Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybdL and ybdM are separated by 0 nucleotides ybdM and ybdN overlap by 28 nucleotides
b0600: ybdL - putative aminotransferase (NCBI), at 632,809 to 633,969
ybdL
b0601: ybdM - hypothetical protein (NCBI), at 633,970 to 634,599
ybdM
b0602: ybdN - hypothetical protein (NCBI), at 634,572 to 635,792
ybdN
Position (kb) 633
634
635 Strain fitness (log2 ratio) -2
-1
0
1
2 at 633.223 kb on + strand, within ybdL at 633.228 kb on + strand, within ybdL at 633.228 kb on + strand, within ybdL at 633.228 kb on - strand, within ybdL at 633.320 kb on - strand, within ybdL at 633.322 kb on - strand, within ybdL at 633.327 kb on - strand, within ybdL at 633.351 kb on - strand, within ybdL at 633.418 kb on + strand, within ybdL at 633.418 kb on - strand, within ybdL at 633.418 kb on - strand, within ybdL at 633.442 kb on - strand, within ybdL at 633.442 kb on - strand, within ybdL at 633.541 kb on - strand, within ybdL at 633.551 kb on - strand, within ybdL at 633.570 kb on - strand, within ybdL at 633.572 kb on + strand, within ybdL at 633.587 kb on + strand, within ybdL at 633.597 kb on - strand, within ybdL at 633.717 kb on - strand, within ybdL at 633.825 kb on + strand, within ybdL at 633.853 kb on - strand, within ybdL at 633.970 kb on + strand at 634.194 kb on + strand, within ybdM at 634.206 kb on + strand, within ybdM at 634.214 kb on - strand, within ybdM at 634.214 kb on - strand, within ybdM at 634.214 kb on - strand, within ybdM at 634.214 kb on - strand, within ybdM at 634.214 kb on - strand, within ybdM at 634.309 kb on + strand, within ybdM at 634.335 kb on - strand, within ybdM at 634.335 kb on - strand, within ybdM at 634.337 kb on - strand, within ybdM at 634.464 kb on - strand, within ybdM at 634.477 kb on - strand, within ybdM at 634.486 kb on - strand, within ybdM at 634.486 kb on - strand, within ybdM at 634.593 kb on + strand at 634.672 kb on + strand at 634.687 kb on + strand at 634.720 kb on - strand, within ybdN at 634.963 kb on + strand, within ybdN at 634.977 kb on + strand, within ybdN at 635.018 kb on + strand, within ybdN at 635.018 kb on + strand, within ybdN at 635.039 kb on - strand, within ybdN at 635.132 kb on + strand, within ybdN at 635.140 kb on - strand, within ybdN at 635.140 kb on - strand, within ybdN at 635.298 kb on - strand, within ybdN at 635.431 kb on - strand, within ybdN at 635.437 kb on - strand, within ybdN at 635.457 kb on - strand, within ybdN at 635.475 kb on + strand, within ybdN at 635.500 kb on + strand, within ybdN at 635.505 kb on + strand, within ybdN at 635.505 kb on + strand, within ybdN at 635.542 kb on + strand, within ybdN at 635.545 kb on - strand, within ybdN at 635.545 kb on - strand, within ybdN
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 633,223 + ybdL b0600 0.36 +0.1 633,228 + ybdL b0600 0.36 -2.6 633,228 + ybdL b0600 0.36 +2.0 633,228 - ybdL b0600 0.36 +0.3 633,320 - ybdL b0600 0.44 -0.3 633,322 - ybdL b0600 0.44 +0.3 633,327 - ybdL b0600 0.45 +0.4 633,351 - ybdL b0600 0.47 +0.6 633,418 + ybdL b0600 0.52 +1.6 633,418 - ybdL b0600 0.52 -0.2 633,418 - ybdL b0600 0.52 -0.9 633,442 - ybdL b0600 0.55 +0.3 633,442 - ybdL b0600 0.55 -1.3 633,541 - ybdL b0600 0.63 +0.2 633,551 - ybdL b0600 0.64 -0.6 633,570 - ybdL b0600 0.66 +0.6 633,572 + ybdL b0600 0.66 -0.4 633,587 + ybdL b0600 0.67 -0.1 633,597 - ybdL b0600 0.68 -0.9 633,717 - ybdL b0600 0.78 +0.3 633,825 + ybdL b0600 0.88 -1.0 633,853 - ybdL b0600 0.90 -0.0 633,970 + -0.2 634,194 + ybdM b0601 0.36 +0.2 634,206 + ybdM b0601 0.37 +0.3 634,214 - ybdM b0601 0.39 +0.7 634,214 - ybdM b0601 0.39 -1.2 634,214 - ybdM b0601 0.39 -0.1 634,214 - ybdM b0601 0.39 -0.6 634,214 - ybdM b0601 0.39 -1.3 634,309 + ybdM b0601 0.54 -0.2 634,335 - ybdM b0601 0.58 +0.0 634,335 - ybdM b0601 0.58 +1.0 634,337 - ybdM b0601 0.58 -0.2 634,464 - ybdM b0601 0.78 +0.7 634,477 - ybdM b0601 0.80 +0.3 634,486 - ybdM b0601 0.82 -0.3 634,486 - ybdM b0601 0.82 +1.8 634,593 + -0.1 634,672 + -0.3 634,687 + +2.3 634,720 - ybdN b0602 0.12 +0.6 634,963 + ybdN b0602 0.32 +1.0 634,977 + ybdN b0602 0.33 +0.0 635,018 + ybdN b0602 0.37 -1.3 635,018 + ybdN b0602 0.37 +0.2 635,039 - ybdN b0602 0.38 +1.4 635,132 + ybdN b0602 0.46 +0.7 635,140 - ybdN b0602 0.47 +0.2 635,140 - ybdN b0602 0.47 +1.0 635,298 - ybdN b0602 0.59 -0.2 635,431 - ybdN b0602 0.70 +0.4 635,437 - ybdN b0602 0.71 +0.1 635,457 - ybdN b0602 0.72 +1.4 635,475 + ybdN b0602 0.74 +0.4 635,500 + ybdN b0602 0.76 -1.1 635,505 + ybdN b0602 0.76 +1.8 635,505 + ybdN b0602 0.76 +1.3 635,542 + ybdN b0602 0.79 -0.6 635,545 - ybdN b0602 0.80 -2.0 635,545 - ybdN b0602 0.80 -1.8
Or see this region's nucleotide sequence