Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3578

Experiment: m.b. D-Cycloserine 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3576 and Echvi_3577 overlap by 14 nucleotidesEchvi_3577 and Echvi_3578 are separated by 254 nucleotidesEchvi_3578 and Echvi_3579 are separated by 178 nucleotidesEchvi_3579 and Echvi_3580 are separated by 52 nucleotides Echvi_3576: Echvi_3576 - Subtilisin-like serine proteases, at 4,237,383 to 4,239,035 _3576 Echvi_3577: Echvi_3577 - hypothetical protein, at 4,239,022 to 4,239,699 _3577 Echvi_3578: Echvi_3578 - Phosphoribosylanthranilate isomerase, at 4,239,954 to 4,240,580 _3578 Echvi_3579: Echvi_3579 - Electron transfer DM13., at 4,240,759 to 4,241,190 _3579 Echvi_3580: Echvi_3580 - ATPases of the AAA+ class, at 4,241,243 to 4,242,550 _3580 Position (kb) 4239 4240 4241Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4238.956 kb on + strandat 4238.956 kb on + strandat 4238.973 kb on + strandat 4238.996 kb on + strandat 4239.026 kb on + strandat 4239.026 kb on + strandat 4239.026 kb on + strandat 4239.027 kb on - strandat 4239.059 kb on - strandat 4239.072 kb on - strandat 4239.103 kb on - strand, within Echvi_3577at 4239.110 kb on + strand, within Echvi_3577at 4239.111 kb on - strand, within Echvi_3577at 4239.111 kb on - strand, within Echvi_3577at 4239.111 kb on - strand, within Echvi_3577at 4239.111 kb on - strand, within Echvi_3577at 4239.126 kb on + strand, within Echvi_3577at 4239.168 kb on - strand, within Echvi_3577at 4239.181 kb on + strand, within Echvi_3577at 4239.183 kb on + strand, within Echvi_3577at 4239.183 kb on + strand, within Echvi_3577at 4239.184 kb on - strand, within Echvi_3577at 4239.187 kb on - strand, within Echvi_3577at 4239.220 kb on + strand, within Echvi_3577at 4239.221 kb on - strand, within Echvi_3577at 4239.234 kb on - strand, within Echvi_3577at 4239.234 kb on - strand, within Echvi_3577at 4239.237 kb on + strand, within Echvi_3577at 4239.237 kb on + strand, within Echvi_3577at 4239.237 kb on + strand, within Echvi_3577at 4239.238 kb on - strand, within Echvi_3577at 4239.255 kb on - strand, within Echvi_3577at 4239.279 kb on - strand, within Echvi_3577at 4239.300 kb on + strand, within Echvi_3577at 4239.300 kb on + strand, within Echvi_3577at 4239.300 kb on + strand, within Echvi_3577at 4239.300 kb on + strand, within Echvi_3577at 4239.301 kb on - strand, within Echvi_3577at 4239.301 kb on - strand, within Echvi_3577at 4239.301 kb on - strand, within Echvi_3577at 4239.301 kb on - strand, within Echvi_3577at 4239.301 kb on - strand, within Echvi_3577at 4239.301 kb on - strand, within Echvi_3577at 4239.302 kb on + strand, within Echvi_3577at 4239.302 kb on + strand, within Echvi_3577at 4239.303 kb on - strand, within Echvi_3577at 4239.303 kb on - strand, within Echvi_3577at 4239.303 kb on - strand, within