strand, within Echvi_0409at 448.722 kb on - strand, within Echvi_0409at 448.730 kb on + strand, within Echvi_0409at 448.778 kb on + strand, within Echvi_0409at 448.778 kb on + strand, within Echvi_0409at 448.808 kb on + strand, within Echvi_0409at 448.809 kb on - strand, within Echvi_0409at 448.863 kb on - strand, within Echvi_0409at 448.863 kb on - strand, within Echvi_0409at 448.900 kb on + strand, within Echvi_0409at 448.920 kb on + strand, within Echvi_0409at 448.920 kb on + strand, within Echvi_0409at 448.920 kb on + strand, within Echvi_0409at 448.921 kb on - strand, within Echvi_0409at 448.921 kb on - strand, within Echvi_0409at 448.934 kb on - strand, within Echvi_0409at 448.936 kb on + strand, within Echvi_0409at 448.942 kb on + strand, within Echvi_0409at 448.943 kb on - strand, within Echvi_0409at 449.031 kb on + strand, within Echvi_0409at 449.031 kb on + strand, within Echvi_0409at 449.099 kb on + strand, within Echvi_0409at 449.120 kb on + strand, within Echvi_0409at 449.137 kb on + strand, within Echvi_0409at 449.137 kb on + strand, within Echvi_0409at 449.137 kb on + strand, within Echvi_0409at 449.138 kb on - strand, within Echvi_0409at 449.138 kb on - strand, within Echvi_0409at 449.138 kb on - strand, within Echvi_0409at 449.141 kb on + strand, within Echvi_0409at 449.141 kb on + strand, within Echvi_0409at 449.142 kb on - strand, within Echvi_0409at 449.150 kb on + strand, within Echvi_0409at 449.150 kb on + strand, within Echvi_0409at 449.151 kb on - strand, within Echvi_0409at 449.151 kb on - strand, within Echvi_0409at 449.151 kb on - strand, within Echvi_0409at 449.151 kb on - strand, within Echvi_0409at 449.151 kb on - strand, within Echvi_0409at 449.229 kb on + strand, within Echvi_0409at 449.230 kb on - strand, within Echvi_0409at 449.230 kb on - strand, within Echvi_0409at 449.233 kb on + strand, within Echvi_0409at 449.233 kb on + strand, within Echvi_0409at 449.233 kb on + strand, within Echvi_0409at 449.262 kb on + strand, within Echvi_0409at 449.267 kb on + strand, within Echvi_0409at 449.268 kb on - strandat 449.294 kb on + strandat 449.299 kb on + strandat 449.303 kb on - strandat 449.318 kb on + strandat 449.318 kb on + strandat 449.318 kb on + strandat 449.338 kb on + strandat 449.339 kb on - strandat 449.348 kb on - strandat 449.357 kb on + strandat 449.444 kb on + strandat 449.493 kb on + strandat 449.503 kb on + strandat 449.504 kb on - strandat 449.504 kb on - strandat 449.515 kb on - strandat 449.637 kb on + strandat 449.637 kb on + strandat 449.687 kb on + strandat 449.702 kb on + strand, within Echvi_0410at 449.706 kb on - strand, within Echvi_0410at 449.730 kb on + strand, within Echvi_0410at 449.749 kb on + strand, within Echvi_0410at 449.786 kb on - strand, within Echvi_0410at 449.833 kb on - strand, within Echvi_0410at 449.859 kb on + strand, within Echvi_0410at 449.860 kb on - strand, within Echvi_0410at 449.879 kb on + strand, within Echvi_0410at 449.914 kb on - strand, within Echvi_0410at 449.945 kb on + strand, within Echvi_0410at 449.961 kb on + strand, within Echvi_0410at 449.965 kb on + strand, within Echvi_0410at 449.965 kb on + strand, within Echvi_0410at 449.965 kb on + strand, within Echvi_0410at 449.966 kb on - strand, within Echvi_0410at 449.966 kb on - strandat 449.967 kb on + strand, within Echvi_0410at 449.968 kb on - strand, within Echvi_0410at 450.021 kb on + strand, within Echvi_0410at 450.022 kb on - strand, within Echvi_0410at 450.023 kb on + strand, within Echvi_0410at 450.024 kb on - strand, within Echvi_0410at 450.038 kb on - strand, within Echvi_0410at 450.050 kb on - strand, within Echvi_0410at 450.050 kb on - strand, within Echvi_0410at 450.061 kb on + strand, within Echvi_0410at 450.062 kb on - strand, within Echvi_0410at 450.062 kb on - strand, within Echvi_0410at 450.062 kb on - strand, within Echvi_0410at 450.065 kb on - strand, within Echvi_0410at 450.079 kb on + strand, within Echvi_0410at 450.079 kb on + strand, within Echvi_0410at 450.154 kb on + strand, within Echvi_0410at 450.155 kb on - strand, within Echvi_0410at 450.214 kb on + strand, within Echvi_0410at 450.235 kb on - strand, within Echvi_0410at 450.267 kb on + strand, within Echvi_0410at 450.277 kb on + strand, within Echvi_0410at 450.277 kb on + strand, within Echvi_0410at 450.277 kb on + strand, within Echvi_0410at 450.284 kb on + strand, within Echvi_0410at 450.292 kb on + strand, within Echvi_0410at 450.319 kb on - strandat 450.347 kb on - strandat 450.360 kb on + strandat 450.361 kb on - strandat 450.370 kb on + strandat 450.372 kb on + strandat 450.372 kb on + strandat 450.372 kb on + strandat 450.373 kb on - strandat 450.373 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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447,168 + Echvi_0408 0.70 -0.5
447,169 - Echvi_0408 0.70 +0.0
447,301 + Echvi_0408 0.74 -1.1
447,302 - Echvi_0408 0.74 -1.5
447,359 + Echvi_0408 0.76 +1.0
447,363 + Echvi_0408 0.76 -0.9
447,363 + Echvi_0408 0.76 -1.8
447,363 + Echvi_0408 0.76 -0.7
447,364 - Echvi_0408 0.76 -0.9
447,364 - Echvi_0408 0.76 -0.3
447,364 - Echvi_0408 0.76 +0.4
447,364 - Echvi_0408 0.76 +1.1
447,364 - Echvi_0408 0.76 -0.9
447,364 - Echvi_0408 0.76 +0.6
447,368 + Echvi_0408 0.76 +2.2
447,369 - Echvi_0408 0.76 +0.4
447,408 + Echvi_0408 0.78 -0.2
447,411 + Echvi_0408 0.78 +0.1
