Strain Fitness in Agrobacterium fabrum C58 around Atu0829

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0827 and Atu0828 are separated by 365 nucleotidesAtu0828 and Atu0829 are separated by 11 nucleotidesAtu0829 and Atu0830 are separated by 230 nucleotides Atu0827: Atu0827 - hypothetical protein, at 826,018 to 826,254 Atu0827 Atu0828: Atu0828 - transcriptional regulator BetI, at 826,620 to 827,240 Atu0828 Atu0829: Atu0829 - betaine aldehyde dehydrogenase, at 827,252 to 828,733 Atu0829 Atu0830: Atu0830 - choline dehydrogenase, at 828,964 to 830,613 Atu0830 Position (kb) 827 828 829Strain fitness (log2 ratio) -2 -1 0 1at 826.272 kb on - strandat 826.340 kb on - strandat 826.430 kb on - strandat 826.617 kb on + strandat 826.681 kb on + strandat 826.689 kb on - strand, within Atu0828at 826.689 kb on - strand, within Atu0828at 826.689 kb on - strand, within Atu0828at 826.715 kb on + strand, within Atu0828at 826.723 kb on - strand, within Atu0828at 826.863 kb on - strand, within Atu0828at 826.887 kb on + strand, within Atu0828at 826.913 kb on + strand, within Atu0828at 826.920 kb on + strand, within Atu0828at 827.121 kb on - strand, within Atu0828at 827.225 kb on + strandat 827.235 kb on + strandat 827.235 kb on + strandat 827.235 kb on + strandat 827.243 kb on - strandat 827.243 kb on - strandat 827.243 kb on - strandat 827.243 kb on - strandat 827.269 kb on + strandat 827.269 kb on + strandat 827.289 kb on - strandat 827.289 kb on - strandat 827.543 kb on + strand, within Atu0829at 827.595 kb on + strand, within Atu0829at 827.597 kb on + strand, within Atu0829at 827.639 kb on - strand, within Atu0829at 827.762 kb on - strand, within Atu0829at 827.799 kb on - strand, within Atu0829at 827.799 kb on - strand, within Atu0829at 827.822 kb on + strand, within Atu0829at 827.830 kb on - strand, within Atu0829at 827.858 kb on - strand, within Atu0829at 827.880 kb on - strand, within Atu0829at 827.942 kb on + strand, within Atu0829at 827.952 kb on + strand, within Atu0829at 828.097 kb on + strand, within Atu0829at 828.110 kb on + strand, within Atu0829at 828.115 kb on + strand, within Atu0829at 828.123 kb on - strand, within Atu0829at 828.215 kb on + strand, within Atu0829at 828.228 kb on - strand, within Atu0829at 828.292 kb on + strand, within Atu0829at 828.292 kb on + strand, within Atu0829at 828.292 kb on + strand, within Atu0829at 828.298 kb on + strand, within Atu0829at 828.314 kb on - strand, within Atu0829at 828.314 kb on - strand, within Atu0829at 828.401 kb on - strand, within Atu0829at 828.424 kb on + strand, within Atu0829at 828.442 kb on - strand, within Atu0829at 828.463 kb on + strand, within Atu0829at 828.470 kb on + strand, within Atu0829at 828.470 kb on + strand, within Atu0829at 828.470 kb on + strand, within Atu0829at 828.566 kb on - strand, within Atu0829at 828.695 kb on + strandat 828.705 kb on + strandat 828.759 kb on - strandat 828.759 kb on - strandat 828.793 kb on - strandat 828.824 kb on - strandat 828.883 kb on + strandat 828.899 kb on + strandat 828.899 kb on + strandat 828.899 kb on + strandat 828.933 kb on + strandat 828.945 kb on + strandat 829.085 kb on + strandat 829.105 kb on + strandat 829.177 kb on - strand, within Atu0830at 829.282 kb on - strand, within Atu0830at 829.284 kb on + strand, within Atu0830at 829.296 kb on + strand, within Atu0830at 829.296 kb on + strand, within Atu0830at 829.304 kb on - strand, within Atu0830at 829.304 kb on - strand, within Atu0830at 829.304 kb on - strand, within Atu0830at 829.304 kb on - strand, within Atu0830at 829.304 kb on - strand, within Atu0830at 829.304 kb on - strand, within Atu0830at 829.315 kb on + strand, within Atu0830at 829.320 kb on + strand, within Atu0830at 829.323 kb on - strand, within Atu0830at 829.328 kb on - strand, within Atu0830at 829.384 kb on - strand, within Atu0830at 829.398 kb on + strand, within Atu0830at 829.415 kb on - strand, within Atu0830at 829.430 kb on - strand, within Atu0830at 829.507 kb on - strand, within Atu0830at 829.549 kb on + strand, within Atu0830at 829.694 kb on - strand, within Atu0830

