Strain Fitness in Escherichia coli BW25113 around b2701
Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbenicillin 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,821,522 | + | recA | b2699 | 0.75 | -2.0 |
2,821,638 | + | recA | b2699 | 0.85 | -0.6 |
2,821,701 | - | -0.4 | |||
2,821,810 | - | +0.4 | |||
2,821,810 | - | +1.0 | |||
2,822,013 | + | ygaD | b2700 | 0.29 | +0.5 |
2,822,231 | - | ygaD | b2700 | 0.72 | +0.2 |
2,822,232 | + | ygaD | b2700 | 0.72 | -0.7 |
2,822,333 | - | -0.3 | |||
2,822,358 | + | -0.0 | |||
2,822,437 | - | -1.4 | |||
2,822,488 | + | +0.3 | |||
2,822,520 | + | -0.9 | |||
2,822,520 | + | +1.2 | |||
2,822,545 | - | +0.1 | |||
2,822,598 | - | -1.0 | |||
2,822,641 | - | mltB | b2701 | 0.12 | -1.6 |
2,822,668 | + | mltB | b2701 | 0.14 | -0.4 |
2,822,764 | - | mltB | b2701 | 0.23 | -1.3 |
2,822,765 | - | mltB | b2701 | 0.23 | -0.8 |
2,822,827 | + | mltB | b2701 | 0.29 | -2.0 |
2,822,840 | - | mltB | b2701 | 0.30 | -1.9 |
2,822,880 | - | mltB | b2701 | 0.34 | -2.2 |
2,822,996 | + | mltB | b2701 | 0.44 | +0.4 |
2,823,026 | - | mltB | b2701 | 0.47 | -1.0 |
2,823,150 | + | mltB | b2701 | 0.59 | +1.0 |
2,823,162 | + | mltB | b2701 | 0.60 | -1.3 |
2,823,183 | + | mltB | b2701 | 0.62 | -0.0 |
2,823,256 | + | mltB | b2701 | 0.68 | -1.6 |
2,823,279 | - | mltB | b2701 | 0.71 | -1.6 |
2,823,486 | - | mltB | b2701 | 0.90 | +0.5 |
2,823,486 | - | mltB | b2701 | 0.90 | -1.9 |
2,823,519 | - | -1.1 | |||
2,823,519 | - | -1.4 | |||
2,823,633 | + | -0.9 | |||
2,823,673 | - | -0.2 | |||
2,823,673 | - | -0.6 | |||
2,823,689 | - | +0.6 | |||
2,823,807 | - | -0.6 | |||
2,823,849 | + | -0.4 | |||
2,823,872 | - | +0.2 | |||
2,823,876 | + | -0.0 | |||
2,823,939 | + | srlA | b2702 | 0.15 | -0.3 |
2,823,939 | + | srlA | b2702 | 0.15 | +0.6 |
2,823,970 | - | srlA | b2702 | 0.21 | +1.0 |
2,823,976 | - | srlA | b2702 | 0.22 | +0.3 |
2,824,104 | + | srlA | b2702 | 0.44 | -0.0 |
2,824,104 | + | srlA | b2702 | 0.44 | -0.4 |
2,824,117 | - | srlA | b2702 | 0.47 | +0.7 |
2,824,196 | + | srlA | b2702 | 0.61 | +0.5 |
2,824,229 | - | srlA | b2702 | 0.66 | +1.0 |
2,824,229 | - | srlA | b2702 | 0.66 | +1.0 |
2,824,287 | + | srlA | b2702 | 0.77 | -0.6 |
2,824,287 | + | srlA | b2702 | 0.77 | -0.6 |
2,824,300 | - | srlA | b2702 | 0.79 | -0.0 |
2,824,412 | - | +1.0 | |||
2,824,412 | - | +0.2 | |||
2,824,460 | + | +1.0 |
Or see this region's nucleotide sequence