Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1413

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1411 and PfGW456L13_1412 are separated by 79 nucleotidesPfGW456L13_1412 and PfGW456L13_1413 are separated by 106 nucleotidesPfGW456L13_1413 and PfGW456L13_1414 overlap by 4 nucleotidesPfGW456L13_1414 and PfGW456L13_1415 are separated by 143 nucleotides PfGW456L13_1411 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 1,559,773 to 1,560,693 _1411 PfGW456L13_1412 - acetyltransferase, GNAT family, at 1,560,773 to 1,561,342 _1412 PfGW456L13_1413 - Acyl-CoA thioesterase II (EC 3.1.2.-), at 1,561,449 to 1,562,318 _1413 PfGW456L13_1414 - Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family, at 1,562,315 to 1,562,908 _1414 PfGW456L13_1415 - putative exported protein, at 1,563,052 to 1,564,011 _1415 Position (kb) 1561 1562 1563Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1560.479 kb on - strand, within PfGW456L13_1411at 1560.494 kb on + strand, within PfGW456L13_1411at 1560.494 kb on + strand, within PfGW456L13_1411at 1560.495 kb on - strand, within PfGW456L13_1411at 1560.495 kb on - strand, within PfGW456L13_1411at 1560.495 kb on - strand, within PfGW456L13_1411at 1560.506 kb on + strand, within PfGW456L13_1411at 1560.506 kb on + strand, within PfGW456L13_1411at 1560.506 kb on + strand, within PfGW456L13_1411at 1560.506 kb on + strand, within PfGW456L13_1411at 1560.506 kb on + strand, within PfGW456L13_1411at 1560.507 kb on - strand, within PfGW456L13_1411at 1560.507 kb on - strand, within PfGW456L13_1411at 1560.507 kb on - strand, within PfGW456L13_1411at 1560.507 kb on - strand, within PfGW456L13_1411at 1560.507 kb on - strand, within PfGW456L13_1411at 1560.507 kb on - strand, within PfGW456L13_1411at 1560.662 kb on + strandat 1560.662 kb on + strandat 1560.662 kb on + strandat 1560.662 kb on + strandat 1560.662 kb on + strandat 1560.662 kb on + strandat 1560.662 kb on + strandat 1560.663 kb on - strandat 1560.663 kb on - strandat 1560.663 kb on - strandat 1560.663 kb on - strandat 1560.674 kb on + strandat 1560.675 kb on - strandat 1560.675 kb on - strandat 1560.706 kb on + strandat 1560.706 kb on + strandat 1560.706 kb on + strandat 1560.707 kb on - strandat 1560.707 kb on - strandat 1560.707 kb on - strandat 1560.707 kb on - strandat 1560.707 kb on - strandat 1560.727 kb on - strandat 1560.737 kb on + strandat 1560.737 kb on + strandat 1560.838 kb on - strand, within PfGW456L13_1412at 1560.881 kb on + strand, within PfGW456L13_1412at 1560.882 kb on - strand, within PfGW456L13_1412at 1560.882 kb on - strand, within PfGW456L13_1412at 1560.882 kb on - strand, within PfGW456L13_1412at 1561.010 kb on - strand, within PfGW456L13_1412at 1561.100 kb on + strand, within PfGW456L13_1412at 