Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0894 and Atu0895 are separated by 241 nucleotides Atu0895 and Atu0896 are separated by 30 nucleotides Atu0896 and Atu0897 are separated by 244 nucleotides
Atu0894: Atu0894 - ABC transporter, membrane spanning protein, at 884,715 to 885,623
Atu0894
Atu0895: Atu0895 - ABC transporter, substrate binding protein, at 885,865 to 886,875
Atu0895
Atu0896: Atu0896 - hypothetical protein, at 886,906 to 887,127
Atu0896
Atu0897: Atu0897 - protease II, at 887,372 to 889,471
Atu0897
Position (kb) 885
886
887 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 884.893 kb on - strand, within Atu0894 at 884.952 kb on + strand, within Atu0894 at 885.098 kb on - strand, within Atu0894 at 885.122 kb on - strand, within Atu0894 at 885.171 kb on + strand, within Atu0894 at 885.502 kb on + strand, within Atu0894 at 885.568 kb on - strand at 885.607 kb on + strand at 885.669 kb on - strand at 885.683 kb on - strand at 885.684 kb on + strand at 885.775 kb on + strand at 885.806 kb on - strand at 885.829 kb on - strand at 885.996 kb on - strand, within Atu0895 at 886.002 kb on - strand, within Atu0895 at 886.191 kb on + strand, within Atu0895 at 886.345 kb on - strand, within Atu0895 at 886.346 kb on + strand, within Atu0895 at 886.559 kb on + strand, within Atu0895 at 886.729 kb on + strand, within Atu0895 at 886.737 kb on - strand, within Atu0895 at 886.839 kb on - strand at 886.919 kb on + strand at 887.109 kb on + strand at 887.369 kb on + strand at 887.416 kb on - strand at 887.491 kb on + strand at 887.656 kb on - strand, within Atu0897 at 887.705 kb on + strand, within Atu0897 at 887.875 kb on - strand, within Atu0897
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 884,893 - Atu0894 0.20 -0.6 884,952 + Atu0894 0.26 -0.5 885,098 - Atu0894 0.42 -0.0 885,122 - Atu0894 0.45 -3.0 885,171 + Atu0894 0.50 -0.0 885,502 + Atu0894 0.87 +0.9 885,568 - -0.4 885,607 + +0.7 885,669 - +0.0 885,683 - -0.1 885,684 + -0.5 885,775 + -0.1 885,806 - -0.4 885,829 - +0.1 885,996 - Atu0895 0.13 -0.9 886,002 - Atu0895 0.14 -0.0 886,191 + Atu0895 0.32 +0.6 886,345 - Atu0895 0.47 -1.0 886,346 + Atu0895 0.48 -0.8 886,559 + Atu0895 0.69 -0.8 886,729 + Atu0895 0.85 +0.5 886,737 - Atu0895 0.86 -1.3 886,839 - -0.5 886,919 + +0.3 887,109 + +0.5 887,369 + -1.2 887,416 - +0.7 887,491 + +0.1 887,656 - Atu0897 0.14 +0.3 887,705 + Atu0897 0.16 -0.7 887,875 - Atu0897 0.24 -0.1
Or see this region's nucleotide sequence