Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4218

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4217 and PfGW456L13_4218 are separated by 131 nucleotidesPfGW456L13_4218 and PfGW456L13_4219 are separated by 126 nucleotides PfGW456L13_4217 - Sodium-dependent transporter, at 4,730,046 to 4,731,011 _4217 PfGW456L13_4218 - Quaternary ammonium compound-resistance protein SugE, at 4,731,143 to 4,731,457 _4218 PfGW456L13_4219 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 4,731,584 to 4,733,458 _4219 Position (kb) 4731 4732Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4730.767 kb on - strand, within PfGW456L13_4217at 4730.767 kb on - strand, within PfGW456L13_4217at 4730.949 kb on + strandat 4730.950 kb on - strandat 4731.005 kb on + strandat 4731.005 kb on + strandat 4731.006 kb on - strandat 4731.006 kb on - strandat 4731.006 kb on - strandat 4731.048 kb on - strandat 4731.060 kb on + strandat 4731.060 kb on + strandat 4731.060 kb on + strandat 4731.060 kb on + strandat 4731.060 kb on + strandat 4731.060 kb on + strandat 4731.060 kb on + strandat 4731.060 kb on + strandat 4731.060 kb on + strandat 4731.060 kb on + strandat 4731.060 kb on + strandat 4731.061 kb on - strandat 4731.061 kb on - strandat 4731.061 kb on - strandat 4731.061 kb on - strandat 4731.061 kb on - strandat 4731.061 kb on - strandat 4731.061 kb on - strandat 4731.061 kb on - strandat 4731.061 kb on - strandat 4731.061 kb on - strandat 4731.061 kb on - strandat 4731.062 kb on + strandat 4731.062 kb on + strandat 4731.062 kb on + strandat 4731.062 kb on + strandat 4731.062 kb on + strandat 4731.062 kb on + strandat 4731.062 kb on + strandat 4731.062 kb on + strandat 4731.062 kb on + strandat 4731.062 kb on + strandat 4731.062 kb on + strandat 4731.063 kb on - strandat 4731.063 kb on - strandat 4731.063 kb on - strandat 4731.063 kb on - strandat 4731.105 kb on + strandat 4731.106 kb on - strandat 4731.106 kb on - strandat 4731.206 kb on + strand, within PfGW456L13_4218at 4731.318 kb on - strand, within PfGW456L13_4218at 4731.585 kb on + strandat 4731.841 kb on + strand, within PfGW456L13_4219at 4731.842 kb on - strand, within PfGW456L13_4219at 4731.883 kb on - strand, within PfGW456L13_4219at 4731.912 kb on + strand, within PfGW456L13_4219at 4731.912 kb on + strand, within PfGW456L13_4219at 4731.912 kb on + strand, within PfGW456L13_4219at 4731.912 kb on + strand, within PfGW456L13_4219at 4731.912 kb on + strand, within PfGW456L13_4219at 4731.912 kb on + strand, within PfGW456L13_4219at 4731.912 kb on + strand, within PfGW456L13_4219at 4731.912 kb on + strand, within PfGW456L13_4219at 4731.913 kb on - strand, within PfGW456L13_4219at 4731.913 kb on - strand, within PfGW456L13_4219at 4731.913 kb on - strand, within PfGW456L13_4219at 4731.913 kb on - strand, within PfGW456L13_4219at 4731.913 kb on - strand, within PfGW456L13_4219at 4731.913 kb on - strand, within