Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3239 and Atu3240 are separated by 194 nucleotides Atu3240 and Atu3241 are separated by 52 nucleotides
Atu3239: Atu3239 - sugar ABC transporter substrate-binding protein, at 255,471 to 256,772
Atu3239
Atu3240: Atu3240 - ROK family transcriptional regulator, at 256,967 to 258,166
Atu3240
Atu3241: Atu3241 - dehydrogenase, at 258,219 to 259,319
Atu3241
Position (kb) 256
257
258
259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 255.977 kb on + strand, within Atu3239 at 256.054 kb on - strand, within Atu3239 at 256.059 kb on - strand, within Atu3239 at 256.070 kb on - strand, within Atu3239 at 256.083 kb on + strand, within Atu3239 at 256.136 kb on - strand, within Atu3239 at 256.170 kb on - strand, within Atu3239 at 256.215 kb on - strand, within Atu3239 at 256.245 kb on + strand, within Atu3239 at 256.263 kb on - strand, within Atu3239 at 256.328 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.341 kb on - strand, within Atu3239 at 256.341 kb on - strand, within Atu3239 at 256.341 kb on - strand, within Atu3239 at 256.341 kb on - strand, within Atu3239 at 256.341 kb on - strand, within Atu3239 at 256.378 kb on + strand, within Atu3239 at 256.384 kb on + strand, within Atu3239 at 256.452 kb on - strand, within Atu3239 at 256.465 kb on - strand, within Atu3239 at 256.568 kb on - strand, within Atu3239 at 256.646 kb on + strand at 256.700 kb on - strand at 256.700 kb on - strand at 256.708 kb on - strand at 256.985 kb on + strand at 257.007 kb on + strand at 257.020 kb on + strand at 257.127 kb on + strand, within Atu3240 at 257.127 kb on + strand, within Atu3240 at 257.127 kb on + strand, within Atu3240 at 257.135 kb on - strand, within Atu3240 at 257.285 kb on + strand, within Atu3240 at 257.298 kb on - strand, within Atu3240 at 257.308 kb on + strand, within Atu3240 at 257.321 kb on - strand, within Atu3240 at 257.361 kb on + strand, within Atu3240 at 257.426 kb on - strand, within Atu3240 at 257.469 kb on + strand, within Atu3240 at 257.477 kb on - strand, within Atu3240 at 257.634 kb on + strand, within Atu3240 at 257.676 kb on + strand, within Atu3240 at 257.865 kb on + strand, within Atu3240 at 257.871 kb on + strand, within Atu3240 at 257.909 kb on + strand, within Atu3240 at 257.910 kb on + strand, within Atu3240 at 257.956 kb on + strand, within Atu3240 at 258.013 kb on + strand, within Atu3240 at 258.185 kb on + strand at 258.193 kb on - strand at 258.193 kb on - strand at 258.343 kb on - strand, within Atu3241 at 258.366 kb on - strand, within Atu3241 at 258.455 kb on - strand, within Atu3241 at 258.561 kb on - strand, within Atu3241 at 258.602 kb on + strand, within Atu3241 at 258.670 kb on - strand, within Atu3241 at 258.800 kb on - strand, within Atu3241 at 258.801 kb on + strand, within Atu3241 at 258.903 kb on + strand, within Atu3241 at 258.911 kb on - strand, within Atu3241 at 258.917 kb on - strand, within Atu3241 at 258.944 kb on - strand, within Atu3241 at 258.944 kb on - strand, within Atu3241 at 259.007 kb on + strand, within Atu3241 at 259.085 kb on + strand, within Atu3241 at 259.085 kb on + strand, within Atu3241 at 259.093 kb on - strand, within Atu3241 at 259.093 kb on - strand, within Atu3241
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 255,977 + Atu3239 0.39 -0.1 256,054 - Atu3239 0.45 -0.1 256,059 - Atu3239 0.45 -0.2 256,070 - Atu3239 0.46 -0.6 256,083 + Atu3239 0.47 +0.1 256,136 - Atu3239 0.51 -0.2 256,170 - Atu3239 0.54 -0.4 256,215 - Atu3239 0.57 -0.4 256,245 + Atu3239 0.59 +0.1 256,263 - Atu3239 0.61 -1.5 256,328 + Atu3239 0.66 -0.0 256,333 + Atu3239 0.66 -0.6 256,333 + Atu3239 0.66 -0.3 256,333 + Atu3239 0.66 +2.0 256,333 + Atu3239 0.66 -0.4 256,333 + Atu3239 0.66 -0.6 256,333 + Atu3239 0.66 +0.2 256,333 + Atu3239 0.66 +0.0 256,341 - Atu3239 0.67 +0.1 256,341 - Atu3239 0.67 +0.6 256,341 - Atu3239 0.67 -0.3 256,341 - Atu3239 0.67 +1.0 256,341 - Atu3239 0.67 -0.0 256,378 + Atu3239 0.70 +0.2 256,384 + Atu3239 0.70 -1.7 256,452 - Atu3239 0.75 +0.3 256,465 - Atu3239 0.76 -0.1 256,568 - Atu3239 0.84 -0.4 256,646 + -0.1 256,700 - -0.5 256,700 - +0.4 256,708 - -0.5 256,985 + -0.9 257,007 + -0.3 257,020 + +0.0 257,127 + Atu3240 0.13 -1.3 257,127 + Atu3240 0.13 -1.2 257,127 + Atu3240 0.13 +1.1 257,135 - Atu3240 0.14 -0.2 257,285 + Atu3240 0.27 -1.0 257,298 - Atu3240 0.28 -0.5 257,308 + Atu3240 0.28 +0.4 257,321 - Atu3240 0.29 -0.3 257,361 + Atu3240 0.33 -1.1 257,426 - Atu3240 0.38 -0.7 257,469 + Atu3240 0.42 -0.7 257,477 - Atu3240 0.42 -1.0 257,634 + Atu3240 0.56 -0.8 257,676 + Atu3240 0.59 -0.9 257,865 + Atu3240 0.75 -0.5 257,871 + Atu3240 0.75 -1.1 257,909 + Atu3240 0.79 -0.9 257,910 + Atu3240 0.79 -1.3 257,956 + Atu3240 0.82 -0.1 258,013 + Atu3240 0.87 +0.8 258,185 + +0.4 258,193 - -0.6 258,193 - -0.2 258,343 - Atu3241 0.11 -0.8 258,366 - Atu3241 0.13 -0.0 258,455 - Atu3241 0.21 -2.2 258,561 - Atu3241 0.31 -0.2 258,602 + Atu3241 0.35 -0.3 258,670 - Atu3241 0.41 -0.1 258,800 - Atu3241 0.53 -0.4 258,801 + Atu3241 0.53 +1.5 258,903 + Atu3241 0.62 -0.3 258,911 - Atu3241 0.63 -0.7 258,917 - Atu3241 0.63 +0.2 258,944 - Atu3241 0.66 +0.0 258,944 - Atu3241 0.66 +0.5 259,007 + Atu3241 0.72 -0.6 259,085 + Atu3241 0.79 +0.4 259,085 + Atu3241 0.79 +0.9 259,093 - Atu3241 0.79 +0.4 259,093 - Atu3241 0.79 -0.3
Or see this region's nucleotide sequence