Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4145

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4144 and PfGW456L13_4145 are separated by 100 nucleotidesPfGW456L13_4145 and PfGW456L13_4146 are separated by 95 nucleotides PfGW456L13_4144 - Magnesium and cobalt transport protein CorA, at 4,660,208 to 4,661,179 _4144 PfGW456L13_4145 - Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 4,661,280 to 4,662,002 _4145 PfGW456L13_4146 - Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 4,662,098 to 4,664,242 _4146 Position (kb) 4661 4662 4663Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4660.349 kb on + strand, within PfGW456L13_4144at 4660.349 kb on + strand, within PfGW456L13_4144at 4660.349 kb on + strand, within PfGW456L13_4144at 4660.350 kb on - strand, within PfGW456L13_4144at 4660.350 kb on - strand, within PfGW456L13_4144at 4660.350 kb on - strand, within PfGW456L13_4144at 4660.461 kb on - strand, within PfGW456L13_4144at 4660.461 kb on - strand, within PfGW456L13_4144at 4660.461 kb on - strand, within PfGW456L13_4144at 4660.461 kb on - strand, within PfGW456L13_4144at 4660.461 kb on - strand, within PfGW456L13_4144at 4660.508 kb on - strand, within PfGW456L13_4144at 4660.508 kb on - strand, within PfGW456L13_4144at 4660.508 kb on - strand, within PfGW456L13_4144at 4660.508 kb on - strand, within PfGW456L13_4144at 4660.526 kb on + strand, within PfGW456L13_4144at 4660.527 kb on - strand, within PfGW456L13_4144at 4660.527 kb on - strand, within PfGW456L13_4144at 4660.535 kb on - strand, within PfGW456L13_4144at 4660.626 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.661 kb on + strand, within PfGW456L13_4144at 4660.661 kb on + strand, within PfGW456L13_4144at 4660.739 kb on + strand, within PfGW456L13_4144at 4660.740 kb on - strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.756 kb on - strand, within PfGW456L13_4144at 4660.756 kb on - strand, within PfGW456L13_4144at 4660.756 kb on - strand, within PfGW456L13_4144at 4660.756 kb on - strand, within PfGW456L13_4144at 4660.793 kb on + strand, within PfGW456L13_4144at 4660.793 kb on + strand, within PfGW456L13_4144at 4660.793 kb on + strand, within PfGW456L13_4144at 4660.794 kb on - strand, within PfGW456L13_4144at 4660.794 kb on - strand, within PfGW456L13_4144at 4660.872 kb on - strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4661.054 kb on + strand, within PfGW456L13_4144at 4661.054 kb on + strand, within PfGW456L13_4144at 4661.055 kb on - strand, within PfGW456L13_4144at 4661.055 kb on - strand, within PfGW456L13_4144at 4661.055 kb on - strand, within PfGW456L13_4144at 4661.102 kb on + strandat 4661.122 kb on + strandat 4661.123 kb on - strandat 4661.125 kb on + strandat 4661.125 kb on + strandat 4661.265 kb on + strandat 4661.272 kb on + strandat 4661.272 kb on + strandat 4661.272 kb on + strandat 4661.273 kb on - strandat 4661.273 kb on - strandat 4661.367 kb on - strand, within PfGW456L13_4145at 4661.377 kb on + strand, within PfGW456L13_4145at 4661.378 kb on - strand, within PfGW456L13_4145at 4661.429 kb on - strand, within PfGW456L13_4145at 4661.429 kb on - strand, within