Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt araJ and sbcC are separated by 125 nucleotides sbcC and sbcD overlap by 4 nucleotides
b0396: araJ - involved in either transport or processing of arabinose polymers (VIMSS), at 410,521 to 411,705
araJ
b0397: sbcC - exonuclease, dsDNA, ATP-dependent (NCBI), at 411,831 to 414,977
sbcC
b0398: sbcD - exonuclease, dsDNA, ATP-dependent (NCBI), at 414,974 to 416,176
sbcD
Position (kb) 411
412
413
414
415 Strain fitness (log2 ratio) -2
-1
0
1
2 at 410.869 kb on - strand, within araJ at 410.869 kb on - strand, within araJ at 410.871 kb on + strand, within araJ at 410.880 kb on - strand, within araJ at 410.880 kb on - strand, within araJ at 410.882 kb on + strand, within araJ at 410.882 kb on + strand, within araJ at 410.890 kb on - strand, within araJ at 410.890 kb on - strand, within araJ at 410.898 kb on - strand, within araJ at 410.898 kb on - strand, within araJ at 410.906 kb on - strand, within araJ at 410.921 kb on - strand, within araJ at 410.921 kb on - strand, within araJ at 410.923 kb on - strand, within araJ at 410.923 kb on - strand, within araJ at 410.961 kb on - strand, within araJ at 410.964 kb on + strand, within araJ at 410.964 kb on + strand, within araJ at 410.964 kb on + strand, within araJ at 410.972 kb on - strand, within araJ at 410.972 kb on - strand, within araJ at 410.973 kb on - strand, within araJ at 410.973 kb on - strand, within araJ at 410.983 kb on - strand, within araJ at 410.985 kb on + strand, within araJ at 411.030 kb on + strand, within araJ at 411.037 kb on - strand, within araJ at 411.037 kb on - strand, within araJ at 411.037 kb on - strand, within araJ at 411.037 kb on - strand, within araJ at 411.041 kb on + strand, within araJ at 411.041 kb on + strand, within araJ at 411.044 kb on - strand, within araJ at 411.044 kb on - strand, within araJ at 411.049 kb on + strand, within araJ at 411.063 kb on + strand, within araJ at 411.073 kb on + strand, within araJ at 411.079 kb on - strand, within araJ at 411.095 kb on + strand, within araJ at 411.101 kb on - strand, within araJ at 411.101 kb on - strand, within araJ at 411.105 kb on + strand, within araJ at 411.113 kb on - strand, within araJ at 411.113 kb on - strand, within araJ at 411.113 kb on - strand, within araJ at 411.113 kb on - strand, within araJ at 411.141 kb on + strand, within araJ at 411.141 kb on + strand, within araJ at 411.141 kb on + strand, within araJ at 411.188 kb on + strand, within araJ at 411.211 kb on - strand, within araJ at 411.211 kb on - strand, within araJ at 411.230 kb on - strand, within araJ at 411.273 kb on - strand, within araJ at 411.273 kb on - strand, within araJ at 411.285 kb on - strand, within araJ at 411.285 kb on - strand, within araJ at 411.294 kb on - strand, within araJ at 411.417 kb on - strand, within araJ at 411.441 kb on + strand, within araJ at 411.441 kb on + strand, within araJ at 411.503 kb on - strand, within araJ at 411.561 kb on + strand, within araJ at 411.663 kb on + strand at 411.663 kb on + strand at 411.736 kb on + strand at 411.791 kb on + strand at 411.866 kb on + strand at 411.927 kb on + strand at 411.935 kb on - strand at 412.023 kb on + strand at 412.069 kb on + strand at 412.187 kb on + strand, within sbcC at 412.187 kb on + strand, within sbcC at 412.205 kb on + strand, within sbcC