Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4182

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4180 and PfGW456L13_4181 overlap by 4 nucleotidesPfGW456L13_4181 and PfGW456L13_4182 are separated by 91 nucleotidesPfGW456L13_4182 and PfGW456L13_4183 are separated by 124 nucleotidesPfGW456L13_4183 and PfGW456L13_4184 are separated by 65 nucleotides PfGW456L13_4180 - Uricase (urate oxidase) (EC 1.7.3.3), at 4,692,137 to 4,693,063 _4180 PfGW456L13_4181 - 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase, at 4,693,060 to 4,693,575 _4181 PfGW456L13_4182 - Allantoicase (EC 3.5.3.4), at 4,693,667 to 4,694,662 _4182 PfGW456L13_4183 - Ureidoglycolate hydrolase (EC 3.5.3.19), at 4,694,787 to 4,695,290 _4183 PfGW456L13_4184 - FIG137887: membrane protein related to purine degradation, at 4,695,356 to 4,696,645 _4184 Position (kb) 4693 4694 4695Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4692.701 kb on + strand, within PfGW456L13_4180at 4692.701 kb on + strand, within PfGW456L13_4180at 4692.701 kb on + strand, within PfGW456L13_4180at 4692.701 kb on + strand, within PfGW456L13_4180at 4692.702 kb on - strand, within PfGW456L13_4180at 4692.702 kb on - strand, within PfGW456L13_4180at 4692.719 kb on + strand, within PfGW456L13_4180at 4692.767 kb on + strand, within PfGW456L13_4180at 4692.768 kb on - strand, within PfGW456L13_4180at 4692.839 kb on + strand, within PfGW456L13_4180at 4692.839 kb on + strand, within PfGW456L13_4180at 4692.866 kb on + strand, within PfGW456L13_4180at 4692.968 kb on + strand, within PfGW456L13_4180at 4692.969 kb on - strand, within PfGW456L13_4180at 4692.973 kb on + strandat 4692.973 kb on + strandat 4692.974 kb on - strandat 4693.044 kb on - strandat 4693.132 kb on + strand, within PfGW456L13_4181at 4693.132 kb on + strand, within PfGW456L13_4181at 4693.132 kb on + strand, within PfGW456L13_4181at 4693.133 kb on - strand, within PfGW456L13_4181at 4693.133 kb on - strand, within PfGW456L13_4181at 4693.133 kb on - strand, within PfGW456L13_4181at 4693.133 kb on - strand, within PfGW456L13_4181at 4693.133 kb on - strand, within PfGW456L13_4181at 4693.133 kb on - strand, within PfGW456L13_4181at 4693.133 kb on - strand, within PfGW456L13_4181at 4693.133 kb on - strand, within PfGW456L13_4181at 4693.133 kb on - strand, within PfGW456L13_4181at 4693.133 kb on - strand, within PfGW456L13_4181at 4693.166 kb on - strand, within PfGW456L13_4181at 4693.409 kb on - strand, within PfGW456L13_4181at 4693.409 kb on - strand, within PfGW456L13_4181at 4693.409 kb on - strand, within PfGW456L13_4181at 4693.562 kb on + strandat 4693.563 kb on - strandat 4693.571 kb on + strandat 4693.571 kb on + strandat 4693.571 kb on + strandat 4693.572 kb on - strandat 4693.572 kb on - strandat 4693.573 kb on + strandat 4693.573 kb on + strandat 4693.573 kb on + strandat 4693.574 kb on - strandat 4693.632 kb on - strandat 4693.645 kb on + strandat 4693.645 kb on + strandat 4693.646 kb on - strandat 4693.646 kb on - strandat 4693.649 kb on + strandat 4693.650 kb on - strandat 4693.650 kb on - strandat 4693.677 kb on - strandat 4693.684 kb on - strandat 4693.798 kb on - strand, within PfGW456L13_4182at 4694.069 kb on + strand, within PfGW456L13_4182at 4694.069 kb on + strand, within