Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1006

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1004 and PfGW456L13_1005 overlap by 4 nucleotidesPfGW456L13_1005 and PfGW456L13_1006 are separated by 26 nucleotidesPfGW456L13_1006 and PfGW456L13_1007 are separated by 7 nucleotides PfGW456L13_1004 - Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15), at 1,117,968 to 1,118,564 _1004 PfGW456L13_1005 - FIG003551: hypothetical protein, at 1,118,561 to 1,118,995 _1005 PfGW456L13_1006 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 1,119,022 to 1,119,642 _1006 PfGW456L13_1007 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 1,119,650 to 1,120,789 _1007 Position (kb) 1119 1120Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1118.096 kb on - strand, within PfGW456L13_1004at 1118.205 kb on + strand, within PfGW456L13_1004at 1118.206 kb on - strand, within PfGW456L13_1004at 1118.308 kb on + strand, within PfGW456L13_1004at 1118.308 kb on + strand, within PfGW456L13_1004at 1118.308 kb on + strand, within PfGW456L13_1004at 1118.308 kb on + strand, within PfGW456L13_1004at 1118.309 kb on - strand, within PfGW456L13_1004at 1118.309 kb on - strand, within PfGW456L13_1004at 1118.309 kb on - strand, within PfGW456L13_1004at 1118.309 kb on - strand, within PfGW456L13_1004at 1118.313 kb on - strand, within PfGW456L13_1004at 1118.313 kb on - strand, within PfGW456L13_1004at 1118.529 kb on - strandat 1118.541 kb on + strandat 1118.676 kb on + strand, within PfGW456L13_1005at 1118.676 kb on + strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.679 kb on + strand, within PfGW456L13_1005at 1118.679 kb on + strand, within PfGW456L13_1005at 1118.679 kb on + strand, within PfGW456L13_1005at 1118.679 kb on + strand, within PfGW456L13_1005at 1118.679 kb on + strand, within PfGW456L13_1005at 1118.679 kb on + strand, within PfGW456L13_1005at 1118.679 kb on + strand, within PfGW456L13_1005at 1118.680 kb on - strand, within PfGW456L13_1005at 1118.680 kb on - strand, within PfGW456L13_1005at 1118.721 kb on + strand, within PfGW456L13_1005at 1118.721 kb on + strand, within PfGW456L13_1005at 1118.721 kb on + strand, within PfGW456L13_1005at 1118.721 kb on + strand, within PfGW456L13_1005at 1118.722 kb on - strand, within PfGW456L13_1005at 1118.722 kb on - strand, within PfGW456L13_1005at 1118.722 kb on - strand, within PfGW456L13_1005at 1118.722 kb on - strand, within PfGW456L13_1005at 1118.862 kb on + strand, within PfGW456L13_1005at 1118.863 kb on - strand, within PfGW456L13_1005at 1118.863 kb on - strand, within PfGW456L13_1005at 1118.863 kb on - strand, within PfGW456L13_1005at 1118.863 kb on - strand, within PfGW456L13_1005at 1118.863 kb on - strand, within PfGW456L13_1005at 1118.863 kb on - strand, within PfGW456L13_1005at 1118.863 kb on - strand, within PfGW456L13_1005at 1118.883 kb on + strand, within PfGW456L13_1005at 1118.883 kb on + strand, within PfGW456L13_1005at 1118.883 kb on + strand, within PfGW456L13_1005at 1118.884 kb on - strand, within PfGW456L13_1005at 1118.884 kb on - strand, within PfGW456L13_1005at 1118.884 kb on - strand, within PfGW456L13_1005at 1118.884 kb on - strand, within PfGW456L13_1005at 1118.884 kb on - strand, within PfGW456L13_1005at 1118.884 kb on - strand, within PfGW456L13_1005at 1118.884 kb on - strand, within PfGW456L13_1005at 1118.972 kb on + strandat 1118.973 kb on - strandat 1118.973 kb on - strandat 1118.984 kb on + strandat 1119.013 kb on + strandat 1119.013 kb on + strandat 1119.014 kb on - strandat 1119.068 kb on + strandat 1119.068 kb