PfGW456L13_4219at 4731.913 kb on - strand, within PfGW456L13_4219at 4731.913 kb on - strandat 4731.913 kb on - strand, within PfGW456L13_4219at 4731.913 kb on - strand, within PfGW456L13_4219at 4731.913 kb on - strand, within PfGW456L13_4219at 4731.913 kb on - strand, within PfGW456L13_4219at 4731.913 kb on - strand, within PfGW456L13_4219at 4731.913 kb on - strand, within PfGW456L13_4219at 4731.913 kb on - strand, within PfGW456L13_4219at 4731.914 kb on + strand, within PfGW456L13_4219at 4731.914 kb on + strand, within PfGW456L13_4219at 4731.914 kb on + strand, within PfGW456L13_4219at 4731.914 kb on + strand, within PfGW456L13_4219at 4731.914 kb on + strand, within PfGW456L13_4219at 4731.914 kb on + strand, within PfGW456L13_4219at 4731.914 kb on + strand, within PfGW456L13_4219at 4731.914 kb on + strand, within PfGW456L13_4219at 4731.914 kb on + strand, within PfGW456L13_4219at 4731.914 kb on + strand, within PfGW456L13_4219at 4731.915 kb on - strand, within PfGW456L13_4219at 4731.915 kb on - strand, within PfGW456L13_4219at 4731.915 kb on - strand, within PfGW456L13_4219at 4731.915 kb on - strand, within PfGW456L13_4219at 4731.915 kb on - strand, within PfGW456L13_4219at 4731.915 kb on - strand, within PfGW456L13_4219at 4731.993 kb on + strand, within PfGW456L13_4219at 4731.993 kb on + strand, within PfGW456L13_4219at 4731.993 kb on + strand, within PfGW456L13_4219at 4731.993 kb on + strand, within PfGW456L13_4219at 4731.994 kb on - strand, within PfGW456L13_4219at 4731.994 kb on - strand, within PfGW456L13_4219at 4732.002 kb on + strand, within PfGW456L13_4219at 4732.002 kb on + strand, within PfGW456L13_4219at 4732.002 kb on + strand, within PfGW456L13_4219at 4732.002 kb on + strand, within PfGW456L13_4219at 4732.002 kb on + strand, within PfGW456L13_4219at 4732.002 kb on + strand, within PfGW456L13_4219at 4732.002 kb on + strand, within PfGW456L13_4219at 4732.003 kb on - strand, within PfGW456L13_4219at 4732.003 kb on - strand, within PfGW456L13_4219at 4732.003 kb on - strand, within PfGW456L13_4219at 4732.003 kb on - strand, within PfGW456L13_4219at 4732.005 kb on + strand, within PfGW456L13_4219at 4732.005 kb on + strand, within PfGW456L13_4219at 4732.005 kb on + strand, within PfGW456L13_4219at 4732.005 kb on + strand, within PfGW456L13_4219at 4732.005 kb on + strand, within PfGW456L13_4219at 4732.005 kb on + strand, within PfGW456L13_4219at 4732.005 kb on + strand, within PfGW456L13_4219at 4732.005 kb on + strand, within PfGW456L13_4219at 4732.005 kb on + strand, within PfGW456L13_4219at 4732.005 kb on + strand, within PfGW456L13_4219at 4732.005 kb on + strand, within PfGW456L13_4219at 4732.005 kb on + strand, within PfGW456L13_4219at 4732.005 kb on + strand, within PfGW456L13_4219at 4732.006 kb on - strand, within PfGW456L13_4219at 4732.006 kb on - strand, within PfGW456L13_4219at 4732.006 kb on - strand, within PfGW456L13_4219at 4732.006 