Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybdL and ybdM are separated by 0 nucleotides ybdM and ybdN overlap by 28 nucleotides ybdN and ybdO are separated by 146 nucleotides
b0600: ybdL - putative aminotransferase (NCBI), at 632,809 to 633,969
ybdL
b0601: ybdM - hypothetical protein (NCBI), at 633,970 to 634,599
ybdM
b0602: ybdN - hypothetical protein (NCBI), at 634,572 to 635,792
ybdN
b0603: ybdO - predicted DNA-binding transcriptional regulator (NCBI), at 635,939 to 636,841
ybdO
Position (kb) 634
635
636 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 633.572 kb on + strand, within ybdL at 633.587 kb on + strand, within ybdL at 633.597 kb on - strand, within ybdL at 633.717 kb on - strand, within ybdL at 633.825 kb on + strand, within ybdL at 633.853 kb on - strand, within ybdL at 633.970 kb on + strand at 634.194 kb on + strand, within ybdM at 634.206 kb on + strand, within ybdM at 634.214 kb on - strand, within ybdM at 634.214 kb on - strand, within ybdM at 634.214 kb on - strand, within ybdM at 634.214 kb on - strand, within ybdM at 634.214 kb on - strand, within ybdM at 634.309 kb on + strand, within ybdM at 634.335 kb on - strand, within ybdM at 634.335 kb on - strand, within ybdM at 634.337 kb on - strand, within ybdM at 634.464 kb on - strand, within ybdM at 634.477 kb on - strand, within ybdM at 634.486 kb on - strand, within ybdM at 634.486 kb on - strand, within ybdM at 634.593 kb on + strand at 634.672 kb on + strand at 634.687 kb on + strand at 634.720 kb on - strand, within ybdN at 634.963 kb on + strand, within ybdN at 634.977 kb on + strand, within ybdN at 635.018 kb on + strand, within ybdN at 635.018 kb on + strand, within ybdN at 635.039 kb on - strand, within ybdN at 635.132 kb on + strand, within ybdN at 635.140 kb on - strand, within ybdN at 635.140 kb on - strand, within ybdN at 635.298 kb on - strand, within ybdN at 635.431 kb on - strand, within ybdN at 635.437 kb on - strand, within ybdN at 635.457 kb on - strand, within ybdN at 635.475 kb on + strand, within ybdN at 635.500 kb on + strand, within ybdN at 635.505 kb on + strand, within ybdN at 635.505 kb on + strand, within ybdN at 635.542 kb on + strand, within ybdN at 635.545 kb on - strand, within ybdN at 635.545 kb on - strand, within ybdN at 635.601 kb on + strand, within ybdN at 635.604 kb on - strand, within ybdN at 635.700 kb on + strand at 635.700 kb on + strand at 635.705 kb on + strand at 635.705 kb on + strand at 635.709 kb on + strand at 635.709 kb on + strand at 635.709 kb on + strand at 635.709 kb on + strand at 635.709 kb on - strand at 635.711 kb on + strand at 635.711 kb on + strand at 635.715 kb on + strand at 635.717 kb on - strand at 635.723 kb on + strand at 635.723 kb on + strand at 635.723 kb on + strand at 635.730 kb on + strand at 635.730 kb on + strand at 635.731 kb on - strand at 635.734 kb on + strand at 