on + strandat 1119.069 kb on - strandat 1119.069 kb on - strandat 1119.069 kb on - strandat 1119.072 kb on + strandat 1119.073 kb on - strandat 1119.085 kb on + strand, within PfGW456L13_1006at 1119.086 kb on - strand, within PfGW456L13_1006at 1119.093 kb on + strand, within PfGW456L13_1006at 1119.100 kb on + strand, within PfGW456L13_1006at 1119.100 kb on + strand, within PfGW456L13_1006at 1119.100 kb on + strand, within PfGW456L13_1006at 1119.100 kb on + strand, within PfGW456L13_1006at 1119.100 kb on + strand, within PfGW456L13_1006at 1119.101 kb on - strand, within PfGW456L13_1006at 1119.101 kb on - strand, within PfGW456L13_1006at 1119.101 kb on - strand, within PfGW456L13_1006at 1119.101 kb on - strand, within PfGW456L13_1006at 1119.227 kb on + strand, within PfGW456L13_1006at 1119.236 kb on + strand, within PfGW456L13_1006at 1119.281 kb on + strand, within PfGW456L13_1006at 1119.658 kb on + strandat 1119.658 kb on + strandat 1119.658 kb on + strandat 1119.658 kb on + strandat 1119.659 kb on - strandat 1119.659 kb on - strandat 1119.672 kb on + strandat 1119.672 kb on + strandat 1119.672 kb on + strandat 1119.672 kb on + strandat 1119.672 kb on + strandat 1119.672 kb on + strandat 1119.673 kb on - strandat 1119.673 kb on - strandat 1119.673 kb on - strandat 1119.673 kb on - strandat 1119.673 kb on - strandat 1119.673 kb on - strandat 1119.912 kb on + strand, within PfGW456L13_1007at 1119.939 kb on + strand, within PfGW456L13_1007at 1119.990 kb on + strand, within PfGW456L13_1007at 1119.990 kb on + strand, within PfGW456L13_1007at 1119.990 kb on + strand, within PfGW456L13_1007at 1119.990 kb on + strand, within PfGW456L13_1007at 1120.026 kb on + strand, within PfGW456L13_1007at 1120.027 kb on - strand, within PfGW456L13_1007at 1120.027 kb on - strand, within PfGW456L13_1007at 1120.027 kb on - strand, within PfGW456L13_1007at 1120.089 kb on + strand, within PfGW456L13_1007at 1120.089 kb on + strand, within PfGW456L13_1007at 1120.089 kb on + strand, within PfGW456L13_1007at 1120.089 kb on + strand, within PfGW456L13_1007at 1120.089 kb on + strand, within PfGW456L13_1007at 1120.090 kb on - strand, within PfGW456L13_1007at 1120.090 kb on - strand, within PfGW456L13_1007at 1120.281 kb on + strand, within PfGW456L13_1007at 1120.281 kb on + strand, within PfGW456L13_1007at 1120.281 kb on + strand, within PfGW456L13_1007at 1120.281 kb on + strand, within PfGW456L13_1007at 1120.282 kb on - strand, within PfGW456L13_1007at 1120.282 kb on - strand, within PfGW456L13_1007at 1120.282 kb on - strand, within PfGW456L13_1007at 1120.406 kb on + strand, within PfGW456L13_1007

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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1,118,096 - PfGW456L13_1004 0.21 +0.8
1,118,205 + PfGW456L13_1004 0.40 -1.0
1,118,206 - PfGW456L13_1004 0.40 -0.0
1,118,308 + PfGW456L13_1004 0.57 +1.9
1,118,308 + PfGW456L13_1004 0.57 -0.9
1,118,308 + PfGW456L13_1004 0.57 -1.7
1,118,308 + PfGW456L13_1004 0.57 +0.7
1,118,309 - PfGW456L13_1004 0.57 +0.8
1,118,309 - PfGW456L13_1004 0.57 -0.4
1,118,309 - PfGW456L13_1004 0.57 +1.1
1,118,309 - PfGW456L13_1004 0.57 -2.1
1,118,313 - PfGW456L13_1004 0.58 +0.1
1,118,313 - PfGW456L13_1004 0.58 +0.0
1,118,529 - +1.9
1,118,541 + -0.0
1,118,676 + PfGW456L13_1005 0.26 -2.9
1,118,676 + PfGW456L13_1005 0.26 +0.0
1,118,677 - PfGW456L13_1005 0.27 +0.2
1,118,677 - PfGW456L13_1005 0.27 -0.9
1,118,677 - PfGW456L13_1005 0.27 -0.8
1,118,677 - PfGW456L13_1005 0.27 -0.2
1,118,677 - PfGW456L13_1005 0.27 -1.6
1,118,677 - PfGW456L13_1005 0.27 +2.1