PfGW456L13_4182at 4694.120 kb on + strand, within PfGW456L13_4182at 4694.121 kb on - strand, within PfGW456L13_4182at 4694.154 kb on - strand, within PfGW456L13_4182at 4694.272 kb on + strand, within PfGW456L13_4182at 4694.272 kb on + strand, within PfGW456L13_4182at 4694.272 kb on + strand, within PfGW456L13_4182at 4694.272 kb on + strand, within PfGW456L13_4182at 4694.273 kb on - strand, within PfGW456L13_4182at 4694.426 kb on + strandat 4694.427 kb on - strand, within PfGW456L13_4182at 4694.569 kb on + strandat 4694.569 kb on + strandat 4694.569 kb on + strandat 4694.569 kb on + strandat 4694.570 kb on - strandat 4694.657 kb on - strandat 4694.657 kb on - strandat 4694.660 kb on + strandat 4694.660 kb on + strandat 4694.661 kb on - strandat 4694.661 kb on - strandat 4694.661 kb on - strandat 4694.661 kb on - strandat 4694.752 kb on + strandat 4694.753 kb on - strandat 4694.758 kb on + strandat 4694.758 kb on + strandat 4694.758 kb on + strandat 4694.758 kb on + strandat 4694.758 kb on + strandat 4694.758 kb on + strandat 4694.758 kb on + strandat 4694.758 kb on + strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.759 kb on - strandat 4694.907 kb on - strand, within PfGW456L13_4183at 4694.907 kb on - strand, within PfGW456L13_4183at 4694.907 kb on - strand, within PfGW456L13_4183at 4694.907 kb on - strand, within PfGW456L13_4183at 4695.094 kb on + strand, within PfGW456L13_4183at 4695.095 kb on - strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.140 kb on + strand, within PfGW456L13_4183at 4695.141 kb on - strand, within PfGW456L13_4183at 4695.141 kb on - strand, within PfGW456L13_4183at 4695.141 kb on - strand, within PfGW456L13_4183at 4695.141 kb on - strand, within PfGW456L13_4183at 4695.141 kb on - strand, within PfGW456L13_4183at 4695.141 kb on - strand, within PfGW456L13_4183at 4695.141 kb on - strand, within PfGW456L13_4183at 4695.144 kb on + strand, within PfGW456L13_4183at 4695.144 kb on + strand, within PfGW456L13_4183at 4695.144 kb on + strand, within PfGW456L13_4183at 4695.145 kb on - strand, within PfGW456L13_4183at 4695.145 kb on - strand, within PfGW456L13_4183at 4695.145 kb on - strand, within PfGW456L13_4183at 4695.145 kb on - strand, within PfGW456L13_4183at 4695.145 kb on - strand, within PfGW456L13_4183at 4695.231 kb on - strand, within PfGW456L13_4183at 4695.231 kb on - strand, within PfGW456L13_4183at 4695.231 kb on - strand, within PfGW456L13_4183at 4695.231 kb on - strand, within PfGW456L13_4183at 4695.231 kb on - strand, within PfGW456L13_4183at 4695.288 kb on + strandat 4695.289 kb on - strandat 4695.289 kb on - strandat 4695.334 kb on - strandat 4695.334 kb on - strandat 4695.398 kb on - strandat 4695.398 kb on - strandat 4695.398 kb on - strandat 4695.428 kb on + strandat 4695.515 kb on - strand, within PfGW456L13_4184at 4695.515 kb on - strand, within PfGW456L13_4184at 4695.518 kb on + strand, within PfGW456L13_4184at 4695.518 kb on + strand, within PfGW456L13_4184at 4695.518 kb on + strand, within PfGW456L13_4184at 4695.518 kb on + strand, within PfGW456L13_4184at 4695.518 kb on + strand, within PfGW456L13_4184at 4695.519 kb on - strand, within PfGW456L13_4184at 4695.519 kb on - strand, within PfGW456L13_4184at 4695.519 kb on - strand, within