447,411 + Echvi_0408 0.78 -0.2
447,418 - Echvi_0408 0.78 +1.8
447,488 - Echvi_0408 0.80 +0.0
447,488 - Echvi_0408 0.80 -0.4
447,489 + Echvi_0408 0.80 +0.1
447,489 + Echvi_0408 0.80 +0.8
447,511 - Echvi_0408 0.81 -1.1
447,511 - Echvi_0408 0.81 -1.2
447,545 - Echvi_0408 0.82 +1.3
447,548 + Echvi_0408 0.82 +0.3
447,548 + Echvi_0408 0.82 -1.0
447,549 - Echvi_0408 0.82 -2.2
447,596 - Echvi_0408 0.84 -1.0
447,596 - Echvi_0408 0.84 -0.1
447,596 - Echvi_0408 0.84 -0.8
447,597 + Echvi_0408 0.84 -0.1
447,597 + Echvi_0408 0.84 -1.2
447,597 + Echvi_0408 0.84 -1.3
447,604 - Echvi_0408 0.84 -0.7
447,697 + Echvi_0408 0.87 +0.2
447,758 + Echvi_0408 0.89 +1.1
447,763 + Echvi_0408 0.89 +0.0
447,763 + Echvi_0408 0.89 -1.0
447,769 + Echvi_0408 0.89 +0.3
447,770 - Echvi_0408 0.89 +0.8
447,773 - Echvi_0408 0.89 -0.1
447,773 - Echvi_0408 0.89 -0.1
447,773 - Echvi_0408 0.89 -0.7
447,780 + Echvi_0408 0.89 -0.4
447,781 - Echvi_0408 0.89 +1.1
447,808 + +0.1
447,808 + -0.5
447,809 - -0.7
447,809 - -1.5
447,810 + +0.1
447,859 + -0.1
447,860 - -0.2
447,862 - +1.4
447,872 - +0.8
447,873 + -2.9
447,873 + -0.0
447,888 + +0.5
447,889 - +0.3
447,901 + -2.0
447,901 + -0.6
447,902 - -1.9
447,903 + +0.0
447,908 + -0.8
447,909 - -0.8
447,960 + +1.0
447,961 - -1.7
447,961 - +0.1
447,965 - -2.8
448,005 + +1.6
448,072 + +0.8
448,166 - -0.6
448,201 + -1.1
448,202 - -0.4
448,213 + -0.3
448,214 - +0.2
448,214 - +0.0
448,214 - +0.8
448,214 - -0.9
448,234 - +0.1
448,266 + +0.3
448,266 + +0.2
448,266 + +1.3
448,267 - -0.8
448,319 + Echvi_0409 0.14 -0.6
448,376 + Echvi_0409 0.18 +1.8
448,376 + Echvi_0409 0.18 +0.9
448,377 - Echvi_0409 0.18 -1.4
448,379 - Echvi_0409 0.19 +0.0
448,388 - Echvi_0409 0.19 -1.5
448,433 - Echvi_0409 0.23 +0.5
448,481 - Echvi_0409 0.27 +0.0
448,528 + Echvi_0409 0.30 -1.0
448,567 + Echvi_0409 0.34 -1.2
448,567 + Echvi_0409 0.34 +0.7
448,567 + Echvi_0409 0.34 +0.8
448,591 + Echvi_0409 0.35 -1.4
448,592 - Echvi_0409 0.36 -0.1
448,592 - Echvi_0409 0.36 -0.9
448,594 + Echvi_0409 0.36 +1.0
448,594 + Echvi_0409 0.36 -1.3
448,595 - Echvi_0409 0.36 -0.6
448,706 + Echvi_0409 0.45 +0.0
448,722 - Echvi_0409 0.46 +0.2
448,730 + Echvi_0409 0.47 +0.7
448,778 + Echvi_0409 0.50 +0.0
448,778 + Echvi_0409 0.50 -0.5
448,808 + Echvi_0409 0.53 +0.5
448,809 - Echvi_0409 0.53 -0.3
448,863 - Echvi_0409 0.57 -1.2
448,863 - Echvi_0409 0.57 -0.2
448,900 + Echvi_0409 0.60 -0.5
448,920 + Echvi_0409 0.62 +0.5
448,920 + Echvi_0409 0.62 -1.1
448,920 + Echvi_0409 0.62 +0.8
448,921 - Echvi_0409 0.62 -0.9
448,921 - Echvi_0409 0.62 -0.4
448,934 - Echvi_0409 0.63 -0.5
448,936 + Echvi_0409 0.63 -0.7
448,942 + Echvi_0409 0.64 -1.0
448,943 - Echvi_0409 0.64 -0.5
