Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4512 and PfGW456L13_4513 are separated by 76 nucleotides PfGW456L13_4513 and PfGW456L13_4514 are separated by 178 nucleotides
PfGW456L13_4512 - Exported zinc metalloprotease YfgC precursor, at 5,044,075 to 5,045,508
_4512
PfGW456L13_4513 - HtrA protease/chaperone protein, at 5,045,585 to 5,047,009
_4513
PfGW456L13_4514 - Sigma factor RpoE negative regulatory protein RseB precursor, at 5,047,188 to 5,048,147
_4514
Position (kb) 5045
5046
5047
5048 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5044.699 kb on + strand, within PfGW456L13_4512 at 5044.754 kb on - strand, within PfGW456L13_4512 at 5044.892 kb on + strand, within PfGW456L13_4512 at 5044.903 kb on + strand, within PfGW456L13_4512 at 5044.904 kb on - strand, within PfGW456L13_4512 at 5044.904 kb on - strand, within PfGW456L13_4512 at 5045.077 kb on + strand, within PfGW456L13_4512 at 5045.077 kb on + strand, within PfGW456L13_4512 at 5045.078 kb on - strand, within PfGW456L13_4512 at 5045.078 kb on - strand, within PfGW456L13_4512 at 5045.078 kb on - strand, within PfGW456L13_4512 at 5045.113 kb on - strand, within PfGW456L13_4512 at 5045.161 kb on + strand, within PfGW456L13_4512 at 5045.161 kb on + strand, within PfGW456L13_4512 at 5045.162 kb on - strand, within PfGW456L13_4512 at 5045.174 kb on - strand, within PfGW456L13_4512 at 5045.174 kb on - strand, within PfGW456L13_4512 at 5045.287 kb on + strand, within PfGW456L13_4512 at 5045.322 kb on + strand, within PfGW456L13_4512 at 5045.322 kb on + strand, within PfGW456L13_4512 at 5045.323 kb on - strand, within PfGW456L13_4512 at 5045.353 kb on + strand, within PfGW456L13_4512 at 5045.353 kb on + strand, within PfGW456L13_4512 at 5045.375 kb on - strand at 5045.775 kb on - strand, within PfGW456L13_4513 at 5045.775 kb on - strand, within PfGW456L13_4513 at 5045.775 kb on - strand, within PfGW456L13_4513 at 5047.070 kb on - strand at 5047.245 kb on - strand at 5047.254 kb on + strand at 5047.338 kb on - strand, within PfGW456L13_4514 at 5047.408 kb on + strand, within PfGW456L13_4514 at 5047.408 kb on + strand, within PfGW456L13_4514 at 5047.408 kb on + strand, within PfGW456L13_4514 at 5047.408 kb on + strand, within PfGW456L13_4514 at 5047.408 kb on + strand, within PfGW456L13_4514 at 5047.409 kb on - strand, within PfGW456L13_4514 at 5047.409 kb on - strand, within PfGW456L13_4514 at 5047.409 kb on - strand, within PfGW456L13_4514 at 5047.409 kb on - strand, within PfGW456L13_4514 at 5047.409 kb on - strand, within PfGW456L13_4514 at 5047.418 kb on + strand, within PfGW456L13_4514 at 5047.565 kb on + strand, within PfGW456L13_4514 at 5047.566 kb on - strand, within PfGW456L13_4514 at 5047.796 kb on - strand, within PfGW456L13_4514 at 5047.982 kb on + strand, within PfGW456L13_4514 at 5047.983 kb on - strand, within PfGW456L13_4514 at 5047.998 kb on - strand, within PfGW456L13_4514 at 5048.003 kb on + strand, within PfGW456L13_4514
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 5,044,699 + PfGW456L13_4512 0.44 -1.0 5,044,754 - PfGW456L13_4512 0.47 -1.9 5,044,892 + PfGW456L13_4512 0.57 -1.2 5,044,903 + PfGW456L13_4512 0.58 -3.2 5,044,904 - PfGW456L13_4512 0.58 -0.3 5,044,904 - PfGW456L13_4512 0.58 -1.8 5,045,077 + PfGW456L13_4512 0.70 -2.0 5,045,077 + PfGW456L13_4512 0.70 +0.0 5,045,078 - PfGW456L13_4512 0.70 -0.3 5,045,078 - PfGW456L13_4512 0.70 -3.0 5,045,078 - PfGW456L13_4512 0.70 -3.3 5,045,113 - PfGW456L13_4512 0.72 -2.5 5,045,161 + PfGW456L13_4512 0.76 -1.1 5,045,161 + PfGW456L13_4512 0.76 -3.3 5,045,162 - PfGW456L13_4512 0.76 -0.4 5,045,174 - PfGW456L13_4512 0.77 -2.3 5,045,174 - PfGW456L13_4512 0.77 -0.9 5,045,287 + PfGW456L13_4512 0.85 +0.5 5,045,322 + PfGW456L13_4512 0.87 +1.0 5,045,322 + PfGW456L13_4512 0.87 -0.7 5,045,323 - PfGW456L13_4512 0.87 -1.4 5,045,353 + PfGW456L13_4512 0.89 -2.2 5,045,353 + PfGW456L13_4512 0.89 +1.1 5,045,375 - +2.0 5,045,775 - PfGW456L13_4513 0.13 -2.6 5,045,775 - PfGW456L13_4513 0.13 +0.6 5,045,775 - PfGW456L13_4513 0.13 -1.1 5,047,070 - -1.9 5,047,245 - -0.5 5,047,254 + -0.9 5,047,338 - PfGW456L13_4514 0.16 +2.3 5,047,408 + PfGW456L13_4514 0.23 +0.5 5,047,408 + PfGW456L13_4514 0.23 +1.4 5,047,408 + PfGW456L13_4514 0.23 -0.7 5,047,408 + PfGW456L13_4514 0.23 -2.6 5,047,408 + PfGW456L13_4514 0.23 -0.6 5,047,409 - PfGW456L13_4514 0.23 -0.2 5,047,409 - PfGW456L13_4514 0.23 -1.0 5,047,409 - PfGW456L13_4514 0.23 -0.2 5,047,409 - PfGW456L13_4514 0.23 -1.7 5,047,409 - PfGW456L13_4514 0.23 +1.1 5,047,418 + PfGW456L13_4514 0.24 -1.1 5,047,565 + PfGW456L13_4514 0.39 -0.9 5,047,566 - PfGW456L13_4514 0.39 -0.4 5,047,796 - PfGW456L13_4514 0.63 +0.1 5,047,982 + PfGW456L13_4514 0.83 -2.4 5,047,983 - PfGW456L13_4514 0.83 +0.4 5,047,998 - PfGW456L13_4514 0.84 +0.4 5,048,003 + PfGW456L13_4514 0.85 -1.2
Or see this region's nucleotide sequence