Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3930

Experiment: m.b. D-Cycloserine 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3928 and Echvi_3929 are separated by 95 nucleotidesEchvi_3929 and Echvi_3930 are separated by 85 nucleotidesEchvi_3930 and Echvi_3931 are separated by 234 nucleotides Echvi_3928: Echvi_3928 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 4,703,628 to 4,704,386 _3928 Echvi_3929: Echvi_3929 - Transcriptional regulator, at 4,704,482 to 4,705,063 _3929 Echvi_3930: Echvi_3930 - Alpha-L-fucosidase, at 4,705,149 to 4,706,615 _3930 Echvi_3931: Echvi_3931 - N-acetyl-beta-hexosaminidase, at 4,706,850 to 4,707,974 _3931 Position (kb) 4705 4706 4707Strain fitness (log2 ratio) -2 -1 0 1 2at 4704.292 kb on + strand, within Echvi_3928at 4704.340 kb on - strandat 4704.340 kb on - strandat 4704.379 kb on + strandat 4704.380 kb on - strandat 4704.384 kb on + strandat 4704.454 kb on + strandat 4704.455 kb on - strandat 4704.455 kb on - strandat 4704.473 kb on + strandat 4704.474 kb on - strandat 4704.477 kb on - strandat 4704.494 kb on - strandat 4704.494 kb on - strandat 4704.554 kb on + strand, within Echvi_3929at 4704.557 kb on + strand, within Echvi_3929at 4704.558 kb on - strand, within Echvi_3929at 4704.568 kb on + strand, within Echvi_3929at 4704.568 kb on + strand, within Echvi_3929at 4704.569 kb on - strand, within Echvi_3929at 4704.615 kb on - strand, within Echvi_3929at 4704.615 kb on - strand, within Echvi_3929at 4704.666 kb on - strand, within Echvi_3929at 4704.667 kb on + strand, within Echvi_3929at 4704.667 kb on + strand, within Echvi_3929at 4704.667 kb on + strand, within Echvi_3929at 4704.667 kb on + strand, within Echvi_3929at 4704.667 kb on + strand, within Echvi_3929at 4704.667 kb on + strand, within Echvi_3929at 4704.667 kb on + strand, within Echvi_3929at 4704.668 kb on - strand, within Echvi_3929at 4704.668 kb on - strand, within Echvi_3929at 4704.668 kb on - strand, within Echvi_3929at 4704.668 kb on - strand, within Echvi_3929at 4704.668 kb on - strand, within Echvi_3929at 4704.893 kb on + strand, within Echvi_3929at 4704.897 kb on + strand, within Echvi_3929at 4704.901 kb on + strand, within Echvi_3929at 4704.901 kb on + strand, within Echvi_3929at 4704.974 kb on + strand, within Echvi_3929at 4704.975 kb on - strand, within Echvi_3929at 4704.976 kb on + strand, within Echvi_3929at 4704.976 kb on + strand, within Echvi_3929at 4704.985 kb on - strand, within Echvi_3929at 4705.035 kb on + strandat 4705.036 kb on - strandat 4705.083 kb on + strandat 4705.084 kb on - strandat 4705.087 kb on + strandat 4705.088 kb on - strandat 4705.088 kb on - strandat 4705.090 kb on + strandat 4705.090 kb on + strandat 4705.091 kb on - strandat 4705.113 kb on - strandat 4705.135 kb on - strandat 4705.156 kb on - strandat 4705.359 kb on + strand, within Echvi_3930at 4705.359 kb on + strand, within Echvi_3930at 4705.359 kb on + strand, within Echvi_3930at 4705.359 kb on + strand, within Echvi_3930at 4705.359 kb on + strand, within Echvi_3930at 4705.359 kb on + strand, within Echvi_3930at 4705.359 kb on + strand, within Echvi_3930at 4705.359 kb on + strand, within Echvi_3930at 4705.359 kb on + strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.438 kb on + strand, within