635.734 kb on + strand at 635.734 kb on + strand at 635.743 kb on + strand at 635.743 kb on + strand at 635.792 kb on + strand at 635.792 kb on + strand at 635.804 kb on + strand at 635.808 kb on + strand at 635.810 kb on + strand at 635.812 kb on + strand at 635.812 kb on + strand at 635.812 kb on + strand at 635.813 kb on + strand at 635.813 kb on + strand at 635.813 kb on + strand at 635.820 kb on - strand at 635.826 kb on + strand at 635.851 kb on + strand at 635.861 kb on + strand at 635.861 kb on + strand at 636.350 kb on - strand, within ybdO at 636.360 kb on - strand, within ybdO at 636.360 kb on - strand, within ybdO at 636.500 kb on + strand, within ybdO
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 633,572 + ybdL b0600 0.66 -0.4 633,587 + ybdL b0600 0.67 -0.1 633,597 - ybdL b0600 0.68 -0.9 633,717 - ybdL b0600 0.78 +0.3 633,825 + ybdL b0600 0.88 -1.0 633,853 - ybdL b0600 0.90 -0.0 633,970 + -0.2 634,194 + ybdM b0601 0.36 +0.2 634,206 + ybdM b0601 0.37 +0.3 634,214 - ybdM b0601 0.39 +0.7 634,214 - ybdM b0601 0.39 -1.2 634,214 - ybdM b0601 0.39 -0.1 634,214 - ybdM b0601 0.39 -0.6 634,214 - ybdM b0601 0.39 -1.3 634,309 + ybdM b0601 0.54 -0.2 634,335 - ybdM b0601 0.58 +0.0 634,335 - ybdM b0601 0.58 +1.0 634,337 - ybdM b0601 0.58 -0.2 634,464 - ybdM b0601 0.78 +0.7 634,477 - ybdM b0601 0.80 +0.3 634,486 - ybdM b0601 0.82 -0.3 634,486 - ybdM b0601 0.82 +1.8 634,593 + -0.1 634,672 + -0.3 634,687 + +2.3 634,720 - ybdN b0602 0.12 +0.6 634,963 + ybdN b0602 0.32 +1.0 634,977 + ybdN b0602 0.33 +0.0 635,018 + ybdN b0602 0.37 -1.3 635,018 + ybdN b0602 0.37 +0.2 635,039 - ybdN b0602 0.38 +1.4 635,132 + ybdN b0602 0.46 +0.7 635,140 - ybdN b0602 0.47 +0.2 635,140 - ybdN b0602 0.47 +1.0 635,298 - ybdN b0602 0.59 -0.2 635,431 - ybdN b0602 0.70 +0.4 635,437 - ybdN b0602 0.71 +0.1 635,457 - ybdN b0602 0.72 +1.4 635,475 + ybdN b0602 0.74 +0.4 635,500 + ybdN b0602 0.76 -1.1 635,505 + ybdN b0602 0.76 +1.8 635,505 + ybdN b0602 0.76 +1.3 635,542 + ybdN b0602 0.79 -0.6 635,545 - ybdN b0602 0.80 -2.0 635,545 - ybdN b0602 0.80 -1.8 635,601 + ybdN b0602 0.84 -0.4 635,604 - ybdN b0602 0.85 -0.4 635,700 + +0.4 635,700 + -0.3 635,705 + +0.0 635,705 + -0.6 635,709 + -0.9 635,709 + +0.0 635,709 + +1.2 635,709 + +1.0 635,709 - +0.1 635,711 + +1.0 635,711 + +0.4 635,715 + -0.6 635,717 - +0.1 635,723 + +0.0 635,723 + -0.6 635,723 + +0.8 635,730 + -0.1 635,730 + +0.4 635,731 - +0.3 635,734 + +1.3 635,734 + +1.6 635,734 + +1.0 635,743 + -0.4 635,743 + +0.7 635,792 + -0.6 635,792 + +0.1 635,804 + -0.2 635,808 + +0.6 635,810 + +0.3 635,812 + +1.4 635,812 + +0.0 635,812 + -1.3 635,813 + +1.0 635,813 + -1.0 635,813 + -1.6 635,820 - -0.3 635,826 + -2.8 635,851 + +0.5 635,861 + +2.3 635,861 + +0.5 636,350 - ybdO b0603 0.46 -0.4 636,360 - ybdO b0603 0.47 -1.3 636,360 - ybdO b0603 0.47 -2.3 636,500 + ybdO b0603 0.62 +0.9
Or see this region's nucleotide sequence