Strain Fitness in Escherichia coli BW25113 around b0929
Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Carbenicillin 0.008 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 984,232 | - | aspC | b0928 | 0.41 | +1.6 |
| 984,326 | + | aspC | b0928 | 0.49 | +2.3 |
| 984,365 | - | aspC | b0928 | 0.52 | -0.2 |
| 984,402 | + | aspC | b0928 | 0.55 | +2.8 |
| 984,402 | + | aspC | b0928 | 0.55 | +2.9 |
| 984,535 | - | aspC | b0928 | 0.67 | -1.4 |
| 984,560 | + | aspC | b0928 | 0.69 | +1.6 |
| 984,560 | + | aspC | b0928 | 0.69 | +3.1 |
| 984,633 | + | aspC | b0928 | 0.75 | +3.2 |
| 984,633 | + | aspC | b0928 | 0.75 | +3.6 |
| 984,683 | - | aspC | b0928 | 0.79 | +0.7 |
| 984,792 | + | aspC | b0928 | 0.88 | +2.4 |
| 984,939 | + | +4.3 | |||
| 984,942 | + | +3.8 | |||
| 984,944 | + | +3.1 | |||
| 984,975 | + | +3.3 | |||
| 985,123 | - | +2.3 | |||
| 985,169 | + | +5.9 | |||
| 985,240 | + | ompF | b0929 | 0.11 | +5.7 |
| 985,259 | - | ompF | b0929 | 0.13 | +5.5 |
| 985,483 | + | ompF | b0929 | 0.34 | +5.8 |
| 985,548 | - | ompF | b0929 | 0.40 | +5.9 |
| 985,548 | - | ompF | b0929 | 0.40 | +6.8 |
| 985,682 | + | ompF | b0929 | 0.52 | +7.2 |
| 985,682 | + | ompF | b0929 | 0.52 | +6.9 |
| 985,805 | + | ompF | b0929 | 0.63 | +6.1 |
| 985,813 | - | ompF | b0929 | 0.64 | +2.4 |
| 985,880 | - | ompF | b0929 | 0.70 | +6.5 |
| 985,934 | + | ompF | b0929 | 0.75 | +6.4 |
| 985,934 | + | ompF | b0929 | 0.75 | +5.8 |
| 986,017 | + | ompF | b0929 | 0.83 | +4.7 |
| 986,017 | + | ompF | b0929 | 0.83 | +5.9 |
| 986,164 | - | +6.7 | |||
| 986,164 | - | +7.0 | |||
| 986,179 | - | +5.9 | |||
| 986,217 | - | +6.1 | |||
| 986,217 | - | +5.8 | |||
| 986,445 | - | -1.4 |
Or see this region's nucleotide sequence