Echvi_3577at 4239.304 kb on + strand, within Echvi_3577at 4239.304 kb on + strand, within Echvi_3577at 4239.304 kb on + strand, within Echvi_3577at 4239.304 kb on + strand, within Echvi_3577at 4239.305 kb on - strand, within Echvi_3577at 4239.305 kb on - strand, within Echvi_3577at 4239.305 kb on - strand, within Echvi_3577at 4239.305 kb on - strand, within Echvi_3577at 4239.305 kb on - strand, within Echvi_3577at 4239.305 kb on - strand, within Echvi_3577at 4239.344 kb on - strand, within Echvi_3577at 4239.360 kb on + strand, within Echvi_3577at 4239.379 kb on + strand, within Echvi_3577at 4239.410 kb on + strand, within Echvi_3577at 4239.457 kb on + strand, within Echvi_3577at 4239.458 kb on - strand, within Echvi_3577at 4239.467 kb on + strand, within Echvi_3577at 4239.471 kb on + strand, within Echvi_3577at 4239.492 kb on + strand, within Echvi_3577at 4239.494 kb on + strand, within Echvi_3577at 4239.494 kb on + strand, within Echvi_3577at 4239.495 kb on - strand, within Echvi_3577at 4239.555 kb on - strand, within Echvi_3577at 4239.557 kb on + strand, within Echvi_3577at 4239.557 kb on + strand, within Echvi_3577at 4239.557 kb on + strand, within Echvi_3577at 4239.557 kb on + strand, within Echvi_3577at 4239.558 kb on - strand, within Echvi_3577at 4239.558 kb on - strand, within Echvi_3577at 4239.559 kb on + strand, within Echvi_3577at 4239.560 kb on - strand, within Echvi_3577at 4239.578 kb on + strand, within Echvi_3577at 4239.578 kb on + strand, within Echvi_3577at 4239.578 kb on + strand, within Echvi_3577at 4239.579 kb on - strand, within Echvi_3577at 4239.611 kb on + strand, within Echvi_3577at 4239.611 kb on + strand, within Echvi_3577at 4239.611 kb on + strand, within Echvi_3577at 4239.611 kb on + strand, within Echvi_3577at 4239.612 kb on - strand, within Echvi_3577at 4239.612 kb on - strand, within Echvi_3577at 4239.612 kb on - strand, within Echvi_3577at 4239.612 kb on - strand, within Echvi_3577at 4239.612 kb on - strand, within Echvi_3577at 4239.617 kb on + strand, within Echvi_3577at 4239.640 kb on - strandat 4239.671 kb on - strandat 4239.680 kb on + strandat 4239.743 kb on + strandat 4239.744 kb on - strandat 4239.744 kb on - strandat 4239.776 kb on - strandat 4239.776 kb on - strandat 4239.776 kb on - strandat 4239.808 kb on + strandat 4239.808 kb on + strandat 4239.819 kb on - strandat 4239.852 kb on + strandat 4239.905 kb on - strandat 4239.908 kb on + strandat 4239.935 kb on + strandat 4239.935 kb on + strandat 4240.564 kb on + strandat 4240.609 kb on + strandat 4240.610 kb on - strandat 4240.610 kb on - strandat 4240.660 kb on - strandat 4240.660 kb on - strandat 4240.688 kb on - strandat 4240.741 kb on + strandat 4240.766 kb on - strandat 4240.775 kb on + strandat 4240.775 kb on + strandat 4240.775 kb on + strandat 4240.775 kb on + strandat 4240.776 kb on - strandat 