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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826,272 - -0.6
826,340 - -0.8
826,430 - +0.2
826,617 + -0.3
826,681 + +0.8
826,689 - Atu0828 0.11 -0.0
826,689 - Atu0828 0.11 -0.0
826,689 - Atu0828 0.11 -0.3
826,715 + Atu0828 0.15 +0.0
826,723 - Atu0828 0.17 +0.3
826,863 - Atu0828 0.39 +0.2
826,887 + Atu0828 0.43 +1.1
826,913 + Atu0828 0.47 -0.4
826,920 + Atu0828 0.48 -0.0
827,121 - Atu0828 0.81 -0.1
827,225 + +0.4
827,235 + -0.3
827,235 + +0.5
827,235 + +0.5
827,243 - -0.8
827,243 - +0.1
827,243 - +0.4
827,243 - -0.5
827,269 + -1.3
827,269 + -0.0
827,289 - +0.5
827,289 - +0.2
827,543 + Atu0829 0.20 -0.4
827,595 + Atu0829 0.23 +0.1
827,597 + Atu0829 0.23 -0.4
827,639 - Atu0829 0.26 -0.5
827,762 - Atu0829 0.34 -0.1
827,799 - Atu0829 0.37 +1.4
827,799 - Atu0829 0.37 -2.4
827,822 + Atu0829 0.38 -1.9
827,830 - Atu0829 0.39 -0.1
827,858 - Atu0829 0.41 -0.5
827,880 - Atu0829 0.42 -0.3
827,942 + Atu0829 0.47 -0.5
827,952 + Atu0829 0.47 -0.7
828,097 + Atu0829 0.57 -2.3
828,110 + Atu0829 0.58 -0.7
828,115 + Atu0829 0.58 -0.4
828,123 - Atu0829 0.59 -0.4
828,215 + Atu0829 0.65 +0.5
828,228 - Atu0829 0.66 -0.2
828,292 + Atu0829 0.70 +0.1
828,292 + Atu0829 0.70 -0.7
828,292 + Atu0829 0.70 -0.7
828,298 + Atu0829 0.71 +0.1
828,314 - Atu0829 0.72 -0.4
828,314 - Atu0829 0.72 +0.3
828,401 - Atu0829 0.78 +0.6
828,424 + Atu0829 0.79 -0.4
828,442 - Atu0829 0.80 +0.9
828,463 + Atu0829 0.82 -0.2
828,470 + Atu0829 0.82 -0.0
828,470 + Atu0829 0.82 -0.3
828,470 + Atu0829 0.82 -0.6
828,566 - Atu0829 0.89 -0.7
828,695 + +0.2
828,705 + +0.2
828,759 - -0.2
828,759 - +0.4
828,793 - -0.4
828,824 - +0.3
828,883 + +0.2
828,899 + -0.0
828,899 + -0.8
828,899 + -1.0
828,933 + +0.3
828,945 + -0.6
829,085 + -0.7
829,105 + -0.7
829,177 - Atu0830 0.13 +1.7
829,282 - Atu0830 0.19 -0.0
829,284 + Atu0830 0.19 -0.1
829,296 + Atu0830 0.20 -0.2
829,296 + Atu0830 0.20 +0.2
829,304 - Atu0830 0.21 -0.1
829,304 - Atu0830 0.21 +0.5
829,304 - Atu0830 0.21 +0.4
829,304 - Atu0830 0.21 +0.2
829,304 - Atu0830 0.21 +0.2
829,304 - Atu0830 0.21 -0.2
829,315 + Atu0830 0.21 +0.8
829,320 + Atu0830 0.22 +0.1
829,323 - Atu0830 0.22 -0.2
829,328 - Atu0830 0.22 -0.1
829,384 - Atu0830 0.25 +0.5
829,398 + Atu0830 0.26 +1.0
829,415 - Atu0830 0.27 -0.4
829,430 - Atu0830 0.28 +0.6
829,507 - Atu0830 0.33 -0.3
829,549 + Atu0830 0.35 -0.7
829,694 - Atu0830 0.44 -0.3

Or see this region's nucleotide sequence