Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0294

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0292 and Echvi_0293 are separated by 131 nucleotidesEchvi_0293 and Echvi_0294 overlap by 1 nucleotidesEchvi_0294 and Echvi_0295 are separated by 69 nucleotides Echvi_0292: Echvi_0292 - Superfamily I DNA and RNA helicases, at 300,679 to 302,937 _0292 Echvi_0293: Echvi_0293 - hypothetical protein, at 303,069 to 303,737 _0293 Echvi_0294: Echvi_0294 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 303,737 to 305,044 _0294 Echvi_0295: Echvi_0295 - hypothetical protein, at 305,114 to 305,938 _0295 Position (kb) 303 304 305 306Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 302.900 kb on + strandat 302.900 kb on + strandat 302.903 kb on + strandat 302.903 kb on + strandat 302.903 kb on + strandat 302.939 kb on - strandat 302.985 kb on + strandat 302.985 kb on + strandat 302.985 kb on + strandat 302.985 kb on + strandat 302.987 kb on + strandat 302.994 kb on + strandat 302.994 kb on + strandat 302.994 kb on + strandat 302.994 kb on + strandat 302.994 kb on + strandat 303.049 kb on + strandat 303.144 kb on + strand, within Echvi_0293at 303.144 kb on + strand, within Echvi_0293at 303.144 kb on + strand, within Echvi_0293at 303.146 kb on + strandat 303.146 kb on + strand, within Echvi_0293at 303.146 kb on + strand, within Echvi_0293at 303.191 kb on + strand, within Echvi_0293at 303.461 kb on + strand, within Echvi_0293at 303.465 kb on + strand, within Echvi_0293at 303.713 kb on + strandat 305.081 kb on - strandat 305.081 kb on - strandat 305.095 kb on + strandat 305.116 kb on - strandat 305.127 kb on - strandat 305.158 kb on + strandat 305.158 kb on + strandat 305.159 kb on - strandat 305.160 kb on + strandat 305.160 kb on + strandat 305.160 kb on + strandat 305.160 kb on + strandat 305.161 kb on - strandat 305.161 kb on - strandat 305.161 kb on - strandat 305.161 kb on - strandat 305.166 kb on + strandat 305.168 kb on + strandat 305.168 kb on + strandat 305.169 kb on - strandat 305.195 kb on + strandat 305.222 kb on - strand, within Echvi_0295at 305.222 kb on - strand, within Echvi_0295at 305.224 kb on - strand, within Echvi_0295at 305.224 kb on - strand, within Echvi_0295at 305.269 kb on + strand, within Echvi_0295at 305.269 kb on + strand, within Echvi_0295at 305.269 kb on + strand, within Echvi_0295at 305.269 kb on + strand, within Echvi_0295at 305.269 kb on + strand, within Echvi_0295at 305.270 kb on - strand, within Echvi_0295at 305.271 kb on + strand, within Echvi_0295at 305.271 kb on + strand, within Echvi_0295at 305.271 kb on + strand, within Echvi_0295at 305.271 kb on + strand, within Echvi_0295at 305.272 kb on - strand, within Echvi_0295at 305.274 kb on + strand, within Echvi_0295at 305.279 kb on + strand, within Echvi_0295at 305.313 kb on + strand, within Echvi_0295at 305.323 kb on + strand, within Echvi_0295at 305.323 kb on + strand, within Echvi_0295at 305.323 kb on + strand, within Echvi_0295at 305.324 kb on - strand, within Echvi_0295at 