at 412.205 kb on + strand, within sbcC at 412.315 kb on - strand, within sbcC at 412.315 kb on - strand, within sbcC at 412.331 kb on + strand, within sbcC at 412.331 kb on + strand, within sbcC at 412.341 kb on + strand, within sbcC at 412.341 kb on + strand, within sbcC at 412.481 kb on - strand, within sbcC at 412.485 kb on + strand, within sbcC at 412.636 kb on - strand, within sbcC at 412.638 kb on + strand, within sbcC at 412.638 kb on + strand, within sbcC at 412.643 kb on + strand, within sbcC at 412.685 kb on + strand, within sbcC at 412.685 kb on + strand, within sbcC at 412.796 kb on - strand, within sbcC at 412.859 kb on - strand, within sbcC at 412.932 kb on + strand, within sbcC at 412.932 kb on + strand, within sbcC at 413.124 kb on - strand, within sbcC at 413.180 kb on + strand, within sbcC at 413.209 kb on + strand, within sbcC at 413.279 kb on - strand, within sbcC at 413.337 kb on + strand, within sbcC at 413.387 kb on - strand, within sbcC at 413.387 kb on - strand, within sbcC at 413.438 kb on - strand, within sbcC at 413.458 kb on + strand, within sbcC at 413.458 kb on + strand, within sbcC at 413.473 kb on + strand, within sbcC at 413.473 kb on + strand, within sbcC at 413.712 kb on + strand, within sbcC at 413.712 kb on + strand, within sbcC at 413.737 kb on - strand, within sbcC at 414.176 kb on + strand, within sbcC at 414.375 kb on + strand, within sbcC at 414.380 kb on + strand, within sbcC at 414.380 kb on + strand, within sbcC at 414.413 kb on - strand, within sbcC at 414.476 kb on + strand, within sbcC at 414.517 kb on - strand, within sbcC at 414.552 kb on - strand, within sbcC at 414.552 kb on - strand, within sbcC at 414.734 kb on + strand at 414.808 kb on + strand at 414.808 kb on + strand at 414.839 kb on + strand at 415.007 kb on - strand at 415.073 kb on - strand at 415.292 kb on + strand, within sbcD at 415.292 kb on + strand, within sbcD at 415.338 kb on + strand, within sbcD at 415.338 kb on + strand, within sbcD at 415.338 kb on + strand, within sbcD at 415.357 kb on - strand, within sbcD at 415.357 kb on - strand, within sbcD at 415.461 kb on + strand, within sbcD at 415.461 kb on + strand, within sbcD at 415.518 kb on + strand, within sbcD at 415.518 kb on + strand, within sbcD at 415.598 kb on + strand, within sbcD at 415.602 kb on + strand, within sbcD at 415.679 kb on + strand, within sbcD at 415.680 kb on + strand, within sbcD at 415.893 kb on - strand, within sbcD
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 410,869 - araJ b0396 0.29 +1.3 410,869 - araJ b0396 0.29 -0.6 410,871 + araJ b0396 0.30 +0.6 410,880 - araJ b0396 0.30 +0.6 410,880 - araJ b0396 0.30 +0.2 410,882 + araJ b0396 0.30 -0.3 410,882 + araJ b0396 0.30 +1.0 410,890 - araJ b0396 0.31 +0.6 410,890 - araJ b0396 0.31 -0.6 410,898 - araJ b0396 0.32 -0.6 410,898 - araJ b0396 0.32 -0.6 410,906 - araJ b0396 0.32 -0.8 410,921 - araJ b0396 0.34 -0.4 410,921 - araJ b0396 0.34 -1.8 410,923 - araJ b0396 0.34 -0.6 410,923 - araJ b0396 0.34 -0.6 410,961 - araJ b0396 0.37 +0.3 410,964 + araJ b0396 0.37 +1.3 410,964 + araJ b0396 0.37 -0.0 410,964 + araJ b0396 0.37 -0.0 410,972 - araJ b0396 0.38 +0.6 410,972 - araJ b0396 0.38 +1.0 410,973 - araJ b0396 0.38 -0.3 410,973 - araJ b0396 0.38 +1.0 410,983 - araJ b0396 0.39 -0.7 410,985 + araJ b0396 0.39 +1.0 411,030 + araJ b0396 