1,118,677 - PfGW456L13_1005 0.27 -1.8
1,118,677 - PfGW456L13_1005 0.27 -1.9
1,118,677 - PfGW456L13_1005 0.27 +1.5
1,118,679 + PfGW456L13_1005 0.27 -0.8
1,118,679 + PfGW456L13_1005 0.27 -0.9
1,118,679 + PfGW456L13_1005 0.27 -0.2
1,118,679 + PfGW456L13_1005 0.27 -1.9
1,118,679 + PfGW456L13_1005 0.27 -0.1
1,118,679 + PfGW456L13_1005 0.27 +1.1
1,118,679 + PfGW456L13_1005 0.27 -2.3
1,118,680 - PfGW456L13_1005 0.27 -0.5
1,118,680 - PfGW456L13_1005 0.27 +0.8
1,118,721 + PfGW456L13_1005 0.37 -0.4
1,118,721 + PfGW456L13_1005 0.37 +0.3
1,118,721 + PfGW456L13_1005 0.37 -0.7
1,118,721 + PfGW456L13_1005 0.37 -0.8
1,118,722 - PfGW456L13_1005 0.37 +0.3
1,118,722 - PfGW456L13_1005 0.37 -0.1
1,118,722 - PfGW456L13_1005 0.37 -1.6
1,118,722 - PfGW456L13_1005 0.37 -1.9
1,118,862 + PfGW456L13_1005 0.69 +1.4
1,118,863 - PfGW456L13_1005 0.69 +0.3
1,118,863 - PfGW456L13_1005 0.69 +2.0
1,118,863 - PfGW456L13_1005 0.69 -1.7
1,118,863 - PfGW456L13_1005 0.69 -0.5
1,118,863 - PfGW456L13_1005 0.69 -2.2
1,118,863 - PfGW456L13_1005 0.69 +1.4
1,118,863 - PfGW456L13_1005 0.69 +1.6
1,118,883 + PfGW456L13_1005 0.74 -1.0
1,118,883 + PfGW456L13_1005 0.74 -0.7
1,118,883 + PfGW456L13_1005 0.74 -0.4
1,118,884 - PfGW456L13_1005 0.74 +1.5
1,118,884 - PfGW456L13_1005 0.74 +1.5
1,118,884 - PfGW456L13_1005 0.74 -0.4
1,118,884 - PfGW456L13_1005 0.74 +0.2
1,118,884 - PfGW456L13_1005 0.74 -0.8
1,118,884 - PfGW456L13_1005 0.74 +3.0
1,118,884 - PfGW456L13_1005 0.74 +0.4
1,118,972 + -1.2
1,118,973 - +0.7
1,118,973 - -0.1
1,118,984 + -2.0
1,119,013 + -3.1
1,119,013 + -0.1
1,119,014 - -2.9
1,119,068 + -3.4
1,119,068 + -2.1
1,119,069 - -3.3
1,119,069 - -2.5
1,119,069 - -0.2
1,119,072 + -4.8
1,119,073 - -4.6
1,119,085 + PfGW456L13_1006 0.10 -0.9
1,119,086 - PfGW456L13_1006 0.10 -3.2
1,119,093 + PfGW456L13_1006 0.11 -3.5
1,119,100 + PfGW456L13_1006 0.13 -3.3
1,119,100 + PfGW456L13_1006 0.13 -3.1
1,119,100 + PfGW456L13_1006 0.13 -4.6
1,119,100 + PfGW456L13_1006 0.13 -1.0
1,119,100 + PfGW456L13_1006 0.13 -3.6
1,119,101 - PfGW456L13_1006 0.13 -1.5
1,119,101 - PfGW456L13_1006 0.13 -3.5
1,119,101 - PfGW456L13_1006 0.13 -2.8
1,119,101 - PfGW456L13_1006 0.13 -1.0
1,119,227 + PfGW456L13_1006 0.33 -2.8
1,119,236 + PfGW456L13_1006 0.34 -2.9
1,119,281 + PfGW456L13_1006 0.42 -3.9
1,119,658 + -3.1
1,119,658 + -0.9
1,119,658 + -3.4
1,119,658 + +0.2
1,119,659 - +1.2
1,119,659 - +0.6
1,119,672 + -3.2
1,119,672 + +0.0
1,119,672 + -2.5
1,119,672 + -3.1
1,119,672 + -2.9
1,119,672 + -3.4
1,119,673 - -2.0
1,119,673 - -0.8
1,119,673 - -1.9
1,119,673 - -2.2
1,119,673 - -3.0
1,119,673 - -3.5
1,119,912 + PfGW456L13_1007 0.23 -3.9
1,119,939 + PfGW456L13_1007 0.25 -4.0
1,119,990 + PfGW456L13_1007 0.30 +0.3
1,119,990 + PfGW456L13_1007 0.30 -2.6
1,119,990 + PfGW456L13_1007 0.30 -3.1
1,119,990 + PfGW456L13_1007 0.30 -2.4
1,120,026 + PfGW456L13_1007 0.33 -1.4
1,120,027 - PfGW456L13_1007 0.33 -2.5
1,120,027 - PfGW456L13_1007 0.33 -2.1
1,120,027 - PfGW456L13_1007 0.33 -3.1
1,120,089 + PfGW456L13_1007 0.39 -3.3
1,120,089 + PfGW456L13_1007 0.39 -2.4
1,120,089 + PfGW456L13_1007 0.39 -1.7
1,120,089 + PfGW456L13_1007 0.39 -1.7
1,120,089 + PfGW456L13_1007 0.39 -3.0
1,120,090 - PfGW456L13_1007 0.39 -3.6
1,120,090 - PfGW456L13_1007 0.39 -3.5
1,120,281 + PfGW456L13_1007 0.55 -1.9
1,120,281 + PfGW456L13_1007 0.55 -3.7
1,120,281 + PfGW456L13_1007 0.55 -4.3
1,120,281 + PfGW456L13_1007 0.55 -4.1
1,120,282 - PfGW456L13_1007 0.55 -2.7
1,120,282 - PfGW456L13_1007 0.55 -1.8
1,120,282 - PfGW456L13_1007 0.55 +0.3
1,120,406 + PfGW456L13_1007 0.66 -4.4

Or see this region's nucleotide sequence