Echvi_3930at 4705.438 kb on + strand, within Echvi_3930at 4705.438 kb on + strand, within Echvi_3930at 4705.438 kb on + strand, within Echvi_3930at 4705.438 kb on + strand, within Echvi_3930at 4705.439 kb on - strand, within Echvi_3930at 4705.439 kb on - strand, within Echvi_3930at 4705.505 kb on + strand, within Echvi_3930at 4705.525 kb on + strand, within Echvi_3930at 4705.525 kb on + strand, within Echvi_3930at 4705.525 kb on + strand, within Echvi_3930at 4705.525 kb on + strand, within Echvi_3930at 4705.525 kb on + strand, within Echvi_3930at 4705.526 kb on - strand, within Echvi_3930at 4705.526 kb on - strand, within Echvi_3930at 4705.526 kb on - strand, within Echvi_3930at 4705.526 kb on - strand, within Echvi_3930at 4705.529 kb on + strand, within Echvi_3930at 4705.529 kb on + strand, within Echvi_3930at 4705.529 kb on + strand, within Echvi_3930at 4705.530 kb on - strand, within Echvi_3930at 4705.530 kb on - strand, within Echvi_3930at 4705.685 kb on + strand, within Echvi_3930at 4705.685 kb on + strand, within Echvi_3930at 4705.686 kb on - strand, within Echvi_3930at 4705.689 kb on - strand, within Echvi_3930at 4705.689 kb on - strand, within Echvi_3930at 4705.689 kb on - strand, within Echvi_3930at 4705.689 kb on - strand, within Echvi_3930at 4705.689 kb on - strand, within Echvi_3930at 4705.691 kb on - strand, within Echvi_3930at 4705.691 kb on - strand, within Echvi_3930at 4705.717 kb on + strand, within Echvi_3930at 4705.718 kb on - strand, within Echvi_3930at 4705.793 kb on + strand, within Echvi_3930at 4705.793 kb on + strand, within Echvi_3930at 4705.795 kb on + strand, within Echvi_3930at 4705.796 kb on - strand, within Echvi_3930at 4705.796 kb on - strand, within Echvi_3930at 4705.876 kb on + strand, within Echvi_3930at 4705.961 kb on - strand, within Echvi_3930at 4705.993 kb on + strand, within Echvi_3930at 4705.993 kb on + strand, within Echvi_3930at 4706.041 kb on + strand, within Echvi_3930at 4706.042 kb on - strand, within Echvi_3930at 4706.059 kb on + strand, within Echvi_3930at 4706.059 kb on + strand, within Echvi_3930at 4706.060 kb on - strand, within Echvi_3930at 4706.060 kb on - strand, within Echvi_3930at 4706.060 kb on - strand, within Echvi_3930at 4706.060 kb on - strand, within Echvi_3930at 4706.060 kb on - strand, within Echvi_3930at 4706.060 kb on - strand, within Echvi_3930at 4706.062 kb on + strand, within Echvi_3930at 4706.062 kb on + strand, within Echvi_3930at 4706.062 kb on + strand, within Echvi_3930at 4706.062 kb on + strand, within Echvi_3930at 4706.062 kb on + strand, within Echvi_3930at 4706.062 kb on + strand, within Echvi_3930at 4706.062 kb on + strand, within Echvi_3930at 4706.063 kb on - strand, within Echvi_3930at 4706.063 kb on - strand, within Echvi_3930at 4706.102 kb on + strand, within Echvi_3930at 4706.227 kb on + strand, within Echvi_3930at 4706.228 kb on - strand, within Echvi_3930at 4706.228 kb on - strand, within Echvi_3930at 4706.308 kb on + strand, within Echvi_3930at 4706.308 kb on + strand, within Echvi_3930at 4706.311 kb on + strand, within Echvi_3930at 4706.330 kb on - strand, within Echvi_3930at 4706.352 kb on + strand, within Echvi_3930at 4706.352 kb on + strand, within Echvi_3930at 4706.352 kb on + strand, within Echvi_3930at 4706.425 