Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b0878 and macB overlap by 4 nucleotides macB and cspD are separated by 72 nucleotides cspD and clpS are separated by 322 nucleotides clpS and clpA are separated by 30 nucleotides
b0878: b0878 - putative membrane protein (VIMSS), at 918,458 to 919,573
b0878
b0879: macB - fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component (NCBI), at 919,570 to 921,516
macB
b0880: cspD - cold shock protein homolog (NCBI), at 921,589 to 921,813
cspD
b0881: clpS - ATP-dependent Clp protease adaptor protein ClpS (NCBI), at 922,136 to 922,456
clpS
b0882: clpA - ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI), at 922,487 to 924,763
clpA
Position (kb) 919
920
921
922 Strain fitness (log2 ratio) -1
0
1
2
3 at 918.620 kb on + strand, within b0878 at 918.789 kb on - strand, within b0878 at 918.849 kb on - strand at 918.849 kb on - strand, within b0878 at 918.985 kb on + strand, within b0878 at 919.227 kb on - strand, within b0878 at 919.262 kb on + strand, within b0878 at 919.262 kb on + strand, within b0878 at 919.298 kb on - strand, within b0878 at 919.298 kb on - strand, within b0878 at 919.343 kb on + strand, within b0878 at 919.557 kb on - strand at 919.636 kb on + strand at 919.765 kb on + strand, within macB at 919.979 kb on + strand, within macB at 919.979 kb on + strand, within macB at 919.994 kb on - strand, within macB at 919.994 kb on - strand, within macB at 920.012 kb on + strand at 920.023 kb on + strand, within macB at 920.068 kb on - strand, within macB at 920.199 kb on - strand, within macB at 920.267 kb on + strand, within macB at 920.415 kb on - strand, within macB at 920.443 kb on + strand, within macB at 920.458 kb on - strand, within macB at 920.459 kb on + strand, within macB at 920.459 kb on + strand, within macB at 920.712 kb on - strand, within macB at 920.767 kb on - strand, within macB at 920.849 kb on + strand, within macB at 920.979 kb on + strand, within macB at 921.004 kb on + strand, within macB at 921.164 kb on + strand, within macB at 921.169 kb on + strand, within macB at 921.254 kb on - strand, within macB at 921.254 kb on - strand, within macB at 921.271 kb on + strand, within macB at 921.298 kb on + strand, within macB at 921.298 kb on + strand, within macB at 921.790 kb on + strand, within cspD at 921.790 kb on + strand, within cspD at 921.956 kb on - strand at 921.956 kb on - strand at 922.042 kb on + strand at 922.042 kb on + strand at 922.055 kb on + strand at 922.069 kb on + strand at 922.091 kb on - strand at 922.103 kb on + strand at 922.124 kb on + strand at 922.246 kb on - strand, within clpS at 922.417 kb on + strand, within clpS at 922.435 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 918,620 + b0878 b0878 0.15 -0.0 918,789 - b0878 b0878 0.30 +3.3 918,849 - +1.0 918,849 - b0878 b0878 0.35 +1.0 918,985 + b0878 b0878 0.47 +0.1 919,227 - b0878 b0878 0.69 -0.6 919,262 + b0878 b0878 0.72 +0.6 919,262 + b0878 b0878 0.72 +1.0 919,298 - b0878 b0878 0.75 +0.0 919,298 - b0878 b0878 0.75 +0.6 919,343 + b0878 b0878 0.79 -0.6 919,557 - -1.0 919,636 + -0.0 919,765 + macB b0879 0.10 +1.0 919,979 + macB b0879 0.21 +0.7 919,979 + macB b0879 0.21 -0.0 919,994 - macB b0879 0.22 +0.5 919,994 - macB b0879 0.22 -0.8 920,012 + -1.0 920,023 + macB b0879 0.23 +1.3 920,068 - macB b0879 0.26 -0.2 920,199 - macB b0879 0.32 -0.3 920,267 + macB b0879 0.36 +0.6 920,415 - macB b0879 0.43 +0.5 920,443 + macB b0879 0.45 +1.0 920,458 - macB b0879 0.46 +0.4 920,459 + macB b0879 0.46 +0.1 920,459 + macB b0879 0.46 -1.1 920,712 - macB b0879 0.59 +0.3 920,767 - macB b0879 0.61 -0.3 920,849 + macB b0879 0.66 -0.0 920,979 + macB b0879 0.72 -0.4 921,004 + macB b0879 0.74 +0.1 921,164 + macB b0879 0.82 -0.2 921,169 + macB b0879 0.82 +0.1 921,254 - macB b0879 0.86 -0.2 921,254 - macB b0879 0.86 +0.7 921,271 + macB b0879 0.87 -1.0 921,298 + macB b0879 0.89 +0.2 921,298 + macB b0879 0.89 +2.0 921,790 + cspD b0880 0.89 -0.2 921,790 + cspD b0880 0.89 -0.2 921,956 - +1.4 921,956 - +0.1 922,042 + -0.6 922,042 + -0.5 922,055 + +0.2 922,069 + -0.3 922,091 - -1.3 922,103 + -0.6 922,124 + +0.7 922,246 - clpS b0881 0.34 +0.3 922,417 + clpS b0881 0.88 -0.8 922,435 - +1.0
Or see this region's nucleotide sequence