Experiment: m.b. D-Cycloserine 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4431 and Echvi_4432 are separated by 196 nucleotides Echvi_4432 and Echvi_4433 are separated by 226 nucleotides Echvi_4433 and Echvi_4434 are separated by 533 nucleotides
Echvi_4431: Echvi_4431 - hypothetical protein, at 5,301,685 to 5,301,834
_4431
Echvi_4432: Echvi_4432 - DNA repair proteins, at 5,302,031 to 5,302,501
_4432
Echvi_4433: Echvi_4433 - hypothetical protein, at 5,302,728 to 5,303,642
_4433
Echvi_4434: Echvi_4434 - Uncharacterized protein conserved in bacteria, at 5,304,176 to 5,304,643
_4434
Position (kb) 5302
5303
5304 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5301.908 kb on + strand at 5301.954 kb on + strand at 5301.977 kb on - strand at 5301.977 kb on - strand at 5302.018 kb on + strand at 5302.082 kb on - strand, within Echvi_4432 at 5302.084 kb on + strand, within Echvi_4432 at 5302.094 kb on + strand, within Echvi_4432 at 5302.112 kb on + strand, within Echvi_4432 at 5302.112 kb on + strand, within Echvi_4432 at 5302.142 kb on + strand, within Echvi_4432 at 5302.142 kb on + strand, within Echvi_4432 at 5302.143 kb on - strand, within Echvi_4432 at 5302.148 kb on - strand, within Echvi_4432 at 5302.148 kb on - strand, within Echvi_4432 at 5302.156 kb on + strand, within Echvi_4432 at 5302.165 kb on + strand, within Echvi_4432 at 5302.186 kb on + strand, within Echvi_4432 at 5302.211 kb on - strand, within Echvi_4432 at 5302.211 kb on - strand, within Echvi_4432 at 5302.265 kb on + strand, within Echvi_4432 at 5302.266 kb on - strand, within Echvi_4432 at 5302.266 kb on - strand, within Echvi_4432 at 5302.266 kb on - strand, within Echvi_4432 at 5302.266 kb on - strand, within Echvi_4432 at 5302.268 kb on - strand, within Echvi_4432 at 5302.277 kb on - strand, within Echvi_4432 at 5302.280 kb on + strand, within Echvi_4432 at 5302.282 kb on + strand, within Echvi_4432 at 5302.282 kb on + strand, within Echvi_4432 at 5302.283 kb on - strand, within Echvi_4432 at 5302.283 kb on - strand, within Echvi_4432 at 5302.286 kb on + strand, within Echvi_4432 at 5302.287 kb on - strand, within Echvi_4432 at 5302.287 kb on - strand, within Echvi_4432 at 5302.331 kb on - strand, within Echvi_4432 at 5302.376 kb on + strand, within Echvi_4432 at 5302.376 kb on + strand, within Echvi_4432 at 5302.386 kb on + strand, within Echvi_4432 at 5302.386 kb on + strand, within Echvi_4432 at 5302.386 kb on + strand, within Echvi_4432 at 5302.387 kb on - strand, within Echvi_4432 at 5302.387 kb on - strand, within Echvi_4432 at 5302.485 kb on - strand at 5302.528 kb on + strand at 5302.538 kb on - strand at 5302.542 kb on - strand at 5302.594 kb on - strand at 5302.668 kb on + strand at 5302.672 kb on - strand at 5302.685 kb on - strand at 5302.712 kb on + strand at 5302.723 kb on + strand at 5302.723 kb on + strand at 5302.723 kb on + strand at 5302.757 kb on + strand at 5302.782 kb on + strand at 5302.834 kb on + strand, within Echvi_4433 at 5302.858 kb on - strand, within Echvi_4433 at 5302.862 kb on + strand, within Echvi_4433 at 5302.862 kb on + strand, within Echvi_4433 at 5302.862 kb on + strand, within Echvi_4433 at 5302.867 kb on + strand, within Echvi_4433 at 5302.868 kb on - strand, within Echvi_4433 at 5302.868 kb on - strand, within Echvi_4433 at 5302.893 kb on - strand, within Echvi_4433 at 5302.968 kb on + strand, within Echvi_4433 at 5302.968 kb on + strand, within Echvi_4433 at 5302.969 kb on - strand, within Echvi_4433 at 5302.969 kb on - strand, within Echvi_4433 at 5302.969 kb on - strand, within Echvi_4433 at 5302.969 kb on - strand, within Echvi_4433 at 5302.970 kb on + strand, within Echvi_4433 at 5302.970 kb on + strand, within Echvi_4433 at 5302.970 kb on + strand, within Echvi_4433 at 5302.971 kb on - strand, within Echvi_4433 at 5303.102 kb on + strand, within Echvi_4433 at 5303.102 kb on + strand, within Echvi_4433 at 5303.103 kb on - strand, within Echvi_4433 at 5303.273 kb on - strand, within Echvi_4433 at 5303.314 kb on + strand, within Echvi_4433 at 5303.314 kb on + strand, within Echvi_4433 at 5303.315 kb on - strand, within Echvi_4433 at 5303.396 kb on + strand, within Echvi_4433 at 5303.468 kb on + strand, within Echvi_4433 at 5303.534 kb on + strand, within Echvi_4433 at 5303.671 kb on + strand at 5303.672 kb on - strand at 5303.677 kb on + strand at 5303.678 kb on - strand at 5303.678 kb on - strand at 5303.680 kb on + strand at 5303.680 kb on + strand at 5303.680 kb on + strand at 5303.680 kb on + strand at 5303.681 kb on - strand at 5303.681 kb on - strand at 5303.681 kb on - strand at 5303.681 kb on - strand at 5303.681 kb on - strand at 5303.683 kb on + strand at 5303.683 kb on + strand at 5303.683 kb on + strand at 5303.684 kb on - strand at 5303.684 kb on - strand at 5303.684 kb on - strand at 5303.753 kb on + strand at 5303.757 kb on + strand at 5303.757 kb on + strand at 5303.758 kb on - strand at 5303.758 kb on - strand at 5303.762 kb on - strand at 5303.812 kb on + strand at 5303.863 kb on - strand at 5303.863 kb on - strand at 5303.864 kb on + strand at 5303.893 kb on + strand at 5303.899 kb on - strand at 5303.934 kb on + strand at 5303.934 kb on + strand at 5303.934 kb on + strand at 5303.935 kb on - strand at 5303.935 kb on - strand at 5303.936 kb on + strand at 5303.936 kb on + strand at 5303.936 kb on + strand at 5303.937 kb on - strand at 5303.937 kb on - strand at 5303.937 kb on - strand at 5303.937 kb on - strand at 5303.939 kb on + strand at 5303.940 kb on - strand at 5303.941 kb on + strand at 5303.941 kb on + strand at 5303.942 kb on - strand at 5303.942 kb on - strand at 5303.942 kb on - strand at 5303.942 kb on - strand at 5303.944 kb on + strand at 5303.951 kb on - strand at 5303.952 kb on + strand at 5303.953 kb on - strand at 5303.955 kb on + strand at 5303.973 kb on + strand at 5304.110 kb on + strand at 5304.110 kb on + strand at 5304.111 kb on - strand at 5304.111 kb on - strand at 5304.111 kb on - strand at 5304.115 kb on + strand at 5304.188 kb on - strand at 5304.260 kb on + strand, within Echvi_4434 at 5304.260 kb on + strand, within Echvi_4434 at 5304.269 kb on + strand, within Echvi_4434 at 5304.270 kb on - strand, within Echvi_4434 at 5304.313 kb on + strand, within Echvi_4434 at 5304.314 kb on - strand, within Echvi_4434 at 5304.317 kb on - strand, within Echvi_4434 at 5304.425 kb on - strand, within Echvi_4434 at 5304.425 kb on - strand, within Echvi_4434 at 5304.425 kb on - strand, within Echvi_4434 at 5304.444 kb on + strand, within Echvi_4434 at 5304.445 kb on - strand, within Echvi_4434 at 5304.445 kb on - strand, within Echvi_4434 at 5304.454 kb on + strand at 5304.454 kb on + strand, within Echvi_4434 at 5304.455 kb on - strand, within Echvi_4434 at 5304.455 kb on - strand, within Echvi_4434 at 5304.466 kb on + strand, within Echvi_4434 at 5304.475 kb on + strand, within Echvi_4434 at 5304.475 kb on + strand, within Echvi_4434 at 5304.475 kb on + strand, within Echvi_4434 at 5304.475 kb on + strand, within Echvi_4434 at 5304.487 kb on - strand, within Echvi_4434 at 5304.553 kb on + strand, within Echvi_4434 at 5304.554 kb on - strand, within Echvi_4434 at 5304.555 kb on + strand, within Echvi_4434 at 5304.603 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.016 mg/ml remove 5,301,908 + -0.1 5,301,954 + +0.1 5,301,977 - -0.6 5,301,977 - +0.4 5,302,018 + +1.6 5,302,082 - Echvi_4432 0.11 -0.4 5,302,084 + Echvi_4432 0.11 +0.2 5,302,094 + Echvi_4432 0.13 +0.3 5,302,112 + Echvi_4432 0.17 -0.6 5,302,112 + Echvi_4432 0.17 -0.4 5,302,142 + Echvi_4432 0.24 -1.2 5,302,142 + Echvi_4432 0.24 -0.1 5,302,143 - Echvi_4432 0.24 -0.3 5,302,148 - Echvi_4432 0.25 +0.4 5,302,148 - Echvi_4432 0.25 +0.6 5,302,156 + Echvi_4432 0.27 -0.3 5,302,165 + Echvi_4432 0.28 -0.2 5,302,186 + Echvi_4432 0.33 +0.4 5,302,211 - Echvi_4432 0.38 -0.1 5,302,211 - Echvi_4432 0.38 -0.1 5,302,265 + Echvi_4432 0.50 +0.1 5,302,266 - Echvi_4432 0.50 -0.1 5,302,266 - Echvi_4432 0.50 +0.7 5,302,266 - Echvi_4432 0.50 -0.1 5,302,266 - Echvi_4432 0.50 -0.2 5,302,268 - Echvi_4432 0.50 -0.3 5,302,277 - Echvi_4432 0.52 +0.7 5,302,280 + Echvi_4432 0.53 -1.5 5,302,282 + Echvi_4432 0.53 +0.8 5,302,282 + Echvi_4432 0.53 +0.7 5,302,283 - Echvi_4432 0.54 -1.2 5,302,283 - Echvi_4432 0.54 -1.4 5,302,286 + Echvi_4432 0.54 -0.3 5,302,287 - Echvi_4432 0.54 +0.5 5,302,287 - Echvi_4432 0.54 -0.2 5,302,331 - Echvi_4432 0.64 -0.2 5,302,376 + Echvi_4432 0.73 -0.3 5,302,376 + Echvi_4432 0.73 -0.5 5,302,386 + Echvi_4432 0.75 +0.4 5,302,386 + Echvi_4432 0.75 -1.4 5,302,386 + Echvi_4432 0.75 -0.4 5,302,387 - Echvi_4432 0.76 -0.0 5,302,387 - Echvi_4432 0.76 +0.6 5,302,485 - -0.3 5,302,528 + +0.8 5,302,538 - -0.4 5,302,542 - +0.6 5,302,594 - -1.8 5,302,668 + +1.0 5,302,672 - -1.3 5,302,685 - +1.2 5,302,712 + +0.4 5,302,723 + -0.7 5,302,723 + +0.0 5,302,723 + +0.6 5,302,757 + -2.1 5,302,782 + -0.4 5,302,834 + Echvi_4433 0.12 -1.2 5,302,858 - Echvi_4433 0.14 -1.1 5,302,862 + Echvi_4433 0.15 -1.1 5,302,862 + Echvi_4433 0.15 +1.5 5,302,862 + Echvi_4433 0.15 +0.4 5,302,867 + Echvi_4433 0.15 -1.1 5,302,868 - Echvi_4433 0.15 -0.5 5,302,868 - Echvi_4433 0.15 -0.5 5,302,893 - Echvi_4433 0.18 +0.5 5,302,968 + Echvi_4433 0.26 -1.7 5,302,968 + Echvi_4433 0.26 -1.0 5,302,969 - Echvi_4433 0.26 -0.2 5,302,969 - Echvi_4433 0.26 +0.1 5,302,969 - Echvi_4433 0.26 -0.3 5,302,969 - Echvi_4433 0.26 +0.4 5,302,970 + Echvi_4433 0.26 +1.3 5,302,970 + Echvi_4433 0.26 -0.9 5,302,970 + Echvi_4433 0.26 -0.8 5,302,971 - Echvi_4433 0.27 -0.2 5,303,102 + Echvi_4433 0.41 +0.2 5,303,102 + Echvi_4433 0.41 -0.6 5,303,103 - Echvi_4433 0.41 +0.2 5,303,273 - Echvi_4433 0.60 -0.0 5,303,314 + Echvi_4433 0.64 -1.2 5,303,314 + Echvi_4433 0.64 +0.2 5,303,315 - Echvi_4433 0.64 -1.7 5,303,396 + Echvi_4433 0.73 +0.1 5,303,468 + Echvi_4433 0.81 -1.3 5,303,534 + Echvi_4433 0.88 -0.1 5,303,671 + -0.3 5,303,672 - +2.7 5,303,677 + -1.3 5,303,678 - +0.6 5,303,678 - +0.1 5,303,680 + +0.1 5,303,680 + -1.0 5,303,680 + +0.1 5,303,680 + -1.4 5,303,681 - -0.5 5,303,681 - +0.2 5,303,681 - -0.6 5,303,681 - +0.4 5,303,681 - +0.5 5,303,683 + -0.1 5,303,683 + +0.2 5,303,683 + +2.3 5,303,684 - +0.5 5,303,684 - +0.3 5,303,684 - -0.2 5,303,753 + +0.1 5,303,757 + +0.8 5,303,757 + -0.0 5,303,758 - -0.6 5,303,758 - +0.2 5,303,762 - +0.1 5,303,812 + +0.4 5,303,863 - -0.9 5,303,863 - +0.2 5,303,864 + -0.5 5,303,893 + +0.3 5,303,899 - -1.5 5,303,934 + -0.8 5,303,934 + +0.7 5,303,934 + +1.1 5,303,935 - +0.1 5,303,935 - -0.1 5,303,936 + -0.2 5,303,936 + -0.7 5,303,936 + -2.4 5,303,937 - -0.0 5,303,937 - +1.3 5,303,937 - +0.3 5,303,937 - +0.3 5,303,939 + +0.1 5,303,940 - -0.5 5,303,941 + +0.1 5,303,941 + -0.4 5,303,942 - +0.3 5,303,942 - +0.3 5,303,942 - +0.8 5,303,942 - -0.1 5,303,944 + +0.0 5,303,951 - +2.3 5,303,952 + -0.9 5,303,953 - +0.3 5,303,955 + +1.7 5,303,973 + -0.1 5,304,110 + -0.6 5,304,110 + +1.4 5,304,111 - -1.1 5,304,111 - -0.3 5,304,111 - -0.2 5,304,115 + -0.4 5,304,188 - +0.1 5,304,260 + Echvi_4434 0.18 -0.1 5,304,260 + Echvi_4434 0.18 +0.6 5,304,269 + Echvi_4434 0.20 -0.3 5,304,270 - Echvi_4434 0.20 +0.0 5,304,313 + Echvi_4434 0.29 -0.4 5,304,314 - Echvi_4434 0.29 -0.4 5,304,317 - Echvi_4434 0.30 -0.1 5,304,425 - Echvi_4434 0.53 +0.1 5,304,425 - Echvi_4434 0.53 -0.5 5,304,425 - Echvi_4434 0.53 -0.7 5,304,444 + Echvi_4434 0.57 +0.3 5,304,445 - Echvi_4434 0.57 +0.0 5,304,445 - Echvi_4434 0.57 -1.3 5,304,454 + +0.1 5,304,454 + Echvi_4434 0.59 -1.1 5,304,455 - Echvi_4434 0.60 +0.1 5,304,455 - Echvi_4434 0.60 -0.2 5,304,466 + Echvi_4434 0.62 -0.1 5,304,475 + Echvi_4434 0.64 +0.1 5,304,475 + Echvi_4434 0.64 +0.1 5,304,475 + Echvi_4434 0.64 -0.4 5,304,475 + Echvi_4434 0.64 -0.8 5,304,487 - Echvi_4434 0.66 -0.9 5,304,553 + Echvi_4434 0.81 -0.2 5,304,554 - Echvi_4434 0.81 +0.0 5,304,555 + Echvi_4434 0.81 +0.1 5,304,603 - +0.3
Or see this region's nucleotide sequence