305.324 kb on - strand, within Echvi_0295at 305.324 kb on - strand, within Echvi_0295at 305.324 kb on - strand, within Echvi_0295at 305.324 kb on - strand, within Echvi_0295at 305.324 kb on - strand, within Echvi_0295at 305.324 kb on - strand, within Echvi_0295at 305.325 kb on + strand, within Echvi_0295at 305.325 kb on + strand, within Echvi_0295at 305.325 kb on + strand, within Echvi_0295at 305.325 kb on + strand, within Echvi_0295at 305.326 kb on - strand, within Echvi_0295at 305.344 kb on + strand, within Echvi_0295at 305.344 kb on + strand, within Echvi_0295at 305.345 kb on - strand, within Echvi_0295at 305.410 kb on + strand, within Echvi_0295at 305.410 kb on + strand, within Echvi_0295at 305.410 kb on + strand, within Echvi_0295at 305.410 kb on + strand, within Echvi_0295at 305.410 kb on + strand, within Echvi_0295at 305.411 kb on - strand, within Echvi_0295at 305.411 kb on - strand, within Echvi_0295at 305.413 kb on - strand, within Echvi_0295at 305.413 kb on - strand, within Echvi_0295at 305.475 kb on + strand, within Echvi_0295at 305.492 kb on + strand, within Echvi_0295at 305.492 kb on + strand, within Echvi_0295at 305.493 kb on - strand, within Echvi_0295at 305.562 kb on - strand, within Echvi_0295at 305.571 kb on + strand, within Echvi_0295at 305.599 kb on - strand, within Echvi_0295at 305.632 kb on + strand, within Echvi_0295at 305.632 kb on + strand, within Echvi_0295at 305.632 kb on + strand, within Echvi_0295at 305.632 kb on + strand, within Echvi_0295at 305.633 kb on - strand, within Echvi_0295at 305.639 kb on - strand, within Echvi_0295at 305.643 kb on + strand, within Echvi_0295at 305.658 kb on + strand, within Echvi_0295at 305.659 kb on - strand, within Echvi_0295at 305.659 kb on - strand, within Echvi_0295at 305.671 kb on + strand, within Echvi_0295at 305.673 kb on + strand, within Echvi_0295at 305.673 kb on + strand, within Echvi_0295at 305.701 kb on + strand, within Echvi_0295at 305.701 kb on + strand, within Echvi_0295at 305.701 kb on + strand, within Echvi_0295at 305.702 kb on - strand, within Echvi_0295at 305.702 kb on - strand, within Echvi_0295at 305.703 kb on + strand, within Echvi_0295at 305.704 kb on - strand, within Echvi_0295at 305.704 kb on - strand, within Echvi_0295at 305.746 kb on + strand, within Echvi_0295at 305.747 kb on - strand, within Echvi_0295at 305.747 kb on - strand, within Echvi_0295at 305.783 kb on + strand, within Echvi_0295at 305.783 kb on + strand, within Echvi_0295at 305.804 kb on - strand, within Echvi_0295at 305.895 kb on - strandat 305.958 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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302,900 + +0.2
302,900 + -1.0
302,903 + -1.0
302,903 + +0.2
302,903 + +1.8
302,939 - +1.4
302,985 + -0.3
302,985 + +1.2
302,985 + +1.4
302,985 + +0.1
302,987 + -0.3
302,994 + +0.0
302,994 + +0.4
302,994 + +1.2
302,994 + +0.3
302,994 + +0.6
303,049 + -2.0
303,144 + Echvi_0293 0.11 +0.2
303,144 + Echvi_0293 0.11 +0.5
303,144 + Echvi_0293 0.11 +0.1
303,146 + +1.8