kb on + strand, within Echvi_3930at 4706.425 kb on + strand, within Echvi_3930at 4706.425 kb on + strand, within Echvi_3930at 4706.548 kb on + strandat 4706.577 kb on + strandat 4706.577 kb on + strandat 4706.629 kb on + strandat 4706.632 kb on + strandat 4706.642 kb on + strandat 4706.679 kb on + strandat 4706.679 kb on + strandat 4706.680 kb on - strandat 4706.907 kb on - strandat 4707.056 kb on + strand, within Echvi_3931at 4707.056 kb on + strand, within Echvi_3931at 4707.056 kb on + strand, within Echvi_3931at 4707.056 kb on + strand, within Echvi_3931at 4707.057 kb on - strand, within Echvi_3931at 4707.057 kb on - strand, within Echvi_3931at 4707.064 kb on - strand, within Echvi_3931at 4707.289 kb on - strand, within Echvi_3931at 4707.368 kb on + strand, within Echvi_3931at 4707.369 kb on - strand, within Echvi_3931at 4707.397 kb on + strand, within Echvi_3931at 4707.459 kb on + strand, within Echvi_3931at 4707.506 kb on - strand, within Echvi_3931at 4707.591 kb on + strand, within Echvi_3931at 4707.591 kb on + strand, within Echvi_3931at 4707.592 kb on - strand, within Echvi_3931

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.016 mg/ml
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4,704,292 + Echvi_3928 0.87 +0.6
4,704,340 - -0.5
4,704,340 - +0.9
4,704,379 + -0.0
4,704,380 - -2.2
4,704,384 + -1.0
4,704,454 + +0.6
4,704,455 - +1.1
4,704,455 - -1.0
4,704,473 + -1.8
4,704,474 - -0.8
4,704,477 - -0.6
4,704,494 - -0.4
4,704,494 - -0.2
4,704,554 + Echvi_3929 0.12 +0.2
4,704,557 + Echvi_3929 0.13 -0.4
4,704,558 - Echvi_3929 0.13 -0.5
4,704,568 + Echvi_3929 0.15 +1.6
4,704,568 + Echvi_3929 0.15 +1.6
4,704,569 - Echvi_3929 0.15 -0.4
4,704,615 - Echvi_3929 0.23 -0.7
4,704,615 - Echvi_3929 0.23 -0.1
4,704,666 - Echvi_3929 0.32 -0.5
4,704,667 + Echvi_3929 0.32 +0.8
4,704,667 + Echvi_3929 0.32 +0.4
4,704,667 + Echvi_3929 0.32 -1.2
4,704,667 + Echvi_3929 0.32 -0.2
4,704,667 + Echvi_3929 0.32 -0.6
4,704,667 + Echvi_3929 0.32 +0.5
4,704,667 + Echvi_3929 0.32 +1.6
4,704,668 - Echvi_3929 0.32 +0.7
4,704,668 - Echvi_3929 0.32 +0.2
4,704,668 - Echvi_3929 0.32 +0.8
4,704,668 - Echvi_3929 0.32 +0.8
4,704,668 - Echvi_3929 0.32 -0.9
4,704,893 + Echvi_3929 0.71 +0.1
4,704,897 + Echvi_3929 0.71 -0.3
4,704,901 + Echvi_3929 0.72 -0.3
4,704,901 + Echvi_3929 0.72 +0.1
4,704,974 + Echvi_3929 0.85 +0.3
4,704,975 - Echvi_3929 0.85 +0.6
4,704,976 + Echvi_3929 0.85 +1.2
4,704,976 + Echvi_3929 0.85 +0.4
4,704,985 - Echvi_3929 0.86 +0.3
4,705,035 + +0.3
4,705,036 - -0.0
4,705,083 + +1.8
4,705,084 - -0.7
4,705,087 + +0.7
4,705,088 - -0.3
4,705,088 - +0.8
4,705,090 + -0.6
4,705,090 + -2.2
4,705,091 - -0.2
4,705,113 - -0.5
4,705,135 - -0.9
4,705,156 - +0.9
4,705,359 + Echvi_3930 0.14 -0.5
4,705,359 + Echvi_3930 0.14 +0.3
4,705,359 + Echvi_3930 0.14 +0.4
4,705,359 + Echvi_3930 0.14 +0.0
4,705,359 + Echvi_3930 0.14 +2.2
4,705,359 + Echvi_3930 0.14 +0.8
4,705,359 + Echvi_3930 0.14 -0.5
4,705,359 + Echvi_3930 0.14 -0.1
4,705,359 + Echvi_3930 0.14 -0.4
4,705,360 - Echvi_3930 0.14 -1.2
4,705,360 - Echvi_3930 0.14 -1.2
4,705,360 - Echvi_3930 0.14 +0.9
4,705,360 - Echvi_3930 0.14 +0.3
4,705,360 - Echvi_3930 0.14 +0.3
4,705,360 - Echvi_3930 0.14 +1.2
4,705,360 - Echvi_3930 0.14 -1.3
4,705,360 - Echvi_3930 0.14 -0.4