449,031 + Echvi_0409 0.71 -0.1
449,031 + Echvi_0409 0.71 -0.7
449,099 + Echvi_0409 0.76 +1.1
449,120 + Echvi_0409 0.78 +0.1
449,137 + Echvi_0409 0.79 +0.7
449,137 + Echvi_0409 0.79 -1.2
449,137 + Echvi_0409 0.79 -2.2
449,138 - Echvi_0409 0.79 +0.3
449,138 - Echvi_0409 0.79 -0.5
449,138 - Echvi_0409 0.79 +0.1
449,141 + Echvi_0409 0.80 +0.9
449,141 + Echvi_0409 0.80 +0.2
449,142 - Echvi_0409 0.80 -0.3
449,150 + Echvi_0409 0.80 -0.2
449,150 + Echvi_0409 0.80 +1.8
449,151 - Echvi_0409 0.80 -1.1
449,151 - Echvi_0409 0.80 -1.5
449,151 - Echvi_0409 0.80 -1.2
449,151 - Echvi_0409 0.80 -0.3
449,151 - Echvi_0409 0.80 -0.8
449,229 + Echvi_0409 0.87 +0.8
449,230 - Echvi_0409 0.87 -1.2
449,230 - Echvi_0409 0.87 -2.4
449,233 + Echvi_0409 0.87 +0.2
449,233 + Echvi_0409 0.87 +0.9
449,233 + Echvi_0409 0.87 +0.2
449,262 + Echvi_0409 0.89 +0.6
449,267 + Echvi_0409 0.90 -0.1
449,268 - +0.8
449,294 + +0.4
449,299 + +0.9
449,303 - +1.5
449,318 + +1.5
449,318 + +0.3
449,318 + -0.1
449,338 + -0.3
449,339 - +1.0
449,348 - -0.2
449,357 + -0.7
449,444 + -0.7
449,493 + -0.6
449,503 + -0.4
449,504 - -2.3
449,504 - +0.1
449,515 - +0.3
449,637 + -0.6
449,637 + -1.3
449,687 + +0.8
449,702 + Echvi_0410 0.11 +0.2
449,706 - Echvi_0410 0.11 -0.0
449,730 + Echvi_0410 0.14 +0.2
449,749 + Echvi_0410 0.17 +0.1
449,786 - Echvi_0410 0.21 -0.7
449,833 - Echvi_0410 0.28 -0.8
449,859 + Echvi_0410 0.31 +0.1
449,860 - Echvi_0410 0.31 +0.2
449,879 + Echvi_0410 0.33 -0.1
449,914 - Echvi_0410 0.38 -1.8
449,945 + Echvi_0410 0.42 -0.4
449,961 + Echvi_0410 0.44 +0.2
449,965 + Echvi_0410 0.45 -0.9
449,965 + Echvi_0410 0.45 -0.4
449,965 + Echvi_0410 0.45 +0.9
449,966 - Echvi_0410 0.45 +0.5
449,966 - +1.8
449,967 + Echvi_0410 0.45 +0.3
449,968 - Echvi_0410 0.45 +0.1
450,021 + Echvi_0410 0.52 -1.3
450,022 - Echvi_0410 0.52 +0.6
450,023 + Echvi_0410 0.52 +0.9
450,024 - Echvi_0410 0.52 +0.3
450,038 - Echvi_0410 0.54 -0.6
450,050 - Echvi_0410 0.56 -0.5
450,050 - Echvi_0410 0.56 +0.2
450,061 + Echvi_0410 0.57 +0.8
450,062 - Echvi_0410 0.57 -1.8
450,062 - Echvi_0410 0.57 -0.5
450,062 - Echvi_0410 0.57 -1.8
450,065 - Echvi_0410 0.57 -0.4
450,079 + Echvi_0410 0.59 +0.3
450,079 + Echvi_0410 0.59 -0.3
450,154 + Echvi_0410 0.69 -0.3
450,155 - Echvi_0410 0.69 -0.2
450,214 + Echvi_0410 0.77 +0.9
450,235 - Echvi_0410 0.79 -0.2
450,267 + Echvi_0410 0.84 -1.0
450,277 + Echvi_0410 0.85 -0.2
450,277 + Echvi_0410 0.85 -0.7
450,277 + Echvi_0410 0.85 -1.2
450,284 + Echvi_0410 0.86 -1.3
450,292 + Echvi_0410 0.87 +1.8
450,319 - -0.9
450,347 - -0.0
450,360 + -0.8
450,361 - -0.3
450,370 + -0.9
450,372 + -0.5
450,372 + +2.4
450,372 + +0.1
450,373 - -0.2
450,373 - +0.8

Or see this region's nucleotide sequence