303,146 + Echvi_0293 0.12 +1.0
303,146 + Echvi_0293 0.12 +0.0
303,191 + Echvi_0293 0.18 +0.4
303,461 + Echvi_0293 0.59 -0.2
303,465 + Echvi_0293 0.59 -0.1
303,713 + -1.1
305,081 - +0.7
305,081 - +1.1
305,095 + -0.3
305,116 - -0.2
305,127 - -1.1
305,158 + +1.4
305,158 + -0.3
305,159 - -1.5
305,160 + +0.0
305,160 + +1.8
305,160 + -0.7
305,160 + -0.2
305,161 - +0.8
305,161 - -0.3
305,161 - -0.1
305,161 - +0.4
305,166 + -0.3
305,168 + +0.4
305,168 + -2.8
305,169 - -0.1
305,195 + +1.6
305,222 - Echvi_0295 0.13 -1.0
305,222 - Echvi_0295 0.13 -0.1
305,224 - Echvi_0295 0.13 -0.9
305,224 - Echvi_0295 0.13 +1.2
305,269 + Echvi_0295 0.19 -0.7
305,269 + Echvi_0295 0.19 -0.2
305,269 + Echvi_0295 0.19 +0.2
305,269 + Echvi_0295 0.19 +1.1
305,269 + Echvi_0295 0.19 -1.5
305,270 - Echvi_0295 0.19 -0.4
305,271 + Echvi_0295 0.19 +1.4
305,271 + Echvi_0295 0.19 -0.2
305,271 + Echvi_0295 0.19 +1.6
305,271 + Echvi_0295 0.19 -0.4
305,272 - Echvi_0295 0.19 +0.1
305,274 + Echvi_0295 0.19 +0.2
305,279 + Echvi_0295 0.20 -0.6
305,313 + Echvi_0295 0.24 -0.2
305,323 + Echvi_0295 0.25 -0.4
305,323 + Echvi_0295 0.25 -0.0
305,323 + Echvi_0295 0.25 +1.8
305,324 - Echvi_0295 0.25 -0.8
305,324 - Echvi_0295 0.25 +1.8
305,324 - Echvi_0295 0.25 +0.0
305,324 - Echvi_0295 0.25 +0.5
305,324 - Echvi_0295 0.25 +1.4
305,324 - Echvi_0295 0.25 -0.5
305,324 - Echvi_0295 0.25 +0.0
305,325 + Echvi_0295 0.26 -0.1
305,325 + Echvi_0295 0.26 -0.6
305,325 + Echvi_0295 0.26 +0.1
305,325 + Echvi_0295 0.26 -0.2
305,326 - Echvi_0295 0.26 -0.0
305,344 + Echvi_0295 0.28 -0.2
305,344 + Echvi_0295 0.28 -1.9
305,345 - Echvi_0295 0.28 -0.3
305,410 + Echvi_0295 0.36 +0.6
305,410 + Echvi_0295 0.36 +0.2
305,410 + Echvi_0295 0.36 -0.3
305,410 + Echvi_0295 0.36 +0.2
305,410 + Echvi_0295 0.36 -0.6
305,411 - Echvi_0295 0.36 +3.0
305,411 - Echvi_0295 0.36 -0.7
305,413 - Echvi_0295 0.36 -0.1
305,413 - Echvi_0295 0.36 +0.2
305,475 + Echvi_0295 0.44 -1.6
305,492 + Echvi_0295 0.46 -0.2
305,492 + Echvi_0295 0.46 +0.5
305,493 - Echvi_0295 0.46 -0.2
305,562 - Echvi_0295 0.54 -0.6
305,571 + Echvi_0295 0.55 -1.2
305,599 - Echvi_0295 0.59 -0.4
305,632 + Echvi_0295 0.63 -0.8
305,632 + Echvi_0295 0.63 +0.2
305,632 + Echvi_0295 0.63 -0.4
305,632 + Echvi_0295 0.63 -0.2
305,633 - Echvi_0295 0.63 +0.3
305,639 - Echvi_0295 0.64 -0.7
305,643 + Echvi_0295 0.64 +0.3
305,658 + Echvi_0295 0.66 -0.1
305,659 - Echvi_0295 0.66 -0.0
305,659 - Echvi_0295 0.66 -2.2
305,671 + Echvi_0295 0.68 -0.7
305,673 + Echvi_0295 0.68 +2.2
305,673 + Echvi_0295 0.68 +0.1
305,701 + Echvi_0295 0.71 -0.6
305,701 + Echvi_0295 0.71 +0.0
305,701 + Echvi_0295 0.71 -0.2
305,702 - Echvi_0295 0.71 -0.6
305,702 - Echvi_0295 0.71 +0.3
305,703 + Echvi_0295 0.71 +0.9
305,704 - Echvi_0295 0.72 +0.8
305,704 - Echvi_0295 0.72 -1.2
305,746 + Echvi_0295 0.77 -1.1
305,747 - Echvi_0295 0.77 +0.0
305,747 - Echvi_0295 0.77 -0.8
305,783 + Echvi_0295 0.81 +1.4
305,783 + Echvi_0295 0.81 +0.2
305,804 - Echvi_0295 0.84 -0.1
305,895 - +0.4
305,958 - -1.0

Or see this region's nucleotide sequence