Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0010

Experiment: m.b. D-Cycloserine 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0009 and Echvi_0010 are separated by 117 nucleotidesEchvi_0010 and Echvi_0011 are separated by 19 nucleotides Echvi_0009: Echvi_0009 - Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase, at 6,504 to 7,325 _0009 Echvi_0010: Echvi_0010 - hypothetical protein, at 7,443 to 7,877 _0010 Echvi_0011: Echvi_0011 - ABC-type transport system, involved in lipoprotein release, permease component, at 7,897 to 9,123 _0011 Position (kb) 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 6.482 kb on - strandat 6.488 kb on - strandat 6.488 kb on - strandat 6.488 kb on - strandat 6.496 kb on + strandat 6.497 kb on - strandat 6.514 kb on - strandat 6.533 kb on + strandat 6.533 kb on + strandat 6.635 kb on - strand, within Echvi_0009at 6.641 kb on - strand, within Echvi_0009at 6.648 kb on + strand, within Echvi_0009at 6.649 kb on - strand, within Echvi_0009at 6.716 kb on + strand, within Echvi_0009at 6.728 kb on - strand, within Echvi_0009at 6.737 kb on + strand, within Echvi_0009at 6.737 kb on + strand, within Echvi_0009at 6.737 kb on + strand, within Echvi_0009at 6.850 kb on + strand, within Echvi_0009at 6.851 kb on - strand, within Echvi_0009at 6.870 kb on - strand, within Echvi_0009at 6.873 kb on + strand, within Echvi_0009at 6.874 kb on - strand, within Echvi_0009at 6.887 kb on - strand, within Echvi_0009at 6.906 kb on + strand, within Echvi_0009at 6.930 kb on - strand, within Echvi_0009at 6.942 kb on + strand, within Echvi_0009at 6.943 kb on - strand, within Echvi_0009at 6.958 kb on - strand, within Echvi_0009at 6.961 kb on + strand, within Echvi_0009at 6.961 kb on + strand, within Echvi_0009at 6.962 kb on - strand, within Echvi_0009at 6.962 kb on - strand, within Echvi_0009at 6.962 kb on - strand, within Echvi_0009at 7.003 kb on - strand, within Echvi_0009at 7.155 kb on - strand, within Echvi_0009at 7.191 kb on - strand, within Echvi_0009at 7.211 kb on + strand, within Echvi_0009at 7.212 kb on - strand, within Echvi_0009at 7.226 kb on + strand, within Echvi_0009at 7.261 kb on + strandat 7.262 kb on - strandat 7.262 kb on - strandat 7.282 kb on + strandat 7.352 kb on - strandat 7.354 kb on + strandat 7.354 kb on + strandat 7.355 kb on - strandat 7.355 kb on - strandat 7.355 kb on - strandat 7.355 kb on - strandat 7.356 kb on + strandat 7.356 kb on + strandat 7.357 kb on - strandat 7.357 kb on - strandat 7.357 kb on - strandat 7.357 kb on - strandat 7.357 kb on - strandat 7.357 kb on - strandat 7.357 kb on - strandat 7.407 kb on + strandat 7.408 kb on - strandat 7.429 kb on + strandat 7.430 kb on - strandat 7.430 kb on - strandat 7.433 kb on + strandat 7.433 kb on + strandat 7.434 kb on - strandat 7.474 kb on + strandat 7.474 kb on + strandat 7.474 kb on + strandat 7.475 kb on - strandat 7.475 kb on - strandat 7.479 kb on + strandat 7.544 kb on - strand, within Echvi_0010at 7.632 kb on + strand, within Echvi_0010at 7.632 kb on + strand, within Echvi_0010at 7.633 kb on - strand, within Echvi_0010at 7.640 kb on + strand, within Echvi_0010at 7.652 kb on + strand, within Echvi_0010at 7.676 kb on + strand, within Echvi_0010at 7.676 kb on + strand, within Echvi_0010at 7.676 kb on + strand, within Echvi_0010at 7.676 kb on + strand, within Echvi_0010at 7.676 kb on + strand, within Echvi_0010at 7.677 kb on - strand, within Echvi_0010at 7.677 kb on - strand, within Echvi_0010at 7.677 kb on - strand, within Echvi_0010at 7.679 kb on - strand, within Echvi_0010at 7.679 kb on - strand, within Echvi_0010at 7.679 kb on - strand, within Echvi_0010at 7.737 kb on + strand, within Echvi_0010at 7.738 kb on - strand, within Echvi_0010at 7.741 kb on + strand, within Echvi_0010at 7.742 kb on - strand, within Echvi_0010at 7.742 kb on - strand, within Echvi_0010at 7.775 kb on - strand, within Echvi_0010at 7.805 kb on + strand, within Echvi_0010at 7.820 kb on + strand, within Echvi_0010at 7.823 kb on + strand, within Echvi_0010at 7.824 kb on - strand, within Echvi_0010at 7.851 kb on + strandat 7.851 kb on + strandat 7.851 kb on + strandat 7.852 kb on - strandat 7.857 kb on + strandat 7.858 kb on - strandat 7.858 kb on - strandat 7.858 kb on - strandat 7.862 kb on + strandat 7.883 kb on + strandat 7.884 kb on - strandat 7.884 kb on - strandat 7.886 kb on + strandat 7.887 kb on - strandat 7.898 kb on + strandat 7.898 kb on + strandat 7.898 kb on + strandat 7.921 kb on - strandat 7.929 kb on + strandat 7.976 kb on - strandat 7.983 kb on - strandat 8.095 kb on - strand, within Echvi_0011at 8.111 kb on - strand, within Echvi_0011at 8.135 kb on - strand, within Echvi_0011at 8.135 kb on - strand, within Echvi_0011at 8.143 kb on - strand, within Echvi_0011at 8.153 kb on - strand, within Echvi_0011at 8.153 kb on - strand, within Echvi_0011at 8.153 kb on - strand, within Echvi_0011at 8.212 kb on + strand, within Echvi_0011at 8.213 kb on - strand, within Echvi_0011at 8.222 kb on + strand, within Echvi_0011at 8.266 kb on - strand, within Echvi_0011at 8.370 kb on + strand, within Echvi_0011at 8.408 kb on + strand, within Echvi_0011at 8.408 kb on + strand, within Echvi_0011at 8.408 kb on + strand, within Echvi_0011at 8.544 kb on + strand, within Echvi_0011at 8.545 kb on - strand, within Echvi_0011at 8.545 kb on - strand, within Echvi_0011at 8.545 kb on - strand, within Echvi_0011at 8.600 kb on + strand, within Echvi_0011at 8.768 kb on + strand, within Echvi_0011at 8.774 kb on + strand, within Echvi_0011at 8.774 kb on + strand, within Echvi_0011at 8.774 kb on + strand, within Echvi_0011at 8.774 kb on + strand, within Echvi_0011at 8.775 kb on - strand, within Echvi_0011at 8.793 kb on + strandat 8.793 kb on + strand, within Echvi_0011at 8.804 kb on + strand, within Echvi_0011

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.016 mg/ml
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6,482 - -0.4
6,488 - -0.4
6,488 - +1.0
6,488 - +0.2
6,496 + +0.2
6,497 - -0.9
6,514 - -1.2
6,533 + -1.2
6,533 + +0.3
6,635 - Echvi_0009 0.16 +0.3
6,641 - Echvi_0009 0.17 -1.3
6,648 + Echvi_0009 0.18 -0.7
6,649 - Echvi_0009 0.18 +0.1
6,716 + Echvi_0009 0.26 +0.2
6,728 - Echvi_0009 0.27 -0.6
6,737 + Echvi_0009 0.28 -2.4