1561.298 kb on + strandat 1561.299 kb on - strandat 1561.299 kb on - strandat 1561.358 kb on + strandat 1561.358 kb on + strandat 1561.635 kb on + strand, within PfGW456L13_1413at 1561.636 kb on - strand, within PfGW456L13_1413at 1561.672 kb on + strand, within PfGW456L13_1413at 1561.672 kb on + strand, within PfGW456L13_1413at 1561.672 kb on + strand, within PfGW456L13_1413at 1561.672 kb on + strand, within PfGW456L13_1413at 1561.672 kb on + strand, within PfGW456L13_1413at 1561.672 kb on + strand, within PfGW456L13_1413at 1561.672 kb on + strand, within PfGW456L13_1413at 1561.672 kb on + strand, within PfGW456L13_1413at 1561.672 kb on + strand, within PfGW456L13_1413at 1561.672 kb on + strand, within PfGW456L13_1413at 1561.672 kb on + strand, within PfGW456L13_1413at 1561.672 kb on + strand, within PfGW456L13_1413at 1561.672 kb on + strand, within PfGW456L13_1413at 1561.672 kb on + strand, within PfGW456L13_1413at 1561.673 kb on - strand, within PfGW456L13_1413at 1561.673 kb on - strand, within PfGW456L13_1413at 1561.673 kb on - strand, within PfGW456L13_1413at 1561.673 kb on - strand, within PfGW456L13_1413at 1561.673 kb on - strand, within PfGW456L13_1413at 1561.673 kb on - strand, within PfGW456L13_1413at 1561.673 kb on - strand, within PfGW456L13_1413at 1561.673 kb on - strand, within PfGW456L13_1413at 1561.673 kb on - strand, within PfGW456L13_1413at 1561.673 kb on - strand, within PfGW456L13_1413at 1561.673 kb on - strand, within PfGW456L13_1413at 1561.674 kb on + strand, within PfGW456L13_1413at 1561.674 kb on + strand, within PfGW456L13_1413at 1561.674 kb on + strand, within PfGW456L13_1413at 1561.675 kb on - strand, within PfGW456L13_1413at 1561.675 kb on - strand, within PfGW456L13_1413at 1561.675 kb on - strand, within PfGW456L13_1413at 1561.675 kb on - strand, within PfGW456L13_1413at 1561.675 kb on - strand, within PfGW456L13_1413at 1561.675 kb on - strand, within PfGW456L13_1413at 1561.953 kb on + strand, within PfGW456L13_1413at 1561.954 kb on - strand, within PfGW456L13_1413at 1561.954 kb on - strand, within PfGW456L13_1413at 1561.954 kb on - strand, within PfGW456L13_1413at 1561.983 kb on + strand, within PfGW456L13_1413at 1561.983 kb on + strand, within PfGW456L13_1413at 1561.983 kb on + strand, within PfGW456L13_1413at 1561.983 kb on + strand, within PfGW456L13_1413at 1561.983 kb on + strand, within PfGW456L13_1413at 1561.983 kb on + strand, within PfGW456L13_1413at 1561.983 kb on + strand, within PfGW456L13_1413at 1561.983 kb on + strand, within PfGW456L13_1413at 1561.983 kb on + strand, within PfGW456L13_1413at 1561.983 kb on + strand, within PfGW456L13_1413at 1561.984 kb on - strand, within PfGW456L13_1413at 1561.984 kb on - strand, within PfGW456L13_1413at 1561.984 