PfGW456L13_4145at 4661.485 kb on + strand, within PfGW456L13_4145at 4661.486 kb on - strand, within PfGW456L13_4145at 4661.486 kb on - strand, within PfGW456L13_4145at 4661.572 kb on - strand, within PfGW456L13_4145at 4661.626 kb on + strand, within PfGW456L13_4145at 4661.626 kb on + strand, within PfGW456L13_4145at 4661.627 kb on - strand, within PfGW456L13_4145at 4661.740 kb on + strand, within PfGW456L13_4145at 4661.741 kb on - strand, within PfGW456L13_4145at 4661.755 kb on + strand, within PfGW456L13_4145at 4661.756 kb on - strand, within PfGW456L13_4145at 4661.821 kb on + strand, within PfGW456L13_4145at 4661.852 kb on - strand, within PfGW456L13_4145at 4661.872 kb on + strand, within PfGW456L13_4145at 4661.872 kb on + strand, within PfGW456L13_4145at 4661.873 kb on - strand, within PfGW456L13_4145at 4662.010 kb on - strandat 4662.029 kb on + strandat 4662.030 kb on - strandat 4662.030 kb on - strandat 4662.099 kb on + strandat 4662.100 kb on - strandat 4662.100 kb on - strandat 4662.162 kb on + strandat 4662.162 kb on + strandat 4662.163 kb on - strandat 4662.163 kb on - strandat 4662.163 kb on - strandat 4662.163 kb on - strandat 4662.177 kb on + strandat 4662.211 kb on - strandat 4662.453 kb on + strand, within PfGW456L13_4146at 4662.453 kb on + strand, within PfGW456L13_4146at 4662.453 kb on + strand, within PfGW456L13_4146at 4662.453 kb on + strand, within PfGW456L13_4146at 4662.454 kb on - strand, within PfGW456L13_4146at 4662.454 kb on - strand, within PfGW456L13_4146at 4662.583 kb on + strand, within PfGW456L13_4146at 4662.633 kb on - strand, within PfGW456L13_4146at 4662.633 kb on - strand, within PfGW456L13_4146at 4662.796 kb on - strand, within PfGW456L13_4146at 4662.796 kb on - strand, within PfGW456L13_4146

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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4,660,349 + PfGW456L13_4144 0.15 -0.2
4,660,349 + PfGW456L13_4144 0.15 -0.1
4,660,349 + PfGW456L13_4144 0.15 +1.0
4,660,350 - PfGW456L13_4144 0.15 +0.8
4,660,350 - PfGW456L13_4144 0.15 +1.4
4,660,350 - PfGW456L13_4144 0.15 -0.7
4,660,461 - PfGW456L13_4144 0.26 -0.5
4,660,461 - PfGW456L13_4144 0.26 -1.4
4,660,461 - PfGW456L13_4144 0.26 +0.7
4,660,461 - PfGW456L13_4144 0.26 -0.4
4,660,461 - PfGW456L13_4144 0.26 -1.0
4,660,508 - PfGW456L13_4144 0.31 -0.6
4,660,508 - PfGW456L13_4144 0.31 -0.1
4,660,508 - PfGW456L13_4144 0.31 +1.3
4,660,508 - PfGW456L13_4144 0.31 +1.4
4,660,526 + PfGW456L13_4144 0.33 +0.4
4,660,527 - PfGW456L13_4144 0.33 -0.1
4,660,527 - PfGW456L13_4144 0.33 +0.9
4,660,535 - PfGW456L13_4144 0.34 +0.6
4,660,626 + PfGW456L13_4144 0.43 +1.0
4,660,631 + PfGW456L13_4144 0.44 +0.3
4,660,631 + PfGW456L13_4144 0.44 +0.1
4,660,631 + PfGW456L13_4144 0.44 -1.1
4,660,631 + PfGW456L13_4144 0.44 -2.1
4,660,631 + PfGW456L13_4144 0.44 +0.5
4,660,631 + PfGW456L13_4144 0.44 -1.2
4,660,631 + PfGW456L13_4144 0.44 -0.3
4,660,632 - PfGW456L13_4144 0.44 +2.3
4,660,632 - PfGW456L13_4144 0.44 -0.4
4,660,632 - PfGW456L13_4144 0.44 +0.2
4,660,632 - PfGW456L13_4144 0.44 -1.0
4,660,632 - PfGW456L13_4144 0.44 +0.5
4,660,632 - PfGW456L13_4144 0.44 -0.3