6,737 + Echvi_0009 0.28 +1.3
6,737 + Echvi_0009 0.28 -0.9
6,850 + Echvi_0009 0.42 -0.3
6,851 - Echvi_0009 0.42 -0.8
6,870 - Echvi_0009 0.45 -2.6
6,873 + Echvi_0009 0.45 -0.6
6,874 - Echvi_0009 0.45 -0.2
6,887 - Echvi_0009 0.47 +0.2
6,906 + Echvi_0009 0.49 -0.5
6,930 - Echvi_0009 0.52 -0.7
6,942 + Echvi_0009 0.53 -0.5
6,943 - Echvi_0009 0.53 -0.3
6,958 - Echvi_0009 0.55 +0.2
6,961 + Echvi_0009 0.56 -0.1
6,961 + Echvi_0009 0.56 -0.1
6,962 - Echvi_0009 0.56 -1.5
6,962 - Echvi_0009 0.56 -0.0
6,962 - Echvi_0009 0.56 -0.6
7,003 - Echvi_0009 0.61 +1.2
7,155 - Echvi_0009 0.79 -1.1
7,191 - Echvi_0009 0.84 -0.4
7,211 + Echvi_0009 0.86 +0.7
7,212 - Echvi_0009 0.86 -0.9
7,226 + Echvi_0009 0.88 +0.2
7,261 + -0.7
7,262 - +0.9
7,262 - -1.0
7,282 + -0.3
7,352 - +0.1
7,354 + -0.2
7,354 + -0.6
7,355 - +0.0
7,355 - -0.4
7,355 - +0.5
7,355 - -0.8
7,356 + +0.3
7,356 + -0.4
7,357 - -0.9
7,357 - -0.5
7,357 - -0.4
7,357 - +0.4
7,357 - -0.1
7,357 - -0.9
7,357 - +0.9
7,407 + -0.9
7,408 - +0.0
7,429 + -0.8
7,430 - -0.1
7,430 - +0.6
7,433 + +1.3
7,433 + +0.7
7,434 - -0.0
7,474 + -0.4
7,474 + +0.3
7,474 + +0.1
7,475 - +0.8
7,475 - +0.4
7,479 + -0.3
7,544 - Echvi_0010 0.23 -0.3
7,632 + Echvi_0010 0.43 +0.2
7,632 + Echvi_0010 0.43 +1.3
7,633 - Echvi_0010 0.44 -1.2
7,640 + Echvi_0010 0.45 -0.1
7,652 + Echvi_0010 0.48 -1.4
7,676 + Echvi_0010 0.54 +0.1
7,676 + Echvi_0010 0.54 +0.6
7,676 + Echvi_0010 0.54 +0.8
7,676 + Echvi_0010 0.54 +0.7
7,676 + Echvi_0010 0.54 +1.6
7,677 - Echvi_0010 0.54 -1.0
7,677 - Echvi_0010 0.54 +0.3
7,677 - Echvi_0010 0.54 +0.4
7,679 - Echvi_0010 0.54 -0.8
7,679 - Echvi_0010 0.54 +0.4
7,679 - Echvi_0010 0.54 -0.5
7,737 + Echvi_0010 0.68 +0.4
7,738 - Echvi_0010 0.68 -0.2
7,741 + Echvi_0010 0.69 +1.7
7,742 - Echvi_0010 0.69 -0.8
7,742 - Echvi_0010 0.69 +1.3
7,775 - Echvi_0010 0.76 -0.2
7,805 + Echvi_0010 0.83 +0.6
7,820 + Echvi_0010 0.87 +1.2
7,823 + Echvi_0010 0.87 +1.5
7,824 - Echvi_0010 0.88 +0.2
7,851 + +0.2
7,851 + +2.3
7,851 + -0.7
7,852 - -0.3
7,857 + +0.0
7,858 - +0.2
7,858 - +0.4
7,858 - +0.0
7,862 + +0.1
7,883 + +0.1
7,884 - +0.6
7,884 - +0.7
7,886 + +0.1
7,887 - +1.1
7,898 + +0.8
7,898 + +0.6
7,898 + -0.7
7,921 - -1.3
7,929 + -0.1
7,976 - +0.2
7,983 - -0.7
8,095 - Echvi_0011 0.16 +0.2
8,111 - Echvi_0011 0.17 +1.5
8,135 - Echvi_0011 0.19 -1.6
8,135 - Echvi_0011 0.19 +0.8
8,143 - Echvi_0011 0.20 +0.3
8,153 - Echvi_0011 0.21 -0.1
8,153 - Echvi_0011 0.21 +0.4
8,153 - Echvi_0011 0.21 -0.5
8,212 + Echvi_0011 0.26 +0.4
8,213 - Echvi_0011 0.26 -0.1
8,222 + Echvi_0011 0.26 +1.2
8,266 - Echvi_0011 0.30 +0.3
8,370 + Echvi_0011 0.39 +0.0
8,408 + Echvi_0011 0.42 +1.2
8,408 + Echvi_0011 0.42 +0.2
8,408 + Echvi_0011 0.42 -2.6
8,544 + Echvi_0011 0.53 -0.2
8,545 - Echvi_0011 0.53 +0.1
8,545 - Echvi_0011 0.53 +0.1
8,545 - Echvi_0011 0.53 +0.8
8,600 + Echvi_0011 0.57 +0.3
8,768 + Echvi_0011 0.71 -1.1
8,774 + Echvi_0011 0.71 -0.6
8,774 + Echvi_0011 0.71 -0.7
8,774 + Echvi_0011 0.71 -0.6
8,774 + Echvi_0011 0.71 -1.3
8,775 - Echvi_0011 0.72 +1.1
8,793 + +0.2
8,793 + Echvi_0011 0.73 -0.6
8,804 + Echvi_0011 0.74 -0.9

Or see this region's nucleotide sequence