kb on - strand, within PfGW456L13_1413at 1561.984 kb on - strand, within PfGW456L13_1413at 1561.984 kb on - strand, within PfGW456L13_1413at 1561.984 kb on - strand, within PfGW456L13_1413at 1562.033 kb on + strand, within PfGW456L13_1413at 1562.033 kb on + strand, within PfGW456L13_1413at 1562.033 kb on + strand, within PfGW456L13_1413at 1562.033 kb on + strand, within PfGW456L13_1413at 1562.033 kb on + strand, within PfGW456L13_1413at 1562.033 kb on + strand, within PfGW456L13_1413at 1562.033 kb on + strand, within PfGW456L13_1413at 1562.033 kb on + strand, within PfGW456L13_1413at 1562.033 kb on + strand, within PfGW456L13_1413at 1562.033 kb on + strand, within PfGW456L13_1413at 1562.033 kb on + strand, within PfGW456L13_1413at 1562.033 kb on + strand, within PfGW456L13_1413at 1562.033 kb on + strand, within PfGW456L13_1413at 1562.033 kb on + strand, within PfGW456L13_1413at 1562.034 kb on - strand, within PfGW456L13_1413at 1562.034 kb on - strand, within PfGW456L13_1413at 1562.034 kb on - strand, within PfGW456L13_1413at 1562.037 kb on + strand, within PfGW456L13_1413at 1562.037 kb on + strand, within PfGW456L13_1413at 1562.038 kb on - strand, within PfGW456L13_1413at 1562.038 kb on - strand, within PfGW456L13_1413at 1562.038 kb on - strand, within PfGW456L13_1413at 1562.049 kb on + strand, within PfGW456L13_1413at 1562.049 kb on + strand, within PfGW456L13_1413at 1562.050 kb on - strand, within PfGW456L13_1413at 1562.050 kb on - strand, within PfGW456L13_1413at 1562.117 kb on + strand, within PfGW456L13_1413at 1562.117 kb on + strand, within PfGW456L13_1413at 1562.118 kb on - strand, within PfGW456L13_1413at 1562.118 kb on - strand, within PfGW456L13_1413at 1562.187 kb on + strand, within PfGW456L13_1413at 1562.926 kb on - strandat 1562.926 kb on - strandat 1563.054 kb on - strandat 1563.054 kb on - strandat 1563.090 kb on + strandat 1563.090 kb on + strandat 1563.090 kb on + strandat 1563.091 kb on - strandat 1563.091 kb on - strandat 1563.091 kb on - strandat 1563.091 kb on - strandat 1563.173 kb on + strand, within PfGW456L13_1415at 1563.183 kb on - strand, within PfGW456L13_1415at 1563.237 kb on + strand, within PfGW456L13_1415at 1563.238 kb on - strand, within PfGW456L13_1415at 1563.285 kb on - strand, within PfGW456L13_1415at 1563.305 kb on + strand, within PfGW456L13_1415at 1563.305 kb on + strand, within PfGW456L13_1415at 1563.305 kb on + strand, within PfGW456L13_1415at 1563.305 kb on + strand, within PfGW456L13_1415at 1563.305 kb on + strand, within PfGW456L13_1415at 1563.305 kb on + strand, within PfGW456L13_1415at 1563.305 kb on + strand, within PfGW456L13_1415at 1563.306 kb on - strand, within PfGW456L13_1415