4240.777 kb on + strandat 4240.778 kb on - strandat 4240.778 kb on - strandat 4240.785 kb on - strandat 4240.785 kb on - strandat 4240.787 kb on + strandat 4240.841 kb on + strand, within Echvi_3579at 4240.842 kb on - strand, within Echvi_3579at 4240.886 kb on - strand, within Echvi_3579at 4240.917 kb on + strand, within Echvi_3579at 4240.917 kb on + strand, within Echvi_3579at 4240.917 kb on + strand, within Echvi_3579at 4240.948 kb on - strand, within Echvi_3579at 4240.953 kb on - strand, within Echvi_3579at 4240.965 kb on - strand, within Echvi_3579at 4240.975 kb on - strand, within Echvi_3579at 4241.003 kb on + strand, within Echvi_3579at 4241.003 kb on + strand, within Echvi_3579at 4241.005 kb on + strand, within Echvi_3579at 4241.005 kb on + strand, within Echvi_3579at 4241.005 kb on + strand, within Echvi_3579at 4241.006 kb on - strand, within Echvi_3579at 4241.099 kb on + strand, within Echvi_3579at 4241.099 kb on + strand, within Echvi_3579at 4241.099 kb on + strand, within Echvi_3579at 4241.100 kb on - strand, within Echvi_3579at 4241.100 kb on - strand, within Echvi_3579at 4241.105 kb on + strand, within Echvi_3579at 4241.105 kb on + strand, within Echvi_3579at 4241.105 kb on + strand, within Echvi_3579at 4241.105 kb on + strand, within Echvi_3579at 4241.106 kb on - strand, within Echvi_3579at 4241.106 kb on - strand, within Echvi_3579at 4241.110 kb on - strand, within Echvi_3579at 4241.110 kb on - strand, within Echvi_3579at 4241.110 kb on - strand, within Echvi_3579at 4241.110 kb on - strand, within Echvi_3579at 4241.110 kb on - strand, within Echvi_3579at 4241.113 kb on + strand, within Echvi_3579at 4241.114 kb on - strand, within Echvi_3579at 4241.114 kb on - strand, within Echvi_3579at 4241.183 kb on + strandat 4241.189 kb on - strandat 4241.237 kb on + strandat 4241.282 kb on + strandat 4241.350 kb on - strandat 4241.460 kb on - strand, within Echvi_3580at 4241.462 kb on + strand, within Echvi_3580at 4241.463 kb on - strand, within Echvi_3580at 4241.463 kb on - strand, within Echvi_3580at 4241.463 kb on - strand, within Echvi_3580at 4241.463 kb on - strand, within Echvi_3580at 4241.463 kb on - strand, within Echvi_3580at 4241.464 kb on + strand, within Echvi_3580at 4241.464 kb on + strand, within Echvi_3580at 4241.465 kb on - strand, within Echvi_3580at 4241.465 kb on - strand, within Echvi_3580at 4241.465 kb on - strand, within Echvi_3580at 4241.498 kb on + strand, within Echvi_3580at 4241.498 kb on + strand, within Echvi_3580at 4241.537 kb on - strand, within Echvi_3580at 4241.539 kb on + strand, within Echvi_3580at 4241.539 kb on + strand, within Echvi_3580at 4241.540 kb on - strand, within Echvi_3580at 4241.558 kb on + strand, within Echvi_3580at 4241.559 kb on - strand, within Echvi_3580at 4241.564 kb on + strand, within Echvi_3580at 4241.565 kb on - strand, within Echvi_3580

