Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5073 and PfGW456L13_5074 are separated by 11 nucleotides PfGW456L13_5074 and PfGW456L13_5075 overlap by 1 nucleotides
PfGW456L13_5073 - PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69), at 5,657,784 to 5,659,523
_5073
PfGW456L13_5074 - 1-phosphofructokinase (EC 2.7.1.56), at 5,659,535 to 5,660,473
_5074
PfGW456L13_5075 - Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 5,660,473 to 5,663,334
_5075
Position (kb) 5659
5660
5661 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5658.613 kb on + strand, within PfGW456L13_5073 at 5658.614 kb on - strand, within PfGW456L13_5073 at 5658.614 kb on - strand, within PfGW456L13_5073 at 5658.614 kb on - strand, within PfGW456L13_5073 at 5658.622 kb on + strand, within PfGW456L13_5073 at 5658.622 kb on + strand, within PfGW456L13_5073 at 5658.622 kb on + strand, within PfGW456L13_5073 at 5658.622 kb on + strand, within PfGW456L13_5073 at 5658.622 kb on + strand, within PfGW456L13_5073 at 5658.622 kb on + strand at 5658.622 kb on + strand, within PfGW456L13_5073 at 5658.622 kb on + strand, within PfGW456L13_5073 at 5658.623 kb on - strand, within PfGW456L13_5073 at 5658.623 kb on - strand, within PfGW456L13_5073 at 5658.623 kb on - strand, within PfGW456L13_5073 at 5658.623 kb on - strand, within PfGW456L13_5073 at 5658.623 kb on - strand, within PfGW456L13_5073 at 5658.623 kb on - strand, within PfGW456L13_5073 at 5658.623 kb on - strand, within PfGW456L13_5073 at 5658.623 kb on - strand, within PfGW456L13_5073 at 5658.803 kb on + strand, within PfGW456L13_5073 at 5658.804 kb on - strand, within PfGW456L13_5073 at 5658.804 kb on - strand, within PfGW456L13_5073 at 5658.805 kb on + strand, within PfGW456L13_5073 at 5658.805 kb on + strand, within PfGW456L13_5073 at 5658.806 kb on - strand, within PfGW456L13_5073 at 5658.806 kb on - strand, within PfGW456L13_5073 at 5658.806 kb on - strand, within PfGW456L13_5073 at 5658.806 kb on - strand, within PfGW456L13_5073 at 5658.908 kb on + strand, within PfGW456L13_5073 at 5658.909 kb on - strand, within PfGW456L13_5073 at 5658.934 kb on + strand, within PfGW456L13_5073 at 5658.934 kb on + strand, within PfGW456L13_5073 at 5659.073 kb on - strand, within PfGW456L13_5073 at 5659.073 kb on - strand, within PfGW456L13_5073 at 5659.516 kb on - strand at 5659.516 kb on - strand at 5659.536 kb on + strand at 5659.536 kb on + strand at 5659.536 kb on + strand at 5659.537 kb on - strand at 5659.537 kb on - strand at 5659.537 kb on - strand at 5659.537 kb on - strand at 5660.197 kb on + strand, within PfGW456L13_5074 at 5660.458 kb on + strand at 5660.462 kb on + strand at 5660.462 kb on + strand at 5660.462 kb on + strand at 5660.691 kb on + strand at 5660.691 kb on + strand at 5660.692 kb on - strand at 5660.804 kb on + strand, within PfGW456L13_5075 at 5660.805 kb on - strand, within PfGW456L13_5075 at 5660.805 kb on - strand, within PfGW456L13_5075 at 5661.202 kb on + strand, within PfGW456L13_5075
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 5,658,613 + PfGW456L13_5073 0.48 -0.7 5,658,614 - PfGW456L13_5073 0.48 -0.8 5,658,614 - PfGW456L13_5073 0.48 +0.0 5,658,614 - PfGW456L13_5073 0.48 -1.4 5,658,622 + PfGW456L13_5073 0.48 -1.0 5,658,622 + PfGW456L13_5073 0.48 -0.7 5,658,622 + PfGW456L13_5073 0.48 +1.1 5,658,622 + PfGW456L13_5073 0.48 -0.2 5,658,622 + PfGW456L13_5073 0.48 -0.3 5,658,622 + +0.0 5,658,622 + PfGW456L13_5073 0.48 +0.8 5,658,622 + PfGW456L13_5073 0.48 +1.1 5,658,623 - PfGW456L13_5073 0.48 +0.3 5,658,623 - PfGW456L13_5073 0.48 +0.8 5,658,623 - PfGW456L13_5073 0.48 -0.1 5,658,623 - PfGW456L13_5073 0.48 -2.1 5,658,623 - PfGW456L13_5073 0.48 +0.4 5,658,623 - PfGW456L13_5073 0.48 -3.3 5,658,623 - PfGW456L13_5073 0.48 +0.3 5,658,623 - PfGW456L13_5073 0.48 -0.2 5,658,803 + PfGW456L13_5073 0.59 +1.5 5,658,804 - PfGW456L13_5073 0.59 +0.9 5,658,804 - PfGW456L13_5073 0.59 +0.3 5,658,805 + PfGW456L13_5073 0.59 +0.1 5,658,805 + PfGW456L13_5073 0.59 -2.8 5,658,806 - PfGW456L13_5073 0.59 +0.3 5,658,806 - PfGW456L13_5073 0.59 -1.5 5,658,806 - PfGW456L13_5073 0.59 +0.9 5,658,806 - PfGW456L13_5073 0.59 -0.3 5,658,908 + PfGW456L13_5073 0.65 -2.0 5,658,909 - PfGW456L13_5073 0.65 -1.1 5,658,934 + PfGW456L13_5073 0.66 -0.2 5,658,934 + PfGW456L13_5073 0.66 -0.2 5,659,073 - PfGW456L13_5073 0.74 +0.8 5,659,073 - PfGW456L13_5073 0.74 -0.1 5,659,516 - +0.5 5,659,516 - -2.8 5,659,536 + +0.6 5,659,536 + +0.6 5,659,536 + -0.6 5,659,537 - -0.6 5,659,537 - +0.6 5,659,537 - +0.9 5,659,537 - +0.8 5,660,197 + PfGW456L13_5074 0.71 -0.9 5,660,458 + -1.9 5,660,462 + +1.0 5,660,462 + +2.4 5,660,462 + +0.9 5,660,691 + +0.9 5,660,691 + -0.4 5,660,692 - +0.6 5,660,804 + PfGW456L13_5075 0.12 +0.4 5,660,805 - PfGW456L13_5075 0.12 -0.8 5,660,805 - PfGW456L13_5075 0.12 +2.2 5,661,202 + PfGW456L13_5075 0.25 -1.4
Or see this region's nucleotide sequence