4,705,360 - Echvi_3930 0.14 -0.4
4,705,438 + Echvi_3930 0.20 +0.4
4,705,438 + Echvi_3930 0.20 -2.4
4,705,438 + Echvi_3930 0.20 +0.7
4,705,438 + Echvi_3930 0.20 -1.0
4,705,438 + Echvi_3930 0.20 -0.2
4,705,439 - Echvi_3930 0.20 +0.9
4,705,439 - Echvi_3930 0.20 -1.3
4,705,505 + Echvi_3930 0.24 +1.6
4,705,525 + Echvi_3930 0.26 +0.5
4,705,525 + Echvi_3930 0.26 +0.5
4,705,525 + Echvi_3930 0.26 -0.2
4,705,525 + Echvi_3930 0.26 +0.1
4,705,525 + Echvi_3930 0.26 -0.7
4,705,526 - Echvi_3930 0.26 +0.0
4,705,526 - Echvi_3930 0.26 +1.6
4,705,526 - Echvi_3930 0.26 +1.5
4,705,526 - Echvi_3930 0.26 -0.1
4,705,529 + Echvi_3930 0.26 +0.1
4,705,529 + Echvi_3930 0.26 +0.2
4,705,529 + Echvi_3930 0.26 -0.1
4,705,530 - Echvi_3930 0.26 -1.6
4,705,530 - Echvi_3930 0.26 -0.2
4,705,685 + Echvi_3930 0.37 +0.4
4,705,685 + Echvi_3930 0.37 +1.2
4,705,686 - Echvi_3930 0.37 +0.6
4,705,689 - Echvi_3930 0.37 -0.2
4,705,689 - Echvi_3930 0.37 +1.2
4,705,689 - Echvi_3930 0.37 +0.6
4,705,689 - Echvi_3930 0.37 +0.8
4,705,689 - Echvi_3930 0.37 +1.8
4,705,691 - Echvi_3930 0.37 -1.4
4,705,691 - Echvi_3930 0.37 -1.2
4,705,717 + Echvi_3930 0.39 -0.2
4,705,718 - Echvi_3930 0.39 +0.3
4,705,793 + Echvi_3930 0.44 +0.1
4,705,793 + Echvi_3930 0.44 +0.1
4,705,795 + Echvi_3930 0.44 -2.3
4,705,796 - Echvi_3930 0.44 +0.5
4,705,796 - Echvi_3930 0.44 +0.5
4,705,876 + Echvi_3930 0.50 +0.0
4,705,961 - Echvi_3930 0.55 +1.3
4,705,993 + Echvi_3930 0.58 -0.3
4,705,993 + Echvi_3930 0.58 +1.6
4,706,041 + Echvi_3930 0.61 -0.5
4,706,042 - Echvi_3930 0.61 -0.4
4,706,059 + Echvi_3930 0.62 +1.2
4,706,059 + Echvi_3930 0.62 -0.0
4,706,060 - Echvi_3930 0.62 -0.6
4,706,060 - Echvi_3930 0.62 +0.2
4,706,060 - Echvi_3930 0.62 -0.5
4,706,060 - Echvi_3930 0.62 -0.4
4,706,060 - Echvi_3930 0.62 +0.3
4,706,060 - Echvi_3930 0.62 -0.8
4,706,062 + Echvi_3930 0.62 -1.5
4,706,062 + Echvi_3930 0.62 -0.5
4,706,062 + Echvi_3930 0.62 -0.4
4,706,062 + Echvi_3930 0.62 +0.2
4,706,062 + Echvi_3930 0.62 +1.0
4,706,062 + Echvi_3930 0.62 +0.2
4,706,062 + Echvi_3930 0.62 +1.8
4,706,063 - Echvi_3930 0.62 +0.8
4,706,063 - Echvi_3930 0.62 -0.1
4,706,102 + Echvi_3930 0.65 -1.0
4,706,227 + Echvi_3930 0.73 +1.6
4,706,228 - Echvi_3930 0.74 +0.1
4,706,228 - Echvi_3930 0.74 +0.2
4,706,308 + Echvi_3930 0.79 -0.2
4,706,308 + Echvi_3930 0.79 +1.2
4,706,311 + Echvi_3930 0.79 +0.4
4,706,330 - Echvi_3930 0.81 +1.2
4,706,352 + Echvi_3930 0.82 -0.5
4,706,352 + Echvi_3930 0.82 +0.6
4,706,352 + Echvi_3930 0.82 +0.5
4,706,425 + Echvi_3930 0.87 -1.3
4,706,425 + Echvi_3930 0.87 +0.5
4,706,425 + Echvi_3930 0.87 -0.6
4,706,548 + +0.5
4,706,577 + -0.1
4,706,577 + -0.2
4,706,629 + -0.1
4,706,632 + -0.3
4,706,642 + -0.5
4,706,679 + +0.3
4,706,679 + +0.2
4,706,680 - +1.2
4,706,907 - -0.2
4,707,056 + Echvi_3931 0.18 -0.1
4,707,056 + Echvi_3931 0.18 +0.2
4,707,056 + Echvi_3931 0.18 -1.3
4,707,056 + Echvi_3931 0.18 -0.0
4,707,057 - Echvi_3931 0.18 +0.8
4,707,057 - Echvi_3931 0.18 -0.4
4,707,064 - Echvi_3931 0.19 +0.3
4,707,289 - Echvi_3931 0.39 +0.1
4,707,368 + Echvi_3931 0.46 -0.2
4,707,369 - Echvi_3931 0.46 +0.3
4,707,397 + Echvi_3931 0.49 -0.4
4,707,459 + Echvi_3931 0.54 -1.2
4,707,506 - Echvi_3931 0.58 +1.3
4,707,591 + Echvi_3931 0.66 +0.7
4,707,591 + Echvi_3931 0.66 +1.6
4,707,592 - Echvi_3931 0.66 +0.2

Or see this region's nucleotide sequence