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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1,560,479 - PfGW456L13_1411 0.77 +0.1
1,560,494 + PfGW456L13_1411 0.78 -0.7
1,560,494 + PfGW456L13_1411 0.78 -0.8
1,560,495 - PfGW456L13_1411 0.78 +0.3
1,560,495 - PfGW456L13_1411 0.78 +0.1
1,560,495 - PfGW456L13_1411 0.78 +0.2
1,560,506 + PfGW456L13_1411 0.80 -1.5
1,560,506 + PfGW456L13_1411 0.80 -0.7
1,560,506 + PfGW456L13_1411 0.80 +1.8
1,560,506 + PfGW456L13_1411 0.80 +0.8
1,560,506 + PfGW456L13_1411 0.80 -1.7
1,560,507 - PfGW456L13_1411 0.80 +0.1
1,560,507 - PfGW456L13_1411 0.80 -1.4
1,560,507 - PfGW456L13_1411 0.80 +0.1
1,560,507 - PfGW456L13_1411 0.80 +0.4
1,560,507 - PfGW456L13_1411 0.80 -1.8
1,560,507 - PfGW456L13_1411 0.80 -0.5
1,560,662 + +0.3
1,560,662 + -0.2
1,560,662 + +0.7
1,560,662 + -1.3
1,560,662 + +1.3
1,560,662 + -0.1
1,560,662 + -2.5
1,560,663 - -2.6
1,560,663 - +0.3
1,560,663 - +0.8
1,560,663 - -0.3
1,560,674 + -1.4
1,560,675 - +0.2
1,560,675 - -1.3
1,560,706 + -1.2
1,560,706 + +2.0
1,560,706 + -0.3
1,560,707 - -0.6
1,560,707 - +0.5
1,560,707 - -1.3
1,560,707 - +1.8
1,560,707 - -0.4
1,560,727 - +1.4
1,560,737 + -1.7
1,560,737 + -0.2
1,560,838 - PfGW456L13_1412 0.11 -2.0
1,560,881 + PfGW456L13_1412 0.19 -0.8
1,560,882 - PfGW456L13_1412 0.19 -0.6
1,560,882 - PfGW456L13_1412 0.19 +0.3
1,560,882 - PfGW456L13_1412 0.19 -0.0
1,561,010 - PfGW456L13_1412 0.42 -0.2
1,561,100 + PfGW456L13_1412 0.57 +0.3
1,561,298 + -0.4
1,561,299 - -0.7
1,561,299 - +1.8
1,561,358 + -0.9
1,561,358 + -0.1
1,561,635 + PfGW456L13_1413 0.21 -0.5
1,561,636 - PfGW456L13_1413 0.21 -0.1
1,561,672 + PfGW456L13_1413 0.26 +0.4
1,561,672 + PfGW456L13_1413 0.26 -2.7
1,561,672 + PfGW456L13_1413 0.26 -0.9
1,561,672 + PfGW456L13_1413 0.26 -0.9
1,561,672 + PfGW456L13_1413 0.26 -1.8
1,561,672 + PfGW456L13_1413 0.26 -0.1
1,561,672 + PfGW456L13_1413 0.26 -1.7
1,561,672 + PfGW456L13_1413 0.26 +1.4
1,561,672 + PfGW456L13_1413 0.26 -1.3
1,561,672 + PfGW456L13_1413 0.26 -1.0
1,561,672 + PfGW456L13_1413 0.26 -0.2
1,561,672 + PfGW456L13_1413 0.26 -0.2
1,561,672 + PfGW456L13_1413 0.26 -0.7
1,561,672 + PfGW456L13_1413 0.26 -1.3
1,561,673 - PfGW456L13_1413 0.26 +0.4
1,561,673 - PfGW456L13_1413 0.26 +0.1
1,561,673 - PfGW456L13_1413 0.26 -3.3
1,561,673 - PfGW456L13_1413 0.26 +0.4
1,561,673 - PfGW456L13_1413 0.26 +1.7
1,561,673 - PfGW456L13_1413 0.26 +0.6
1,561,673 - PfGW456L13_1413 0.26 +0.8
1,561,673 - PfGW456L13_1413 0.26 -1.3
1,561,673 - PfGW456L13_1413 0.26 -0.2
1,561,673 - PfGW456L13_1413 0.26 -2.2
1,561,673 - PfGW456L13_1413 0.26 -1.1
1,561,674 + PfGW456L13_1413 0.26 -0.7
1,561,674 + PfGW456L13_1413 0.26 -2.3
1,561,674 + PfGW456L13_1413 0.26 -1.9
1,561,675 - PfGW456L13_1413 0.26 +0.4
1,561,675 - PfGW456L13_1413 0.26 +0.1
1,561,675 - PfGW456L13_1413 0.26 -2.0
1,561,675 - PfGW456L13_1413 0.26 -0.3