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.016 mg/ml
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4,238,956 + -1.1
4,238,956 + +0.3
4,238,973 + +0.2
4,238,996 + -0.5
4,239,026 + +0.4
4,239,026 + +0.2
4,239,026 + +0.7
4,239,027 - +0.9
4,239,059 - +1.5
4,239,072 - -0.6
4,239,103 - Echvi_3577 0.12 +0.1
4,239,110 + Echvi_3577 0.13 +0.2
4,239,111 - Echvi_3577 0.13 -0.8
4,239,111 - Echvi_3577 0.13 +0.1
4,239,111 - Echvi_3577 0.13 -0.5
4,239,111 - Echvi_3577 0.13 +0.2
4,239,126 + Echvi_3577 0.15 +1.3
4,239,168 - Echvi_3577 0.22 +1.2
4,239,181 + Echvi_3577 0.23 -0.3
4,239,183 + Echvi_3577 0.24 -0.4
4,239,183 + Echvi_3577 0.24 +0.5
4,239,184 - Echvi_3577 0.24 -1.3
4,239,187 - Echvi_3577 0.24 +0.3
4,239,220 + Echvi_3577 0.29 +0.7
4,239,221 - Echvi_3577 0.29 -0.6
4,239,234 - Echvi_3577 0.31 +0.2
4,239,234 - Echvi_3577 0.31 -0.1
4,239,237 + Echvi_3577 0.32 -1.5
4,239,237 + Echvi_3577 0.32 -0.6
4,239,237 + Echvi_3577 0.32 +0.3
4,239,238 - Echvi_3577 0.32 -1.8
4,239,255 - Echvi_3577 0.34 +0.6
4,239,279 - Echvi_3577 0.38 +1.5
4,239,300 + Echvi_3577 0.41 -0.2
4,239,300 + Echvi_3577 0.41 +0.0
4,239,300 + Echvi_3577 0.41 -0.2
4,239,300 + Echvi_3577 0.41 -1.5
4,239,301 - Echvi_3577 0.41 +1.4
4,239,301 - Echvi_3577 0.41 -0.4
4,239,301 - Echvi_3577 0.41 -0.6
4,239,301 - Echvi_3577 0.41 -0.7
4,239,301 - Echvi_3577 0.41 +1.5
4,239,301 - Echvi_3577 0.41 +3.1
4,239,302 + Echvi_3577 0.41 +0.5
4,239,302 + Echvi_3577 0.41 +0.6
4,239,303 - Echvi_3577 0.41 -0.5
4,239,303 - Echvi_3577 0.41 +0.2
4,239,303 - Echvi_3577 0.41 +1.8
4,239,304 + Echvi_3577 0.42 +0.5
4,239,304 + Echvi_3577 0.42 +2.3
4,239,304 + Echvi_3577 0.42 +0.7
4,239,304 + Echvi_3577 0.42 -0.2
4,239,305 - Echvi_3577 0.42 +2.4
4,239,305 - Echvi_3577 0.42 +0.9
4,239,305 - Echvi_3577 0.42 -1.2
4,239,305 - Echvi_3577 0.42 -0.2
4,239,305 - Echvi_3577 0.42 +0.0
4,239,305 - Echvi_3577 0.42 +0.4
4,239,344 - Echvi_3577 0.47 +0.1
4,239,360 + Echvi_3577 0.50 -0.3
4,239,379 + Echvi_3577 0.53 +0.5
4,239,410 + Echvi_3577 0.57 +1.1
4,239,457 + Echvi_3577 0.64 -1.2
4,239,458 - Echvi_3577 0.64 -0.3
4,239,467 + Echvi_3577 0.66 +0.5
4,239,471 + Echvi_3577 0.66 +3.1
4,239,492 + Echvi_3577 0.69 -0.8
4,239,494 + Echvi_3577 0.70 +0.0
4,239,494 + Echvi_3577 0.70 +2.2
4,239,495 - Echvi_3577 0.70 -1.5
4,239,555 - Echvi_3577 0.79 +2.2
4,239,557 + Echvi_3577 0.79 +0.1
4,239,557 + Echvi_3577 0.79 -0.0
4,239,557 + Echvi_3577 0.79 +0.2
4,239,557 + Echvi_3577 0.79 -1.9
4,239,558 - Echvi_3577 0.79 -1.8
4,239,558 - Echvi_3577 0.79 -0.1
4,239,559 + Echvi_3577 0.79 +0.4
4,239,560 - Echvi_3577 0.79 -0.6
4,239,578 + Echvi_3577 0.82 +0.6
4,239,578 + Echvi_3577 0.82 +1.4
4,239,578 + Echvi_3577 0.82 +2.3
4,239,579 - Echvi_3577 0.82 +0.8
4,239,611 + Echvi_3577 0.87 -0.2
4,239,611 + Echvi_3577 0.87 +2.3
4,239,611 + Echvi_3577 0.87 +0.1
4,239,611 + Echvi_3577 0.87 -0.2