kb on - strand, within PfGW456L13_4219at 4732.006 kb on - strand, within PfGW456L13_4219at 4732.006 kb on - strand, within PfGW456L13_4219at 4732.137 kb on + strand, within PfGW456L13_4219at 4732.137 kb on + strand, within PfGW456L13_4219at 4732.204 kb on - strand, within PfGW456L13_4219at 4732.204 kb on - strand, within PfGW456L13_4219at 4732.204 kb on - strand, within PfGW456L13_4219at 4732.204 kb on - strand, within PfGW456L13_4219at 4732.204 kb on - strand, within PfGW456L13_4219at 4732.369 kb on + strand, within PfGW456L13_4219at 4732.369 kb on + strand, within PfGW456L13_4219at 4732.389 kb on + strand, within PfGW456L13_4219at 4732.389 kb on + strand, within PfGW456L13_4219at 4732.390 kb on - strand, within PfGW456L13_4219at 4732.390 kb on - strand, within PfGW456L13_4219at 4732.404 kb on + strand, within PfGW456L13_4219at 4732.405 kb on - strand, within PfGW456L13_4219at 4732.405 kb on - strand, within PfGW456L13_4219at 4732.405 kb on - strand, within PfGW456L13_4219at 4732.405 kb on - strand, within PfGW456L13_4219

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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4,730,767 - PfGW456L13_4217 0.75 -0.9
4,730,767 - PfGW456L13_4217 0.75 +0.1
4,730,949 + -0.8
4,730,950 - +0.9
4,731,005 + -1.7
4,731,005 + +0.5
4,731,006 - +1.0
4,731,006 - -1.1
4,731,006 - +1.3
4,731,048 - +1.3
4,731,060 + -0.0
4,731,060 + +0.2
4,731,060 + -2.3
4,731,060 + -0.7
4,731,060 + -0.1
4,731,060 + +0.6
4,731,060 + -2.6
4,731,060 + -0.2
4,731,060 + -2.8
4,731,060 + +0.2
4,731,060 + +0.4
4,731,061 - -0.3
4,731,061 - -0.2
4,731,061 - +0.7
4,731,061 - +2.0
4,731,061 - -0.6
4,731,061 - +0.9
4,731,061 - -1.5
4,731,061 - -0.1
4,731,061 - +0.3
4,731,061 - +1.5
4,731,061 - -1.6
4,731,062 + -0.4
4,731,062 + +0.4
4,731,062 + -0.9
4,731,062 + +0.3
4,731,062 + +0.6
4,731,062 + +0.9
4,731,062 + +0.3
4,731,062 + -2.1
4,731,062 + -0.5
4,731,062 + -0.7
4,731,062 + -0.6
4,731,063 - +1.1
4,731,063 - +0.2
4,731,063 - +0.8
4,731,063 - -0.7
4,731,105 + +0.5
4,731,106 - -0.8
4,731,106 - -2.0
4,731,206 + PfGW456L13_4218 0.20 +1.0
4,731,318 - PfGW456L13_4218 0.56 +0.7
4,731,585 + -0.6
4,731,841 + PfGW456L13_4219 0.14 +0.2
4,731,842 - PfGW456L13_4219 0.14 +0.9
4,731,883 - PfGW456L13_4219 0.16 -2.2
4,731,912 + PfGW456L13_4219 0.17 -0.4
4,731,912 + PfGW456L13_4219 0.17 -0.6
4,731,912 + PfGW456L13_4219 0.17 -0.1
4,731,912 + PfGW456L13_4219 0.17 -0.4
4,731,912 + PfGW456L13_4219 0.17 +1.0
4,731,912 + PfGW456L13_4219 0.17 -1.1
4,731,912 + PfGW456L13_4219 0.17 -1.0
4,731,912 + PfGW456L13_4219 0.17 -1.2
4,731,913 - PfGW456L13_4219 0.18 -0.3
4,731,913 - PfGW456L13_4219 0.18 -0.4
4,731,913 - PfGW456L13_4219 0.18 +0.6
4,731,913 - PfGW456L13_4219 0.18 +0.1
4,731,913 - PfGW456L13_4219 0.18 -1.3
4,731,913 - PfGW456L13_4219 0.18 +0.5
4,731,913 - PfGW456L13_4219 0.18 -0.2
4,731,913 - +0.5
4,731,913 - PfGW456L13_4219 0.18 -0.3
4,731,913 - PfGW456L13_4219 0.18 -0.1