PfGW456L13_4184at 4695.533 kb on + strand, within PfGW456L13_4184at 4695.534 kb on - strand, within PfGW456L13_4184at 4695.534 kb on - strand, within PfGW456L13_4184at 4695.590 kb on + strand, within PfGW456L13_4184at 4695.590 kb on + strand, within PfGW456L13_4184at 4695.590 kb on + strand, within PfGW456L13_4184at 4695.590 kb on + strand, within PfGW456L13_4184at 4695.590 kb on + strand, within PfGW456L13_4184at 4695.591 kb on - strand, within PfGW456L13_4184at 4695.591 kb on - strand, within PfGW456L13_4184at 4695.591 kb on - strand, within PfGW456L13_4184at 4695.591 kb on - strand, within PfGW456L13_4184at 4695.591 kb on - strand, within PfGW456L13_4184at 4695.635 kb on + strand, within PfGW456L13_4184at 4695.635 kb on + strand, within PfGW456L13_4184at 4695.635 kb on + strand, within PfGW456L13_4184at 4695.635 kb on + strand, within PfGW456L13_4184at 4695.636 kb on - strand, within PfGW456L13_4184at 4695.654 kb on - strand, within PfGW456L13_4184at 4695.654 kb on - strand, within PfGW456L13_4184

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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4,692,701 + PfGW456L13_4180 0.61 -0.0
4,692,701 + PfGW456L13_4180 0.61 +1.0
4,692,701 + PfGW456L13_4180 0.61 +0.2
4,692,701 + PfGW456L13_4180 0.61 +1.4
4,692,702 - PfGW456L13_4180 0.61 -0.6
4,692,702 - PfGW456L13_4180 0.61 +0.3
4,692,719 + PfGW456L13_4180 0.63 +0.6
4,692,767 + PfGW456L13_4180 0.68 -3.0
4,692,768 - PfGW456L13_4180 0.68 -2.7
4,692,839 + PfGW456L13_4180 0.76 -0.1
4,692,839 + PfGW456L13_4180 0.76 +0.5
4,692,866 + PfGW456L13_4180 0.79 +0.1
4,692,968 + PfGW456L13_4180 0.90 -0.6
4,692,969 - PfGW456L13_4180 0.90 +0.6
4,692,973 + +0.3
4,692,973 + +1.1
4,692,974 - -1.3
4,693,044 - -0.2
4,693,132 + PfGW456L13_4181 0.14 -0.9
4,693,132 + PfGW456L13_4181 0.14 +0.6
4,693,132 + PfGW456L13_4181 0.14 -1.0
4,693,133 - PfGW456L13_4181 0.14 +0.9
4,693,133 - PfGW456L13_4181 0.14 -2.7
4,693,133 - PfGW456L13_4181 0.14 -0.6
4,693,133 - PfGW456L13_4181 0.14 +0.5
4,693,133 - PfGW456L13_4181 0.14 -0.7
4,693,133 - PfGW456L13_4181 0.14 +0.6
4,693,133 - PfGW456L13_4181 0.14 +1.3
4,693,133 - PfGW456L13_4181 0.14 +0.6
4,693,133 - PfGW456L13_4181 0.14 -1.7
4,693,133 - PfGW456L13_4181 0.14 +2.1
4,693,166 - PfGW456L13_4181 0.21 +1.4
4,693,409 - PfGW456L13_4181 0.68 +0.9
4,693,409 - PfGW456L13_4181 0.68 +0.6
4,693,409 - PfGW456L13_4181 0.68 +0.9
4,693,562 + +0.3
4,693,563 - +1.9
4,693,571 + -2.1
4,693,571 + +0.9
4,693,571 + +0.2
4,693,572 - -0.3
4,693,572 - -0.1
4,693,573 + -0.0
4,693,573 + +0.7
4,693,573 + -1.4
4,693,574 - -1.1
4,693,632 - -2.2
4,693,645 + +0.2
4,693,645 + +1.6
4,693,646 - -2.0
4,693,646 - -1.7
4,693,649 + -0.6
4,693,650 - +1.8
4,693,650 - -0.0
4,693,677 - -0.7
4,693,684 - -0.9
4,693,798 - PfGW456L13_4182 0.13 -0.0
4,694,069 + PfGW456L13_4182 0.40 -2.3
4,694,069 + PfGW456L13_4182 0.40 +0.3
4,694,120 + PfGW456L13_4182 0.45 -0.9
4,694,121 - PfGW456L13_4182 0.46 -0.6
4,694,154 - PfGW456L13_4182 0.49 -0.5
4,694,272 + PfGW456L13_4182 0.61 -0.6
4,694,272 + PfGW456L13_4182 0.61 -0.3
4,694,272 + PfGW456L13_4182 0.61 -0.7
4,694,272 + PfGW456L13_4182 0.61 +1.2
4,694,273 - PfGW456L13_4182 0.61 -0.0
4,694,426 + -0.7
4,694,427 - PfGW456L13_4182 0.76 -2.2
4,694,569 + +1.0
4,694,569 + +1.1
4,694,569 + -0.7
