Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0643 and Atu0644 are separated by 100 nucleotides Atu0644 and Atu0645 are separated by 232 nucleotides Atu0645 and Atu0646 are separated by 53 nucleotides
Atu0643: Atu0643 - hypothetical protein, at 629,700 to 631,637
Atu0643
Atu0644: Atu0644 - glycyl-tRNA synthetase, beta chain, at 631,738 to 633,891
Atu0644
Atu0645: Atu0645 - hypothetical protein, at 634,124 to 634,618
Atu0645
Atu0646: Atu0646 - methyl-accepting chemotaxis protein A, at 634,672 to 636,495
Atu0646
Position (kb) 631
632
633
634 Strain fitness (log2 ratio) -1
0
1 at 630.814 kb on - strand, within Atu0643 at 630.882 kb on + strand, within Atu0643 at 630.957 kb on + strand, within Atu0643 at 631.006 kb on + strand, within Atu0643 at 631.059 kb on + strand, within Atu0643 at 631.264 kb on - strand, within Atu0643 at 631.354 kb on - strand, within Atu0643 at 631.359 kb on - strand, within Atu0643 at 631.359 kb on - strand, within Atu0643 at 631.362 kb on - strand, within Atu0643 at 631.400 kb on - strand, within Atu0643 at 631.509 kb on + strand at 631.527 kb on - strand at 633.938 kb on + strand at 633.938 kb on + strand at 633.938 kb on + strand at 633.946 kb on - strand at 633.946 kb on - strand at 633.946 kb on - strand at 633.959 kb on - strand at 634.002 kb on + strand at 634.075 kb on + strand at 634.075 kb on + strand at 634.215 kb on + strand, within Atu0645 at 634.240 kb on + strand, within Atu0645 at 634.665 kb on + strand at 634.683 kb on - strand at 634.700 kb on + strand at 634.700 kb on + strand at 634.710 kb on + strand at 634.763 kb on + strand at 634.824 kb on - strand at 634.827 kb on - strand at 634.871 kb on + strand, within Atu0646 at 634.871 kb on + strand, within Atu0646 at 634.879 kb on - strand, within Atu0646
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 630,814 - Atu0643 0.57 -0.8 630,882 + Atu0643 0.61 +0.3 630,957 + Atu0643 0.65 +0.8 631,006 + Atu0643 0.67 +0.4 631,059 + Atu0643 0.70 -0.1 631,264 - Atu0643 0.81 +0.8 631,354 - Atu0643 0.85 -0.5 631,359 - Atu0643 0.86 -0.5 631,359 - Atu0643 0.86 -0.3 631,362 - Atu0643 0.86 +1.0 631,400 - Atu0643 0.88 -0.6 631,509 + -0.4 631,527 - +0.3 633,938 + +1.2 633,938 + +0.4 633,938 + -0.8 633,946 - -0.5 633,946 - -0.0 633,946 - -0.5 633,959 - -0.2 634,002 + +0.0 634,075 + +0.6 634,075 + +0.3 634,215 + Atu0645 0.18 -0.5 634,240 + Atu0645 0.23 -0.7 634,665 + +0.2 634,683 - -0.3 634,700 + -0.9 634,700 + -0.0 634,710 + -0.0 634,763 + -0.3 634,824 - +0.7 634,827 - -0.4 634,871 + Atu0646 0.11 +1.0 634,871 + Atu0646 0.11 -0.6 634,879 - Atu0646 0.11 +0.0
Or see this region's nucleotide sequence