1,561,675 - PfGW456L13_1413 0.26 -0.5
1,561,675 - PfGW456L13_1413 0.26 -0.4
1,561,953 + PfGW456L13_1413 0.58 -0.3
1,561,954 - PfGW456L13_1413 0.58 +0.7
1,561,954 - PfGW456L13_1413 0.58 +1.0
1,561,954 - PfGW456L13_1413 0.58 -0.8
1,561,983 + PfGW456L13_1413 0.61 +1.4
1,561,983 + PfGW456L13_1413 0.61 +0.6
1,561,983 + PfGW456L13_1413 0.61 -3.0
1,561,983 + PfGW456L13_1413 0.61 +1.3
1,561,983 + PfGW456L13_1413 0.61 +1.7
1,561,983 + PfGW456L13_1413 0.61 +0.9
1,561,983 + PfGW456L13_1413 0.61 +0.2
1,561,983 + PfGW456L13_1413 0.61 -1.9
1,561,983 + PfGW456L13_1413 0.61 +0.1
1,561,983 + PfGW456L13_1413 0.61 +0.4
1,561,984 - PfGW456L13_1413 0.61 +0.4
1,561,984 - PfGW456L13_1413 0.61 +0.8
1,561,984 - PfGW456L13_1413 0.61 +2.3
1,561,984 - PfGW456L13_1413 0.61 +0.2
1,561,984 - PfGW456L13_1413 0.61 -0.3
1,561,984 - PfGW456L13_1413 0.61 +0.9
1,562,033 + PfGW456L13_1413 0.67 +0.2
1,562,033 + PfGW456L13_1413 0.67 -0.3
1,562,033 + PfGW456L13_1413 0.67 -2.0
1,562,033 + PfGW456L13_1413 0.67 +0.0
1,562,033 + PfGW456L13_1413 0.67 +1.0
1,562,033 + PfGW456L13_1413 0.67 -2.7
1,562,033 + PfGW456L13_1413 0.67 -4.3
1,562,033 + PfGW456L13_1413 0.67 -0.7
1,562,033 + PfGW456L13_1413 0.67 -1.3
1,562,033 + PfGW456L13_1413 0.67 +1.2
1,562,033 + PfGW456L13_1413 0.67 +0.1
1,562,033 + PfGW456L13_1413 0.67 -0.2
1,562,033 + PfGW456L13_1413 0.67 -0.3
1,562,033 + PfGW456L13_1413 0.67 +0.5
1,562,034 - PfGW456L13_1413 0.67 -1.1
1,562,034 - PfGW456L13_1413 0.67 +0.0
1,562,034 - PfGW456L13_1413 0.67 +0.6
1,562,037 + PfGW456L13_1413 0.68 -2.4
1,562,037 + PfGW456L13_1413 0.68 -0.6
1,562,038 - PfGW456L13_1413 0.68 -0.0
1,562,038 - PfGW456L13_1413 0.68 +0.8
1,562,038 - PfGW456L13_1413 0.68 +0.6
1,562,049 + PfGW456L13_1413 0.69 +1.4
1,562,049 + PfGW456L13_1413 0.69 +0.3
1,562,050 - PfGW456L13_1413 0.69 +0.6
1,562,050 - PfGW456L13_1413 0.69 -0.7
1,562,117 + PfGW456L13_1413 0.77 +0.8
1,562,117 + PfGW456L13_1413 0.77 -1.0
1,562,118 - PfGW456L13_1413 0.77 +0.0
1,562,118 - PfGW456L13_1413 0.77 -0.4
1,562,187 + PfGW456L13_1413 0.85 -0.3
1,562,926 - +1.0
1,562,926 - +0.2
1,563,054 - +0.7
1,563,054 - -1.7
1,563,090 + +0.3
1,563,090 + -0.7
1,563,090 + -1.3
1,563,091 - +0.3
1,563,091 - -0.7
1,563,091 - -0.8
1,563,091 - +1.1
1,563,173 + PfGW456L13_1415 0.13 +0.9
1,563,183 - PfGW456L13_1415 0.14 +0.7
1,563,237 + PfGW456L13_1415 0.19 +0.3
1,563,238 - PfGW456L13_1415 0.19 +0.7
1,563,285 - PfGW456L13_1415 0.24 +0.1
1,563,305 + PfGW456L13_1415 0.26 +0.0
1,563,305 + PfGW456L13_1415 0.26 -3.3
1,563,305 + PfGW456L13_1415 0.26 +0.6
1,563,305 + PfGW456L13_1415 0.26 -0.4
1,563,305 + PfGW456L13_1415 0.26 -1.1
1,563,305 + PfGW456L13_1415 0.26 -0.2
1,563,305 + PfGW456L13_1415 0.26 +0.0
1,563,306 - PfGW456L13_1415 0.26 -1.0

Or see this region's nucleotide sequence