4,239,612 - Echvi_3577 0.87 -0.3
4,239,612 - Echvi_3577 0.87 +0.9
4,239,612 - Echvi_3577 0.87 -1.2
4,239,612 - Echvi_3577 0.87 +0.6
4,239,612 - Echvi_3577 0.87 +1.8
4,239,617 + Echvi_3577 0.88 -2.4
4,239,640 - +0.3
4,239,671 - -0.3
4,239,680 + +0.4
4,239,743 + -0.7
4,239,744 - +1.9
4,239,744 - -0.4
4,239,776 - +0.4
4,239,776 - +1.8
4,239,776 - +0.4
4,239,808 + +1.8
4,239,808 + +0.3
4,239,819 - -0.0
4,239,852 + +1.8
4,239,905 - -1.1
4,239,908 + +0.3
4,239,935 + +0.9
4,239,935 + +0.7
4,240,564 + -0.8
4,240,609 + +0.7
4,240,610 - +0.0
4,240,610 - +1.7
4,240,660 - +0.1
4,240,660 - -0.5
4,240,688 - +0.8
4,240,741 + +0.9
4,240,766 - -0.5
4,240,775 + -1.6
4,240,775 + -1.9
4,240,775 + -0.9
4,240,775 + -0.7
4,240,776 - -1.3
4,240,777 + -1.1
4,240,778 - +0.3
4,240,778 - -0.6
4,240,785 - +0.8
4,240,785 - -0.8
4,240,787 + +0.8
4,240,841 + Echvi_3579 0.19 +0.0
4,240,842 - Echvi_3579 0.19 -0.4
4,240,886 - Echvi_3579 0.29 +0.8
4,240,917 + Echvi_3579 0.37 +0.1
4,240,917 + Echvi_3579 0.37 -0.1
4,240,917 + Echvi_3579 0.37 -0.8
4,240,948 - Echvi_3579 0.44 -0.3
4,240,953 - Echvi_3579 0.45 +0.0
4,240,965 - Echvi_3579 0.48 -0.6
4,240,975 - Echvi_3579 0.50 -0.3
4,241,003 + Echvi_3579 0.56 -1.1
4,241,003 + Echvi_3579 0.56 -0.8
4,241,005 + Echvi_3579 0.57 -0.1
4,241,005 + Echvi_3579 0.57 -0.1
4,241,005 + Echvi_3579 0.57 -0.3
4,241,006 - Echvi_3579 0.57 +0.1
4,241,099 + Echvi_3579 0.79 -0.7
4,241,099 + Echvi_3579 0.79 +0.1
4,241,099 + Echvi_3579 0.79 +0.7
4,241,100 - Echvi_3579 0.79 +0.0
4,241,100 - Echvi_3579 0.79 -2.6
4,241,105 + Echvi_3579 0.80 +1.1
4,241,105 + Echvi_3579 0.80 -0.7
4,241,105 + Echvi_3579 0.80 -0.5
4,241,105 + Echvi_3579 0.80 -0.9
4,241,106 - Echvi_3579 0.80 +0.2
4,241,106 - Echvi_3579 0.80 -1.4
4,241,110 - Echvi_3579 0.81 -0.2
4,241,110 - Echvi_3579 0.81 -0.3
4,241,110 - Echvi_3579 0.81 +0.4
4,241,110 - Echvi_3579 0.81 +0.9
4,241,110 - Echvi_3579 0.81 +0.5
4,241,113 + Echvi_3579 0.82 +0.2
4,241,114 - Echvi_3579 0.82 +0.9
4,241,114 - Echvi_3579 0.82 +0.5
4,241,183 + +1.9
4,241,189 - +1.8
4,241,237 + +0.2
4,241,282 + +1.6
4,241,350 - +0.7
4,241,460 - Echvi_3580 0.17 +0.6
4,241,462 + Echvi_3580 0.17 -1.2
4,241,463 - Echvi_3580 0.17 -0.5
4,241,463 - Echvi_3580 0.17 +1.3
4,241,463 - Echvi_3580 0.17 -0.4
4,241,463 - Echvi_3580 0.17 -0.3
4,241,463 - Echvi_3580 0.17 -0.5
4,241,464 + Echvi_3580 0.17 -0.5
4,241,464 + Echvi_3580 0.17 -0.1
4,241,465 - Echvi_3580 0.17 +0.3
4,241,465 - Echvi_3580 0.17 +1.2
4,241,465 - Echvi_3580 0.17 +0.8
4,241,498 + Echvi_3580 0.19 +0.6
4,241,498 + Echvi_3580 0.19 +0.3
4,241,537 - Echvi_3580 0.22 -0.2
4,241,539 + Echvi_3580 0.23 -0.2
4,241,539 + Echvi_3580 0.23 -0.5
4,241,540 - Echvi_3580 0.23 +0.0
4,241,558 + Echvi_3580 0.24 -1.1
4,241,559 - Echvi_3580 0.24 -0.2
4,241,564 + Echvi_3580 0.25 +0.1
4,241,565 - Echvi_3580 0.25 +0.2

Or see this region's nucleotide sequence