0.43 +0.6 411,037 - araJ b0396 0.44 -0.0 411,037 - araJ b0396 0.44 -0.5 411,037 - araJ b0396 0.44 +0.7 411,037 - araJ b0396 0.44 -0.3 411,041 + araJ b0396 0.44 -0.4 411,041 + araJ b0396 0.44 +0.5 411,044 - araJ b0396 0.44 +0.6 411,044 - araJ b0396 0.44 +0.1 411,049 + araJ b0396 0.45 +1.0 411,063 + araJ b0396 0.46 +0.7 411,073 + araJ b0396 0.47 +0.2 411,079 - araJ b0396 0.47 -0.8 411,095 + araJ b0396 0.48 +0.6 411,101 - araJ b0396 0.49 -0.6 411,101 - araJ b0396 0.49 -0.6 411,105 + araJ b0396 0.49 +0.1 411,113 - araJ b0396 0.50 +1.0 411,113 - araJ b0396 0.50 +1.0 411,113 - araJ b0396 0.50 +0.5 411,113 - araJ b0396 0.50 -0.0 411,141 + araJ b0396 0.52 +0.3 411,141 + araJ b0396 0.52 -0.6 411,141 + araJ b0396 0.52 +0.2 411,188 + araJ b0396 0.56 -0.4 411,211 - araJ b0396 0.58 +0.7 411,211 - araJ b0396 0.58 +0.2 411,230 - araJ b0396 0.60 -0.8 411,273 - araJ b0396 0.63 -0.7 411,273 - araJ b0396 0.63 -0.1 411,285 - araJ b0396 0.64 -0.0 411,285 - araJ b0396 0.64 +0.5 411,294 - araJ b0396 0.65 +2.0 411,417 - araJ b0396 0.76 -0.3 411,441 + araJ b0396 0.78 -0.0 411,441 + araJ b0396 0.78 +1.6 411,503 - araJ b0396 0.83 +1.3 411,561 + araJ b0396 0.88 -0.0 411,663 + -0.0 411,663 + -1.0 411,736 + +1.0 411,791 + +0.4 411,866 + +1.3 411,927 + +0.2 411,935 - -0.0 412,023 + -1.0 412,069 + -0.8 412,187 + sbcC b0397 0.11 +1.5 412,187 + sbcC b0397 0.11 +1.0 412,205 + sbcC b0397 0.12 +1.0 412,205 + sbcC b0397 0.12 +2.0 412,315 - sbcC b0397 0.15 +0.4 412,315 - sbcC b0397 0.15 +1.8 412,331 + sbcC b0397 0.16 +1.0 412,331 + sbcC b0397 0.16 +0.3 412,341 + sbcC b0397 0.16 -1.4 412,341 + sbcC b0397 0.16 -0.3 412,481 - sbcC b0397 0.21 +0.4 412,485 + sbcC b0397 0.21 -1.0 412,636 - sbcC b0397 0.26 -0.5 412,638 + sbcC b0397 0.26 -1.0 412,638 + sbcC b0397 0.26 +0.3 412,643 + sbcC b0397 0.26 +1.4 412,685 + sbcC b0397 0.27 +0.5 412,685 + sbcC b0397 0.27 +0.3 412,796 - sbcC b0397 0.31 +1.0 412,859 - sbcC b0397 0.33 -0.2 412,932 + sbcC b0397 0.35 +0.4 412,932 + sbcC b0397 0.35 -1.0 413,124 - sbcC b0397 0.41 +0.4 413,180 + sbcC b0397 0.43 +0.4 413,209 + sbcC b0397 0.44 +1.3 413,279 - sbcC b0397 0.46 +0.0 413,337 + sbcC b0397 0.48 +0.0 413,387 - sbcC b0397 0.49 -0.7 413,387 - sbcC b0397 0.49 +1.5 413,438 - sbcC b0397 0.51 +1.1 413,458 + sbcC b0397 0.52 +0.0 413,458 + sbcC b0397 0.52 -0.1 413,473 + sbcC b0397 0.52 +0.2 413,473 + sbcC b0397 0.52 +1.0 413,712 + sbcC b0397 0.60 +1.3 413,712 + sbcC b0397 0.60 +0.4 413,737 - sbcC b0397 0.61 +0.4 414,176 + sbcC b0397 0.75 +0.1 414,375 + sbcC b0397 0.81 -0.8 414,380 + sbcC b0397 0.81 +0.7 414,380 + sbcC b0397 0.81 +0.1 414,413 - sbcC b0397 0.82 +0.8 414,476 + sbcC b0397 0.84 +0.4 414,517 - sbcC b0397 0.85 +1.0 414,552 - sbcC b0397 0.86 -1.3 414,552 - sbcC b0397 0.86 +0.0 414,734 + -0.7 414,808 + +0.4 414,808 + +0.0 414,839 + -0.5 415,007 - -0.5 415,073 - +0.2 415,292 + sbcD b0398 0.26 -1.0 415,292 + sbcD b0398 0.26 -2.2 415,338 + sbcD b0398 0.30 +0.3 415,338 + sbcD b0398 0.30 +1.0 415,338 + sbcD b0398 0.30 -2.3 415,357 - sbcD b0398 0.32 -0.6 415,357 - sbcD b0398 0.32 +0.0 415,461 + sbcD b0398 0.40 +0.2 415,461 + sbcD b0398 0.40 +0.5 415,518 + sbcD b0398 0.45 +0.7 415,518 + sbcD b0398 0.45 +0.0 415,598 + sbcD b0398 0.52 -0.5 415,602 + sbcD b0398 0.52 -0.6 415,679 + sbcD b0398 0.59 -0.3 415,680 + sbcD b0398 0.59 -0.3 415,893 - sbcD b0398 0.76 -1.1
Or see this region's nucleotide sequence