4,694,569 + +1.0
4,694,570 - +0.4
4,694,657 - +1.0
4,694,657 - -0.2
4,694,660 + +0.3
4,694,660 + +0.2
4,694,661 - +0.3
4,694,661 - +0.6
4,694,661 - +0.2
4,694,661 - -2.5
4,694,752 + +2.2
4,694,753 - -2.5
4,694,758 + +1.1
4,694,758 + +0.4
4,694,758 + -0.2
4,694,758 + -1.0
4,694,758 + -1.6
4,694,758 + +0.3
4,694,758 + -0.7
4,694,758 + -1.0
4,694,759 - +1.3
4,694,759 - +0.8
4,694,759 - -0.2
4,694,759 - +0.4
4,694,759 - -0.6
4,694,759 - +1.2
4,694,759 - +0.1
4,694,759 - +0.9
4,694,759 - +0.7
4,694,759 - -2.0
4,694,907 - PfGW456L13_4183 0.24 +1.2
4,694,907 - PfGW456L13_4183 0.24 -0.1
4,694,907 - PfGW456L13_4183 0.24 +0.4
4,694,907 - PfGW456L13_4183 0.24 +1.8
4,695,094 + PfGW456L13_4183 0.61 +1.9
4,695,095 - PfGW456L13_4183 0.61 -0.0
4,695,140 + PfGW456L13_4183 0.70 -0.9
4,695,140 + PfGW456L13_4183 0.70 -2.0
4,695,140 + PfGW456L13_4183 0.70 -1.0
4,695,140 + PfGW456L13_4183 0.70 -0.6
4,695,140 + PfGW456L13_4183 0.70 +0.9
4,695,140 + PfGW456L13_4183 0.70 -0.7
4,695,140 + PfGW456L13_4183 0.70 +1.3
4,695,140 + PfGW456L13_4183 0.70 -1.5
4,695,140 + PfGW456L13_4183 0.70 +1.3
4,695,140 + PfGW456L13_4183 0.70 +0.5
4,695,140 + PfGW456L13_4183 0.70 +2.3
4,695,141 - PfGW456L13_4183 0.70 -2.2
4,695,141 - PfGW456L13_4183 0.70 -0.2
4,695,141 - PfGW456L13_4183 0.70 -1.3
4,695,141 - PfGW456L13_4183 0.70 +0.1
4,695,141 - PfGW456L13_4183 0.70 +1.0
4,695,141 - PfGW456L13_4183 0.70 -0.7
4,695,141 - PfGW456L13_4183 0.70 -1.4
4,695,144 + PfGW456L13_4183 0.71 +0.6
4,695,144 + PfGW456L13_4183 0.71 +0.9
4,695,144 + PfGW456L13_4183 0.71 +0.9
4,695,145 - PfGW456L13_4183 0.71 -2.5
4,695,145 - PfGW456L13_4183 0.71 +1.3
4,695,145 - PfGW456L13_4183 0.71 +0.0
4,695,145 - PfGW456L13_4183 0.71 -0.6
4,695,145 - PfGW456L13_4183 0.71 +1.8
4,695,231 - PfGW456L13_4183 0.88 -0.0
4,695,231 - PfGW456L13_4183 0.88 +0.1
4,695,231 - PfGW456L13_4183 0.88 -1.0
4,695,231 - PfGW456L13_4183 0.88 +0.2
4,695,231 - PfGW456L13_4183 0.88 -0.6
4,695,288 + -1.6
4,695,289 - +1.9
4,695,289 - +1.6
4,695,334 - -0.7
4,695,334 - +1.7
4,695,398 - -1.2
4,695,398 - -0.0
4,695,398 - -2.2
4,695,428 + +0.0
4,695,515 - PfGW456L13_4184 0.12 -1.8
4,695,515 - PfGW456L13_4184 0.12 -3.0
4,695,518 + PfGW456L13_4184 0.13 +0.2
4,695,518 + PfGW456L13_4184 0.13 +0.4
4,695,518 + PfGW456L13_4184 0.13 +0.2
4,695,518 + PfGW456L13_4184 0.13 +0.1
4,695,518 + PfGW456L13_4184 0.13 +0.6
4,695,519 - PfGW456L13_4184 0.13 +0.3
4,695,519 - PfGW456L13_4184 0.13 +0.6
4,695,519 - PfGW456L13_4184 0.13 -3.1
4,695,533 + PfGW456L13_4184 0.14 +1.3
4,695,534 - PfGW456L13_4184 0.14 +2.0
4,695,534 - PfGW456L13_4184 0.14 -3.5
4,695,590 + PfGW456L13_4184 0.18 -2.5
4,695,590 + PfGW456L13_4184 0.18 -1.0
4,695,590 + PfGW456L13_4184 0.18 -2.0
4,695,590 + PfGW456L13_4184 0.18 -0.8
4,695,590 + PfGW456L13_4184 0.18 -1.9
4,695,591 - PfGW456L13_4184 0.18 +0.4
4,695,591 - PfGW456L13_4184 0.18 +1.7
4,695,591 - PfGW456L13_4184 0.18 -0.7
4,695,591 - PfGW456L13_4184 0.18 -0.3
4,695,591 - PfGW456L13_4184 0.18 -1.7
4,695,635 + PfGW456L13_4184 0.22 -2.4
4,695,635 + PfGW456L13_4184 0.22 -1.3
4,695,635 + PfGW456L13_4184 0.22 +0.4
4,695,635 + PfGW456L13_4184 0.22 +0.3
4,695,636 - PfGW456L13_4184 0.22 -1.0
4,695,654 - PfGW456L13_4184 0.23 +1.9
4,695,654 - PfGW456L13_4184 0.23 -1.0

Or see this region's nucleotide sequence