Strain Fitness in Escherichia coli BW25113 around b1531
Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbenicillin 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,616,899 | + | +4.1 | |||
1,617,172 | - | +0.0 | |||
1,617,277 | - | marR | b1530 | 0.31 | +1.4 |
1,617,288 | + | marR | b1530 | 0.33 | +5.9 |
1,617,291 | - | marR | b1530 | 0.34 | +0.1 |
1,617,291 | - | marR | b1530 | 0.34 | +0.5 |
1,617,302 | + | marR | b1530 | 0.36 | +4.2 |
1,617,312 | - | marR | b1530 | 0.39 | +0.1 |
1,617,358 | + | marR | b1530 | 0.49 | +4.0 |
1,617,377 | + | marR | b1530 | 0.54 | +4.1 |
1,617,377 | + | marR | b1530 | 0.54 | +5.6 |
1,617,471 | - | marR | b1530 | 0.75 | +0.0 |
1,617,606 | + | +0.5 | |||
1,617,638 | + | marA | b1531 | 0.10 | -1.3 |
1,617,655 | - | marA | b1531 | 0.15 | -0.4 |
1,617,702 | + | marA | b1531 | 0.27 | -1.0 |
1,618,111 | - | marB | b1532 | 0.45 | +0.4 |
1,618,215 | - | +1.3 | |||
1,618,234 | - | +0.5 | |||
1,618,521 | - | ydeD | b1533 | 0.29 | -1.3 |
1,618,521 | - | ydeD | b1533 | 0.29 | +0.0 |
1,618,653 | + | ydeD | b1533 | 0.43 | +0.4 |
Or see this region's nucleotide sequence