4,660,661 + PfGW456L13_4144 0.47 -1.1
4,660,661 + PfGW456L13_4144 0.47 +0.1
4,660,739 + PfGW456L13_4144 0.55 -1.4
4,660,740 - PfGW456L13_4144 0.55 -1.1
4,660,755 + PfGW456L13_4144 0.56 +0.9
4,660,755 + PfGW456L13_4144 0.56 +1.0
4,660,755 + PfGW456L13_4144 0.56 +0.2
4,660,755 + PfGW456L13_4144 0.56 +0.1
4,660,755 + PfGW456L13_4144 0.56 -1.2
4,660,755 + PfGW456L13_4144 0.56 -1.9
4,660,755 + PfGW456L13_4144 0.56 +0.5
4,660,755 + PfGW456L13_4144 0.56 +0.9
4,660,755 + PfGW456L13_4144 0.56 -0.7
4,660,755 + PfGW456L13_4144 0.56 -0.4
4,660,755 + PfGW456L13_4144 0.56 +0.9
4,660,755 + PfGW456L13_4144 0.56 +1.0
4,660,756 - PfGW456L13_4144 0.56 -0.5
4,660,756 - PfGW456L13_4144 0.56 +1.1
4,660,756 - PfGW456L13_4144 0.56 -0.6
4,660,756 - PfGW456L13_4144 0.56 +0.0
4,660,793 + PfGW456L13_4144 0.60 +0.5
4,660,793 + PfGW456L13_4144 0.60 -0.6
4,660,793 + PfGW456L13_4144 0.60 +0.3
4,660,794 - PfGW456L13_4144 0.60 +0.5
4,660,794 - PfGW456L13_4144 0.60 -3.2
4,660,872 - PfGW456L13_4144 0.68 +1.3
4,660,896 + PfGW456L13_4144 0.71 +0.5
4,660,896 + PfGW456L13_4144 0.71 +2.1
4,660,896 + PfGW456L13_4144 0.71 +0.5
4,660,896 + PfGW456L13_4144 0.71 -1.9
4,660,896 + PfGW456L13_4144 0.71 +0.9
4,660,896 + PfGW456L13_4144 0.71 -3.4
4,660,896 + PfGW456L13_4144 0.71 -0.7
4,661,054 + PfGW456L13_4144 0.87 +0.0
4,661,054 + PfGW456L13_4144 0.87 +1.6
4,661,055 - PfGW456L13_4144 0.87 +0.7
4,661,055 - PfGW456L13_4144 0.87 -0.3
4,661,055 - PfGW456L13_4144 0.87 +1.1
4,661,102 + -1.5
4,661,122 + -0.2
4,661,123 - -2.4
4,661,125 + -1.1
4,661,125 + +1.6
4,661,265 + +1.2
4,661,272 + -1.7
4,661,272 + +0.9
4,661,272 + -0.1
4,661,273 - +0.2
4,661,273 - +0.5
4,661,367 - PfGW456L13_4145 0.12 -2.4
4,661,377 + PfGW456L13_4145 0.13 -1.3
4,661,378 - PfGW456L13_4145 0.14 -1.2
4,661,429 - PfGW456L13_4145 0.21 -0.8
4,661,429 - PfGW456L13_4145 0.21 -1.2
4,661,485 + PfGW456L13_4145 0.28 -1.4
4,661,486 - PfGW456L13_4145 0.28 -3.0
4,661,486 - PfGW456L13_4145 0.28 -0.4
4,661,572 - PfGW456L13_4145 0.40 -0.0
4,661,626 + PfGW456L13_4145 0.48 -1.7
4,661,626 + PfGW456L13_4145 0.48 +0.5
4,661,627 - PfGW456L13_4145 0.48 -1.4
4,661,740 + PfGW456L13_4145 0.64 -1.5
4,661,741 - PfGW456L13_4145 0.64 -2.9
4,661,755 + PfGW456L13_4145 0.66 -1.7
4,661,756 - PfGW456L13_4145 0.66 -0.6
4,661,821 + PfGW456L13_4145 0.75 -0.7
4,661,852 - PfGW456L13_4145 0.79 -3.3
4,661,872 + PfGW456L13_4145 0.82 -1.0
4,661,872 + PfGW456L13_4145 0.82 -1.2
4,661,873 - PfGW456L13_4145 0.82 -1.0
4,662,010 - -1.1
4,662,029 + -1.0
4,662,030 - -1.7
4,662,030 - +0.3
4,662,099 + +2.3
4,662,100 - -1.8
4,662,100 - +0.5
4,662,162 + -0.7
4,662,162 + +0.1
4,662,163 - -1.0
4,662,163 - -0.7
4,662,163 - -0.1
4,662,163 - -2.3
4,662,177 + -1.0
4,662,211 - -0.1
4,662,453 + PfGW456L13_4146 0.17 -1.8
4,662,453 + PfGW456L13_4146 0.17 -2.0
4,662,453 + PfGW456L13_4146 0.17 -0.2
4,662,453 + PfGW456L13_4146 0.17 +2.3
4,662,454 - PfGW456L13_4146 0.17 -1.4
4,662,454 - PfGW456L13_4146 0.17 +1.7
4,662,583 + PfGW456L13_4146 0.23 -2.6
4,662,633 - PfGW456L13_4146 0.25 -1.6
4,662,633 - PfGW456L13_4146 0.25 -0.4
4,662,796 - PfGW456L13_4146 0.33 +0.1
4,662,796 - PfGW456L13_4146 0.33 +2.0

Or see this region's nucleotide sequence