4,731,913 - PfGW456L13_4219 0.18 +1.0
4,731,913 - PfGW456L13_4219 0.18 -0.3
4,731,913 - PfGW456L13_4219 0.18 +0.5
4,731,913 - PfGW456L13_4219 0.18 +0.3
4,731,913 - PfGW456L13_4219 0.18 -0.6
4,731,914 + PfGW456L13_4219 0.18 +0.3
4,731,914 + PfGW456L13_4219 0.18 +0.7
4,731,914 + PfGW456L13_4219 0.18 +0.3
4,731,914 + PfGW456L13_4219 0.18 +0.9
4,731,914 + PfGW456L13_4219 0.18 +2.1
4,731,914 + PfGW456L13_4219 0.18 -0.9
4,731,914 + PfGW456L13_4219 0.18 +0.4
4,731,914 + PfGW456L13_4219 0.18 +0.6
4,731,914 + PfGW456L13_4219 0.18 -0.6
4,731,914 + PfGW456L13_4219 0.18 +1.3
4,731,915 - PfGW456L13_4219 0.18 -0.0
4,731,915 - PfGW456L13_4219 0.18 -0.9
4,731,915 - PfGW456L13_4219 0.18 -0.4
4,731,915 - PfGW456L13_4219 0.18 +1.0
4,731,915 - PfGW456L13_4219 0.18 +1.6
4,731,915 - PfGW456L13_4219 0.18 -0.5
4,731,993 + PfGW456L13_4219 0.22 -1.0
4,731,993 + PfGW456L13_4219 0.22 -1.3
4,731,993 + PfGW456L13_4219 0.22 -0.3
4,731,993 + PfGW456L13_4219 0.22 -2.2
4,731,994 - PfGW456L13_4219 0.22 -0.6
4,731,994 - PfGW456L13_4219 0.22 -0.4
4,732,002 + PfGW456L13_4219 0.22 +0.3
4,732,002 + PfGW456L13_4219 0.22 -0.6
4,732,002 + PfGW456L13_4219 0.22 +1.4
4,732,002 + PfGW456L13_4219 0.22 -0.6
4,732,002 + PfGW456L13_4219 0.22 -0.2
4,732,002 + PfGW456L13_4219 0.22 +0.1
4,732,002 + PfGW456L13_4219 0.22 +0.3
4,732,003 - PfGW456L13_4219 0.22 +1.1
4,732,003 - PfGW456L13_4219 0.22 -0.6
4,732,003 - PfGW456L13_4219 0.22 +0.1
4,732,003 - PfGW456L13_4219 0.22 +0.4
4,732,005 + PfGW456L13_4219 0.22 +0.1
4,732,005 + PfGW456L13_4219 0.22 -1.8
4,732,005 + PfGW456L13_4219 0.22 +1.4
4,732,005 + PfGW456L13_4219 0.22 +0.6
4,732,005 + PfGW456L13_4219 0.22 -1.0
4,732,005 + PfGW456L13_4219 0.22 +0.7
4,732,005 + PfGW456L13_4219 0.22 -0.5
4,732,005 + PfGW456L13_4219 0.22 +2.0
4,732,005 + PfGW456L13_4219 0.22 +0.3
4,732,005 + PfGW456L13_4219 0.22 +1.2
4,732,005 + PfGW456L13_4219 0.22 -0.7
4,732,005 + PfGW456L13_4219 0.22 -2.2
4,732,005 + PfGW456L13_4219 0.22 +1.1
4,732,006 - PfGW456L13_4219 0.23 -0.1
4,732,006 - PfGW456L13_4219 0.23 -1.0
4,732,006 - PfGW456L13_4219 0.23 +0.4
4,732,006 - PfGW456L13_4219 0.23 -0.7
4,732,006 - PfGW456L13_4219 0.23 -0.2
4,732,006 - PfGW456L13_4219 0.23 +0.3
4,732,137 + PfGW456L13_4219 0.29 -3.0
4,732,137 + PfGW456L13_4219 0.29 -0.9
4,732,204 - PfGW456L13_4219 0.33 -0.1
4,732,204 - PfGW456L13_4219 0.33 +0.6
4,732,204 - PfGW456L13_4219 0.33 -2.6
4,732,204 - PfGW456L13_4219 0.33 +0.4
4,732,204 - PfGW456L13_4219 0.33 -0.4
4,732,369 + PfGW456L13_4219 0.42 +0.4
4,732,369 + PfGW456L13_4219 0.42 -0.3
4,732,389 + PfGW456L13_4219 0.43 -0.5
4,732,389 + PfGW456L13_4219 0.43 +0.1
4,732,390 - PfGW456L13_4219 0.43 -0.3
4,732,390 - PfGW456L13_4219 0.43 -0.5
4,732,404 + PfGW456L13_4219 0.44 -0.3
4,732,405 - PfGW456L13_4219 0.44 -2.4
4,732,405 - PfGW456L13_4219 0.44 -0.9
4,732,405 - PfGW456L13_4219 0.44 +2.0
4,732,405 - PfGW456L13_4219 0.44 +0.6

Or see this region's nucleotide sequence